Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4581 and Echvi_4582 are separated by 664 nucleotides Echvi_4582 and Echvi_4583 are separated by 886 nucleotides
Echvi_4581: Echvi_4581 - hypothetical protein, at 5,487,061 to 5,487,384
_4581
Echvi_4582: Echvi_4582 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 5,488,049 to 5,488,462
_4582
Echvi_4583: Echvi_4583 - Aspartate/tyrosine/aromatic aminotransferase, at 5,489,349 to 5,490,677
_4583
Position (kb)
5488
5489 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5487.074 kb on + strand at 5487.074 kb on + strand at 5487.074 kb on + strand at 5487.074 kb on + strand at 5487.075 kb on - strand at 5487.075 kb on - strand at 5487.078 kb on + strand at 5487.078 kb on + strand at 5487.078 kb on + strand at 5487.079 kb on - strand at 5487.079 kb on - strand at 5487.139 kb on + strand, within Echvi_4581 at 5487.170 kb on + strand, within Echvi_4581 at 5487.170 kb on + strand, within Echvi_4581 at 5487.171 kb on - strand, within Echvi_4581 at 5487.175 kb on - strand, within Echvi_4581 at 5487.197 kb on + strand, within Echvi_4581 at 5487.197 kb on + strand, within Echvi_4581 at 5487.198 kb on - strand, within Echvi_4581 at 5487.267 kb on + strand, within Echvi_4581 at 5487.310 kb on + strand, within Echvi_4581 at 5487.311 kb on - strand, within Echvi_4581 at 5487.351 kb on + strand, within Echvi_4581 at 5487.351 kb on + strand, within Echvi_4581 at 5487.352 kb on - strand at 5487.353 kb on + strand at 5487.353 kb on + strand at 5487.353 kb on + strand at 5487.353 kb on + strand at 5487.353 kb on + strand at 5487.353 kb on + strand at 5487.353 kb on + strand at 5487.353 kb on + strand at 5487.353 kb on + strand at 5487.353 kb on + strand at 5487.354 kb on - strand at 5487.354 kb on - strand at 5487.354 kb on - strand at 5487.354 kb on - strand at 5487.373 kb on + strand at 5487.384 kb on + strand at 5487.409 kb on - strand at 5487.434 kb on - strand at 5487.481 kb on + strand at 5487.565 kb on - strand at 5487.597 kb on + strand at 5487.610 kb on - strand at 5487.677 kb on - strand at 5487.731 kb on + strand at 5487.732 kb on - strand at 5487.772 kb on + strand at 5487.800 kb on - strand at 5487.804 kb on + strand at 5487.804 kb on + strand at 5487.823 kb on - strand at 5487.870 kb on + strand at 5487.870 kb on + strand at 5487.871 kb on - strand at 5487.885 kb on + strand at 5487.886 kb on - strand at 5487.903 kb on + strand at 5487.906 kb on + strand at 5487.906 kb on + strand at 5487.975 kb on + strand at 5487.975 kb on + strand at 5487.975 kb on + strand at 5488.019 kb on - strand at 5488.019 kb on - strand at 5488.019 kb on - strand at 5488.021 kb on - strand at 5488.251 kb on - strand, within Echvi_4582 at 5488.308 kb on - strand, within Echvi_4582 at 5488.308 kb on - strand, within Echvi_4582 at 5488.330 kb on + strand, within Echvi_4582 at 5488.392 kb on + strand, within Echvi_4582 at 5488.394 kb on - strand, within Echvi_4582 at 5488.465 kb on + strand at 5488.466 kb on - strand at 5488.466 kb on - strand at 5488.467 kb on + strand at 5488.530 kb on + strand at 5488.535 kb on + strand at 5488.536 kb on - strand at 5488.612 kb on + strand at 5488.678 kb on + strand at 5488.689 kb on + strand at 5488.689 kb on + strand at 5488.690 kb on - strand at 5488.690 kb on - strand at 5488.751 kb on + strand at 5488.751 kb on + strand at 5488.751 kb on + strand at 5488.776 kb on - strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.798 kb on - strand at 5488.798 kb on - strand at 5488.798 kb on - strand at 5488.798 kb on - strand at 5488.798 kb on - strand at 5488.800 kb on - strand at 5488.800 kb on - strand at 5488.801 kb on + strand at 5488.802 kb on - strand at 5488.927 kb on + strand at 5488.928 kb on - strand at 5488.950 kb on - strand at 5488.985 kb on - strand at 5489.040 kb on - strand at 5489.253 kb on - strand at 5489.321 kb on + strand at 5489.321 kb on + strand at 5489.322 kb on - strand at 5489.327 kb on + strand at 5489.328 kb on - strand at 5489.422 kb on + strand at 5489.424 kb on + strand at 5489.424 kb on + strand at 5489.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 5,487,074 + -0.7 5,487,074 + +1.7 5,487,074 + +0.2 5,487,074 + +1.0 5,487,075 - -0.5 5,487,075 - -0.1 5,487,078 + -0.7 5,487,078 + +0.2 5,487,078 + -0.3 5,487,079 - +0.2 5,487,079 - -1.3 5,487,139 + Echvi_4581 0.24 +0.5 5,487,170 + Echvi_4581 0.34 -0.8 5,487,170 + Echvi_4581 0.34 -0.2 5,487,171 - Echvi_4581 0.34 +0.1 5,487,175 - Echvi_4581 0.35 +0.6 5,487,197 + Echvi_4581 0.42 -0.4 5,487,197 + Echvi_4581 0.42 -0.1 5,487,198 - Echvi_4581 0.42 +0.2 5,487,267 + Echvi_4581 0.64 -0.1 5,487,310 + Echvi_4581 0.77 -1.4 5,487,311 - Echvi_4581 0.77 +0.0 5,487,351 + Echvi_4581 0.90 -0.5 5,487,351 + Echvi_4581 0.90 -0.8 5,487,352 - -1.4 5,487,353 + -0.6 5,487,353 + +0.8 5,487,353 + -0.2 5,487,353 + +0.6 5,487,353 + +0.7 5,487,353 + +0.6 5,487,353 + +0.7 5,487,353 + -0.9 5,487,353 + -0.1 5,487,353 + -0.0 5,487,354 - -1.0 5,487,354 - -0.2 5,487,354 - +1.4 5,487,354 - -1.6 5,487,373 + -1.0 5,487,384 + -0.2 5,487,409 - -0.6 5,487,434 - +1.5 5,487,481 + -0.2 5,487,565 - -0.2 5,487,597 + +0.2 5,487,610 - +0.8 5,487,677 - +0.2 5,487,731 + +0.1 5,487,732 - -0.8 5,487,772 + -0.1 5,487,800 - +0.2 5,487,804 + -0.1 5,487,804 + +0.1 5,487,823 - -0.0 5,487,870 + -1.1 5,487,870 + -1.0 5,487,871 - -0.1 5,487,885 + +0.9 5,487,886 - +0.2 5,487,903 + +0.1 5,487,906 + -0.4 5,487,906 + -0.3 5,487,975 + +0.5 5,487,975 + +0.1 5,487,975 + -1.2 5,488,019 - -0.7 5,488,019 - -0.1 5,488,019 - +0.5 5,488,021 - +0.0 5,488,251 - Echvi_4582 0.49 -0.2 5,488,308 - Echvi_4582 0.63 -0.4 5,488,308 - Echvi_4582 0.63 -0.4 5,488,330 + Echvi_4582 0.68 -0.5 5,488,392 + Echvi_4582 0.83 +1.2 5,488,394 - Echvi_4582 0.83 +1.3 5,488,465 + -1.7 5,488,466 - -1.6 5,488,466 - +0.6 5,488,467 + -1.0 5,488,530 + +0.5 5,488,535 + +0.1 5,488,536 - +0.4 5,488,612 + -1.8 5,488,678 + +0.3 5,488,689 + +1.0 5,488,689 + +0.3 5,488,690 - +1.9 5,488,690 - -0.4 5,488,751 + -0.7 5,488,751 + -0.2 5,488,751 + +0.1 5,488,776 - -0.7 5,488,797 + -0.3 5,488,797 + -1.3 5,488,797 + +1.0 5,488,797 + +0.3 5,488,797 + +0.1 5,488,797 + +0.6 5,488,798 - -0.5 5,488,798 - -0.4 5,488,798 - +0.1 5,488,798 - -1.0 5,488,798 - -0.4 5,488,800 - -0.4 5,488,800 - -0.0 5,488,801 + +0.3 5,488,802 - +0.3 5,488,927 + -2.2 5,488,928 - +0.3 5,488,950 - -0.1 5,488,985 - +0.6 5,489,040 - -1.5 5,489,253 - -1.3 5,489,321 + +0.4 5,489,321 + +0.7 5,489,322 - +0.4 5,489,327 + -0.8 5,489,328 - -0.8 5,489,422 + -0.3 5,489,424 + +0.6 5,489,424 + +0.6 5,489,425 - -0.1
Or see this region's nucleotide sequence