Strain Fitness in Serratia liquefaciens MT49 around IAI46_00935

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00925 and IAI46_00930 are separated by 5 nucleotidesIAI46_00930 and IAI46_00935 overlap by 11 nucleotidesIAI46_00935 and IAI46_00940 are separated by 315 nucleotides IAI46_00925: IAI46_00925 - signal recognition particle-docking protein FtsY, at 206,374 to 208,059 _00925 IAI46_00930: IAI46_00930 - cell division ATP-binding protein FtsE, at 208,065 to 208,736 _00930 IAI46_00935: IAI46_00935 - cell division protein FtsX, at 208,726 to 209,679 _00935 IAI46_00940: IAI46_00940 - RNA polymerase sigma factor RpoH, at 209,995 to 210,852 _00940 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1at 208.057 kb on + strandat 208.060 kb on + strandat 208.060 kb on + strandat 208.061 kb on - strandat 208.088 kb on + strandat 208.089 kb on - strandat 208.095 kb on + strandat 208.190 kb on + strand, within IAI46_00930at 208.191 kb on - strand, within IAI46_00930at 208.238 kb on + strand, within IAI46_00930at 208.238 kb on + strand, within IAI46_00930at 208.238 kb on + strand, within IAI46_00930at 208.353 kb on + strand, within IAI46_00930at 208.353 kb on + strand, within IAI46_00930at 208.353 kb on + strand, within IAI46_00930at 208.379 kb on + strand, within IAI46_00930at 208.380 kb on - strand, within IAI46_00930at 208.380 kb on - strand, within IAI46_00930at 208.451 kb on + strand, within IAI46_00930at 208.538 kb on - strand, within IAI46_00930at 208.614 kb on - strand, within IAI46_00930at 208.678 kb on - strandat 208.678 kb on - strandat 208.734 kb on + strandat 208.735 kb on - strandat 208.735 kb on - strandat 208.755 kb on + strandat 208.755 kb on + strandat 208.755 kb on + strandat 208.818 kb on + strandat 208.818 kb on + strandat 208.819 kb on - strandat 208.894 kb on + strand, within IAI46_00935at 208.894 kb on + strand, within IAI46_00935at 208.894 kb on + strand, within IAI46_00935at 208.894 kb on + strand, within IAI46_00935at 208.894 kb on + strand, within IAI46_00935at 208.895 kb on - strand, within IAI46_00935at 208.895 kb on - strand, within IAI46_00935at 208.895 kb on - strand, within IAI46_00935at 208.896 kb on + strand, within IAI46_00935at 208.896 kb on + strand, within IAI46_00935at 208.936 kb on + strand, within IAI46_00935at 208.936 kb on + strand, within IAI46_00935at 208.942 kb on - strand, within IAI46_00935at 208.953 kb on - strand, within IAI46_00935at 208.960 kb on + strand, within IAI46_00935at 208.960 kb on + strand, within IAI46_00935at 208.960 kb on + strand, within IAI46_00935at 208.961 kb on - strand, within IAI46_00935at 208.968 kb on + strand, within IAI46_00935at 208.969 kb on - strand, within IAI46_00935at 209.044 kb on + strand, within IAI46_00935at 209.109 kb on + strand, within IAI46_00935at 209.110 kb on - strand, within IAI46_00935at 209.143 kb on - strand, within IAI46_00935at 209.187 kb on + strand, within IAI46_00935at 209.187 kb on + strand, within IAI46_00935at 209.188 kb on - strand, within IAI46_00935at 209.188 kb on - strand, within IAI46_00935at 209.351 kb on + strand, within IAI46_00935at 209.352 kb on - strand, within IAI46_00935at 209.352 kb on - strand, within IAI46_00935at 209.352 kb on - strand, within IAI46_00935at 209.379 kb on + strand, within IAI46_00935at 209.559 kb on + strand, within IAI46_00935at 209.560 kb on - strand, within IAI46_00935at 209.678 kb on - strandat 209.691 kb on + strandat 209.691 kb on + strandat 209.692 kb on - strandat 209.736 kb on - strandat 209.736 kb on - strandat 209.744 kb on + strandat 209.744 kb on + strandat 209.745 kb on - strandat 209.749 kb on + strandat 209.749 kb on + strandat 209.749 kb on + strandat 209.749 kb on + strandat 209.750 kb on - strandat 209.750 kb on - strandat 209.771 kb on + strandat 209.810 kb on + strandat 209.810 kb on + strandat 209.810 kb on + strandat 209.811 kb on - strandat 209.811 kb on - strandat 209.811 kb on - strandat 209.846 kb on + strandat 209.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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208,057 + +0.3
208,060 + +0.0
208,060 + -0.7
208,061 - +0.2
208,088 + -0.8
208,089 - +0.6
208,095 + -0.6
208,190 + IAI46_00930 0.19 -2.3
208,191 - IAI46_00930 0.19 -0.3
208,238 + IAI46_00930 0.26 -0.1
208,238 + IAI46_00930 0.26 -0.7
208,238 + IAI46_00930 0.26 +0.6
208,353 + IAI46_00930 0.43 -0.2
208,353 + IAI46_00930 0.43 -0.4
208,353 + IAI46_00930 0.43 -0.2
208,379 + IAI46_00930 0.47 +0.1
208,380 - IAI46_00930 0.47 -0.1
208,380 - IAI46_00930 0.47 -0.5
208,451 + IAI46_00930 0.57 -0.6
208,538 - IAI46_00930 0.70 +0.4
208,614 - IAI46_00930 0.82 +0.2
208,678 - -0.1
208,678 - +0.3
208,734 + -0.4
208,735 - +0.0
208,735 - -0.1
208,755 + +0.7
208,755 + -0.1
208,755 + -0.7
208,818 + -1.0
208,818 + +0.8
208,819 - -0.9
208,894 + IAI46_00935 0.18 -0.1
208,894 + IAI46_00935 0.18 -0.6
208,894 + IAI46_00935 0.18 +0.1
208,894 + IAI46_00935 0.18 +0.3
208,894 + IAI46_00935 0.18 +0.1
208,895 - IAI46_00935 0.18 +0.3
208,895 - IAI46_00935 0.18 +0.5
208,895 - IAI46_00935 0.18 +0.9
208,896 + IAI46_00935 0.18 +0.1
208,896 + IAI46_00935 0.18 -0.5
208,936 + IAI46_00935 0.22 +0.6
208,936 + IAI46_00935 0.22 -0.2
208,942 - IAI46_00935 0.23 -0.1
208,953 - IAI46_00935 0.24 -0.7
208,960 + IAI46_00935 0.25 +0.3
208,960 + IAI46_00935 0.25 +0.2
208,960 + IAI46_00935 0.25 +0.7
208,961 - IAI46_00935 0.25 +0.6
208,968 + IAI46_00935 0.25 -0.4
208,969 - IAI46_00935 0.25 -0.2
209,044 + IAI46_00935 0.33 +0.8
209,109 + IAI46_00935 0.40 -0.8
209,110 - IAI46_00935 0.40 +0.3
209,143 - IAI46_00935 0.44 -0.3
209,187 + IAI46_00935 0.48 -0.4
209,187 + IAI46_00935 0.48 -0.7
209,188 - IAI46_00935 0.48 -0.7
209,188 - IAI46_00935 0.48 -0.6
209,351 + IAI46_00935 0.66 +0.2
209,352 - IAI46_00935 0.66 +0.1
209,352 - IAI46_00935 0.66 +0.0
209,352 - IAI46_00935 0.66 +0.0
209,379 + IAI46_00935 0.68 -0.2
209,559 + IAI46_00935 0.87 +0.4
209,560 - IAI46_00935 0.87 +1.6
209,678 - +0.5
209,691 + +1.1
209,691 + +0.3
209,692 - -0.1
209,736 - +0.6
209,736 - +0.2
209,744 + +0.2
209,744 + -0.4
209,745 - -0.3
209,749 + +1.0
209,749 + +0.5
209,749 + -0.3
209,749 + -0.4
209,750 - +0.1
209,750 - +1.4
209,771 + +0.3
209,810 + +0.3
209,810 + +1.3
209,810 + +0.3
209,811 - +0.1
209,811 - +0.9
209,811 - -2.1
209,846 + +0.8
209,917 + +0.7

Or see this region's nucleotide sequence