Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4184

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4183 and Echvi_4184 are separated by 995 nucleotidesEchvi_4184 and Echvi_4185 overlap by 4 nucleotides Echvi_4183: Echvi_4183 - phage/plasmid-related protein TIGR03299, at 4,999,917 to 5,000,987 _4183 Echvi_4184: Echvi_4184 - Predicted transcriptional regulators, at 5,001,983 to 5,002,300 _4184 Echvi_4185: Echvi_4185 - HipA-like C-terminal domain./HipA-like N-terminal domain., at 5,002,297 to 5,003,568 _4185 Position (kb) 5001 5002 5003Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5001.011 kb on + strandat 5001.011 kb on + strandat 5001.168 kb on + strandat 5001.169 kb on - strandat 5001.224 kb on + strandat 5001.224 kb on + strandat 5001.225 kb on - strandat 5001.225 kb on - strandat 5001.225 kb on - strandat 5001.225 kb on - strandat 5001.225 kb on - strandat 5001.264 kb on - strandat 5001.474 kb on + strandat 5001.475 kb on - strandat 5001.479 kb on - strandat 5001.482 kb on - strandat 5001.482 kb on - strandat 5001.503 kb on + strandat 5001.518 kb on + strandat 5001.519 kb on - strandat 5001.519 kb on - strandat 5001.524 kb on - strandat 5001.528 kb on - strandat 5001.528 kb on - strandat 5001.540 kb on + strandat 5001.541 kb on - strandat 5001.541 kb on - strandat 5001.541 kb on - strandat 5001.615 kb on + strandat 5001.666 kb on + strandat 5001.666 kb on + strandat 5001.701 kb on + strandat 5001.796 kb on + strandat 5001.797 kb on - strandat 5001.829 kb on + strandat 5001.829 kb on + strandat 5001.852 kb on - strandat 5001.888 kb on - strandat 5001.888 kb on - strandat 5001.896 kb on - strandat 5001.896 kb on - strandat 5001.896 kb on - strandat 5001.896 kb on - strandat 5001.898 kb on - strandat 5001.929 kb on - strandat 5002.066 kb on - strand, within Echvi_4184at 5002.078 kb on + strand, within Echvi_4184at 5002.078 kb on + strand, within Echvi_4184at 5002.125 kb on + strand, within Echvi_4184at 5002.126 kb on - strand, within Echvi_4184at 5002.171 kb on - strand, within Echvi_4184at 5002.210 kb on - strand, within Echvi_4184at 5002.210 kb on - strand, within Echvi_4184at 5002.210 kb on - strand, within Echvi_4184at 5002.234 kb on - strand, within Echvi_4184at 5002.234 kb on - strand, within Echvi_4184at 5002.234 kb on - strand, within Echvi_4184at 5002.234 kb on - strand, within Echvi_4184at 5002.264 kb on + strand, within Echvi_4184at 5002.331 kb on + strandat 5002.333 kb on + strandat 5002.333 kb on + strandat 5002.334 kb on - strandat 5002.364 kb on + strandat 5002.365 kb on - strandat 5002.381 kb on + strandat 5002.382 kb on - strandat 5002.386 kb on + strandat 5002.387 kb on - strandat 5002.429 kb on - strand, within Echvi_4185at 5002.450 kb on + strand, within Echvi_4185at 5002.450 kb on + strand, within Echvi_4185at 5002.463 kb on + strand, within Echvi_4185at 5002.463 kb on + strand, within Echvi_4185at 5002.464 kb on - strand, within Echvi_4185at 5002.476 kb on - strand, within Echvi_4185at 5002.498 kb on + strand, within Echvi_4185at 5002.513 kb on - strand, within Echvi_4185at 5002.513 kb on - strand, within Echvi_4185at 5002.513 kb on - strand, within Echvi_4185at 5002.518 kb on + strand, within Echvi_4185at 5002.652 kb on + strand, within Echvi_4185at 5002.654 kb on + strand, within Echvi_4185at 5002.654 kb on + strand, within Echvi_4185at 5002.655 kb on - strand, within Echvi_4185at 5002.680 kb on - strand, within Echvi_4185at 5002.836 kb on + strand, within Echvi_4185at 5002.836 kb on + strand, within Echvi_4185at 5002.890 kb on - strand, within Echvi_4185at 5002.911 kb on - strand, within Echvi_4185at 5002.975 kb on + strand, within Echvi_4185at 5002.976 kb on - strand, within Echvi_4185at 5002.976 kb on - strand, within Echvi_4185at 5003.127 kb on + strand, within Echvi_4185at 5003.127 kb on + strand, within Echvi_4185at 5003.156 kb on + strand, within Echvi_4185at 5003.156 kb on + strand, within Echvi_4185at 5003.157 kb on - strand, within Echvi_4185at 5003.157 kb on - strand, within Echvi_4185at 5003.161 kb on + strand, within Echvi_4185at 5003.161 kb on + strand, within Echvi_4185at 5003.162 kb on - strand, within Echvi_4185at 5003.162 kb on - strand, within Echvi_4185at 5003.255 kb on + strand, within Echvi_4185at 5003.262 kb on + strand, within Echvi_4185at 5003.263 kb on - strand, within Echvi_4185at 5003.263 kb on - strand, within Echvi_4185at 5003.292 kb on + strand, within Echvi_4185at 5003.292 kb on + strand, within Echvi_4185at 5003.292 kb on + strand, within Echvi_4185at 5003.298 kb on - strand, within Echvi_4185at 5003.298 kb on - strand, within Echvi_4185

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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5,001,011 + +0.3
5,001,011 + -0.1
5,001,168 + -0.3
5,001,169 - +0.4
5,001,224 + +0.6
5,001,224 + -2.3
5,001,225 - -0.2
5,001,225 - +1.6
5,001,225 - +1.2
5,001,225 - +0.1
5,001,225 - -0.3
5,001,264 - +0.5
5,001,474 + +0.4
5,001,475 - -0.4
5,001,479 - -0.7
5,001,482 - +2.1
5,001,482 - -1.0
5,001,503 + -0.3
5,001,518 + -0.1
5,001,519 - +0.4
5,001,519 - -0.5
5,001,524 - -0.3
5,001,528 - -1.3
5,001,528 - -0.1
5,001,540 + +1.2
5,001,541 - -0.0
5,001,541 - -0.5
5,001,541 - +0.8
5,001,615 + -0.6
5,001,666 + +0.1
5,001,666 + -0.2
5,001,701 + -0.0
5,001,796 + +0.8
5,001,797 - +0.2
5,001,829 + -0.4
5,001,829 + +0.1
5,001,852 - -0.4
5,001,888 - -0.5
5,001,888 - -1.0
5,001,896 - +0.1
5,001,896 - -0.4
5,001,896 - +0.6
5,001,896 - -0.7
5,001,898 - -0.1
5,001,929 - -0.3
5,002,066 - Echvi_4184 0.26 -0.5
5,002,078 + Echvi_4184 0.30 +0.4
5,002,078 + Echvi_4184 0.30 +1.6
5,002,125 + Echvi_4184 0.45 +1.8
5,002,126 - Echvi_4184 0.45 +0.1
5,002,171 - Echvi_4184 0.59 +0.1
5,002,210 - Echvi_4184 0.71 +0.7
5,002,210 - Echvi_4184 0.71 -0.6
5,002,210 - Echvi_4184 0.71 +0.7
5,002,234 - Echvi_4184 0.79 +1.2
5,002,234 - Echvi_4184 0.79 +0.8
5,002,234 - Echvi_4184 0.79 -0.5
5,002,234 - Echvi_4184 0.79 -0.5
5,002,264 + Echvi_4184 0.88 +0.9
5,002,331 + +0.1
5,002,333 + -0.5
5,002,333 + +0.7
5,002,334 - +0.4
5,002,364 + -0.4
5,002,365 - -0.7
5,002,381 + +0.1
5,002,382 - -0.5
5,002,386 + -1.1
5,002,387 - +0.7
5,002,429 - Echvi_4185 0.10 +0.4
5,002,450 + Echvi_4185 0.12 -3.1
5,002,450 + Echvi_4185 0.12 -0.5
5,002,463 + Echvi_4185 0.13 +0.1
5,002,463 + Echvi_4185 0.13 -0.6
5,002,464 - Echvi_4185 0.13 -1.3
5,002,476 - Echvi_4185 0.14 -0.8
5,002,498 + Echvi_4185 0.16 -0.7
5,002,513 - Echvi_4185 0.17 -0.3
5,002,513 - Echvi_4185 0.17 -1.6
5,002,513 - Echvi_4185 0.17 -0.1
5,002,518 + Echvi_4185 0.17 -0.7
5,002,652 + Echvi_4185 0.28 -0.1
5,002,654 + Echvi_4185 0.28 +0.4
5,002,654 + Echvi_4185 0.28 +0.9
5,002,655 - Echvi_4185 0.28 -0.5
5,002,680 - Echvi_4185 0.30 -0.3
5,002,836 + Echvi_4185 0.42 -0.6
5,002,836 + Echvi_4185 0.42 -0.9
5,002,890 - Echvi_4185 0.47 +0.1
5,002,911 - Echvi_4185 0.48 -1.6
5,002,975 + Echvi_4185 0.53 +0.7
5,002,976 - Echvi_4185 0.53 +0.4
5,002,976 - Echvi_4185 0.53 +0.4
5,003,127 + Echvi_4185 0.65 -2.3
5,003,127 + Echvi_4185 0.65 -0.6
5,003,156 + Echvi_4185 0.68 -2.1
5,003,156 + Echvi_4185 0.68 -1.5
5,003,157 - Echvi_4185 0.68 -0.3
5,003,157 - Echvi_4185 0.68 -2.2
5,003,161 + Echvi_4185 0.68 +0.2
5,003,161 + Echvi_4185 0.68 +0.1
5,003,162 - Echvi_4185 0.68 -0.0
5,003,162 - Echvi_4185 0.68 +0.3
5,003,255 + Echvi_4185 0.75 +0.7
5,003,262 + Echvi_4185 0.76 -0.5
5,003,263 - Echvi_4185 0.76 +0.5
5,003,263 - Echvi_4185 0.76 -1.2
5,003,292 + Echvi_4185 0.78 -1.5
5,003,292 + Echvi_4185 0.78 +0.7
5,003,292 + Echvi_4185 0.78 +0.1
5,003,298 - Echvi_4185 0.79 +0.1
5,003,298 - Echvi_4185 0.79 +1.1

Or see this region's nucleotide sequence