Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4145

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4142 and Echvi_4143 are separated by 88 nucleotidesEchvi_4143 and Echvi_4144 are separated by 77 nucleotidesEchvi_4144 and Echvi_4145 are separated by 216 nucleotidesEchvi_4145 and Echvi_4146 are separated by 76 nucleotides Echvi_4142: Echvi_4142 - Arabinose efflux permease, at 4,959,459 to 4,960,631 _4142 Echvi_4143: Echvi_4143 - hypothetical protein, at 4,960,720 to 4,961,046 _4143 Echvi_4144: Echvi_4144 - hypothetical protein, at 4,961,124 to 4,961,393 _4144 Echvi_4145: Echvi_4145 - Uncharacterized protein conserved in bacteria, at 4,961,610 to 4,961,975 _4145 Echvi_4146: Echvi_4146 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 4,962,052 to 4,963,395 _4146 Position (kb) 4961 4962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4960.718 kb on + strandat 4960.721 kb on + strandat 4960.858 kb on + strand, within Echvi_4143at 4960.858 kb on + strand, within Echvi_4143at 4960.859 kb on - strand, within Echvi_4143at 4960.959 kb on + strand, within Echvi_4143at 4960.959 kb on + strand, within Echvi_4143at 4960.960 kb on - strand, within Echvi_4143at 4961.001 kb on + strand, within Echvi_4143at 4961.002 kb on - strand, within Echvi_4143at 4961.013 kb on + strand, within Echvi_4143at 4961.013 kb on + strand, within Echvi_4143at 4961.014 kb on - strandat 4961.014 kb on - strandat 4961.014 kb on - strandat 4961.046 kb on + strandat 4961.047 kb on - strandat 4961.106 kb on - strandat 4961.126 kb on - strandat 4961.166 kb on + strand, within Echvi_4144at 4961.237 kb on - strand, within Echvi_4144at 4961.237 kb on - strand, within Echvi_4144at 4961.237 kb on - strand, within Echvi_4144at 4961.320 kb on - strand, within Echvi_4144at 4961.328 kb on + strand, within Echvi_4144at 4961.329 kb on - strand, within Echvi_4144at 4961.334 kb on - strand, within Echvi_4144at 4961.373 kb on + strandat 4961.374 kb on - strandat 4961.462 kb on + strandat 4961.462 kb on + strandat 4961.462 kb on + strandat 4961.467 kb on + strandat 4961.493 kb on - strandat 4961.493 kb on - strandat 4961.569 kb on + strandat 4961.646 kb on + strandat 4961.646 kb on + strandat 4961.646 kb on + strandat 4961.647 kb on - strand, within Echvi_4145at 4961.655 kb on + strand, within Echvi_4145at 4961.676 kb on - strand, within Echvi_4145at 4961.714 kb on + strand, within Echvi_4145at 4961.777 kb on + strand, within Echvi_4145at 4961.814 kb on + strand, within Echvi_4145at 4961.819 kb on - strand, within Echvi_4145at 4961.934 kb on + strand, within Echvi_4145at 4961.946 kb on + strandat 4961.947 kb on - strandat 4962.061 kb on - strandat 4962.061 kb on - strandat 4962.089 kb on + strandat 4962.095 kb on + strandat 4962.095 kb on + strandat 4962.096 kb on - strandat 4962.096 kb on - strandat 4962.110 kb on - strandat 4962.110 kb on - strandat 4962.110 kb on - strandat 4962.118 kb on + strandat 4962.186 kb on + strandat 4962.187 kb on - strand, within Echvi_4146at 4962.213 kb on + strand, within Echvi_4146at 4962.230 kb on + strand, within Echvi_4146at 4962.230 kb on + strand, within Echvi_4146at 4962.230 kb on + strand, within Echvi_4146at 4962.236 kb on + strand, within Echvi_4146at 4962.236 kb on + strand, within Echvi_4146at 4962.237 kb on - strand, within Echvi_4146at 4962.237 kb on - strand, within Echvi_4146at 4962.237 kb on - strand, within Echvi_4146at 4962.237 kb on - strand, within Echvi_4146at 4962.249 kb on + strand, within Echvi_4146at 4962.266 kb on + strand, within Echvi_4146at 4962.267 kb on - strand, within Echvi_4146at 4962.304 kb on + strand, within Echvi_4146at 4962.304 kb on + strand, within Echvi_4146at 4962.310 kb on + strand, within Echvi_4146at 4962.310 kb on + strand, within Echvi_4146at 4962.310 kb on + strand, within Echvi_4146at 4962.311 kb on - strand, within Echvi_4146at 4962.311 kb on - strand, within Echvi_4146at 4962.311 kb on - strand, within Echvi_4146at 4962.311 kb on - strand, within Echvi_4146at 4962.336 kb on + strand, within Echvi_4146at 4962.336 kb on + strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.350 kb on - strand, within Echvi_4146at 4962.359 kb on - strand, within Echvi_4146at 4962.387 kb on + strand, within Echvi_4146at 4962.389 kb on + strand, within Echvi_4146at 4962.417 kb on + strand, within Echvi_4146at 4962.477 kb on + strand, within Echvi_4146at 4962.477 kb on + strand, within Echvi_4146at 4962.477 kb on + strand, within Echvi_4146at 4962.477 kb on + strand, within Echvi_4146at 4962.480 kb on + strand, within Echvi_4146at 4962.481 kb on - strand, within Echvi_4146at 4962.481 kb on - strand, within Echvi_4146at 4962.483 kb on + strand, within Echvi_4146at 4962.484 kb on - strand, within Echvi_4146at 4962.503 kb on + strand, within Echvi_4146at 4962.503 kb on + strand, within Echvi_4146at 4962.503 kb on + strand, within Echvi_4146at 4962.504 kb on - strand, within Echvi_4146at 4962.504 kb on - strand, within Echvi_4146at 4962.504 kb on - strand, within Echvi_4146at 4962.504 kb on - strand, within Echvi_4146at 4962.505 kb on + strand, within Echvi_4146at 4962.505 kb on + strand, within Echvi_4146at 4962.506 kb on - strand, within Echvi_4146at 4962.506 kb on - strand, within Echvi_4146at 4962.506 kb on - strand, within Echvi_4146at 4962.510 kb on + strand, within Echvi_4146at 4962.510 kb on + strand, within Echvi_4146at 4962.510 kb on + strand, within Echvi_4146at 4962.517 kb on - strand, within Echvi_4146at 4962.533 kb on + strand, within Echvi_4146at 4962.533 kb on + strand, within Echvi_4146at 4962.533 kb on + strand, within Echvi_4146at 4962.534 kb on - strand, within Echvi_4146at 4962.629 kb on - strand, within Echvi_4146at 4962.679 kb on + strand, within Echvi_4146at 4962.680 kb on - strand, within Echvi_4146at 4962.682 kb on - strand, within Echvi_4146at 4962.730 kb on + strand, within Echvi_4146at 4962.730 kb on + strand, within Echvi_4146at 4962.730 kb on + strand, within Echvi_4146at 4962.731 kb on - strand, within Echvi_4146at 4962.738 kb on + strand, within Echvi_4146at 4962.773 kb on - strand, within Echvi_4146at 4962.773 kb on - strand, within Echvi_4146at 4962.777 kb on + strand, within Echvi_4146at 4962.778 kb on - strand, within Echvi_4146at 4962.822 kb on + strand, within Echvi_4146at 4962.825 kb on + strand, within Echvi_4146at 4962.873 kb on + strand, within Echvi_4146at 4962.874 kb on - strand, within Echvi_4146at 4962.874 kb on - strand, within Echvi_4146at 4962.875 kb on + strand, within Echvi_4146at 4962.875 kb on + strand, within Echvi_4146at 4962.876 kb on - strand, within Echvi_4146at 4962.897 kb on + strand, within Echvi_4146at 4962.897 kb on + strand, within Echvi_4146at 4962.897 kb on + strand, within Echvi_4146

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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4,960,718 + +0.5
4,960,721 + -1.9
4,960,858 + Echvi_4143 0.42 -0.6
4,960,858 + Echvi_4143 0.42 -0.1
4,960,859 - Echvi_4143 0.43 -2.1
4,960,959 + Echvi_4143 0.73 +0.2
4,960,959 + Echvi_4143 0.73 -0.4
4,960,960 - Echvi_4143 0.73 -0.6
4,961,001 + Echvi_4143 0.86 -0.5
4,961,002 - Echvi_4143 0.86 -0.1
4,961,013 + Echvi_4143 0.90 -0.8
4,961,013 + Echvi_4143 0.90 -0.1
4,961,014 - +0.4
4,961,014 - +0.1
4,961,014 - -0.4
4,961,046 + -0.3
4,961,047 - -0.3
4,961,106 - -0.0
4,961,126 - -1.0
4,961,166 + Echvi_4144 0.16 +0.7
4,961,237 - Echvi_4144 0.42 -1.1
4,961,237 - Echvi_4144 0.42 -2.6
4,961,237 - Echvi_4144 0.42 -0.5
4,961,320 - Echvi_4144 0.73 -1.2
4,961,328 + Echvi_4144 0.76 -0.3
4,961,329 - Echvi_4144 0.76 +0.1
4,961,334 - Echvi_4144 0.78 -0.2
4,961,373 + -2.0
4,961,374 - -0.3
4,961,462 + +0.5
4,961,462 + -0.4
4,961,462 + -0.7
4,961,467 + +0.8
4,961,493 - +0.2
4,961,493 - -1.1
4,961,569 + +0.4
4,961,646 + +0.2
4,961,646 + -0.9
4,961,646 + -1.1
4,961,647 - Echvi_4145 0.10 -0.7
4,961,655 + Echvi_4145 0.12 -0.7
4,961,676 - Echvi_4145 0.18 +0.3
4,961,714 + Echvi_4145 0.28 +0.7
4,961,777 + Echvi_4145 0.46 -0.8
4,961,814 + Echvi_4145 0.56 +0.6
4,961,819 - Echvi_4145 0.57 -2.0
4,961,934 + Echvi_4145 0.89 -0.3
4,961,946 + +0.6
4,961,947 - +0.0
4,962,061 - -0.6
4,962,061 - -0.0
4,962,089 + -0.3
4,962,095 + +0.1
4,962,095 + +0.4
4,962,096 - +0.2
4,962,096 - +0.5
4,962,110 - +0.3
4,962,110 - -0.0
4,962,110 - +0.7
4,962,118 + +0.6
4,962,186 + +0.6
4,962,187 - Echvi_4146 0.10 -0.1
4,962,213 + Echvi_4146 0.12 +0.1
4,962,230 + Echvi_4146 0.13 -0.6
4,962,230 + Echvi_4146 0.13 -1.5
4,962,230 + Echvi_4146 0.13 -0.7
4,962,236 + Echvi_4146 0.14 +0.3
4,962,236 + Echvi_4146 0.14 +0.0
4,962,237 - Echvi_4146 0.14 -1.0
4,962,237 - Echvi_4146 0.14 -0.1
4,962,237 - Echvi_4146 0.14 -1.0
4,962,237 - Echvi_4146 0.14 -0.9
4,962,249 + Echvi_4146 0.15 -0.1
4,962,266 + Echvi_4146 0.16 -2.2
4,962,267 - Echvi_4146 0.16 +0.0
4,962,304 + Echvi_4146 0.19 +1.0
4,962,304 + Echvi_4146 0.19 -0.4
4,962,310 + Echvi_4146 0.19 +0.8
4,962,310 + Echvi_4146 0.19 +0.4
4,962,310 + Echvi_4146 0.19 +0.4
4,962,311 - Echvi_4146 0.19 -0.4
4,962,311 - Echvi_4146 0.19 -0.7
4,962,311 - Echvi_4146 0.19 +0.5
4,962,311 - Echvi_4146 0.19 +1.4
4,962,336 + Echvi_4146 0.21 -1.8
4,962,336 + Echvi_4146 0.21 +0.0
4,962,341 - Echvi_4146 0.22 +0.2
4,962,341 - Echvi_4146 0.22 -0.2
4,962,341 - Echvi_4146 0.22 +0.4
4,962,341 - Echvi_4146 0.22 -0.7
4,962,341 - Echvi_4146 0.22 -1.0
4,962,350 - Echvi_4146 0.22 -0.2
4,962,359 - Echvi_4146 0.23 +0.7
4,962,387 + Echvi_4146 0.25 -0.7
4,962,389 + Echvi_4146 0.25 -0.5
4,962,417 + Echvi_4146 0.27 -0.1
4,962,477 + Echvi_4146 0.32 +0.4
4,962,477 + Echvi_4146 0.32 -0.6
4,962,477 + Echvi_4146 0.32 +0.5
4,962,477 + Echvi_4146 0.32 +0.1
4,962,480 + Echvi_4146 0.32 +0.2
4,962,481 - Echvi_4146 0.32 -0.2
4,962,481 - Echvi_4146 0.32 +1.6
4,962,483 + Echvi_4146 0.32 -0.1
4,962,484 - Echvi_4146 0.32 +0.9
4,962,503 + Echvi_4146 0.34 +0.0
4,962,503 + Echvi_4146 0.34 -0.1
4,962,503 + Echvi_4146 0.34 -3.1
4,962,504 - Echvi_4146 0.34 +0.6
4,962,504 - Echvi_4146 0.34 +0.7
4,962,504 - Echvi_4146 0.34 +0.1
4,962,504 - Echvi_4146 0.34 +0.5
4,962,505 + Echvi_4146 0.34 -0.2
4,962,505 + Echvi_4146 0.34 -1.0
4,962,506 - Echvi_4146 0.34 +1.6
4,962,506 - Echvi_4146 0.34 -0.2
4,962,506 - Echvi_4146 0.34 +1.3
4,962,510 + Echvi_4146 0.34 -0.1
4,962,510 + Echvi_4146 0.34 -0.3
4,962,510 + Echvi_4146 0.34 -0.2
4,962,517 - Echvi_4146 0.35 -0.1
4,962,533 + Echvi_4146 0.36 +0.3
4,962,533 + Echvi_4146 0.36 +0.2
4,962,533 + Echvi_4146 0.36 +0.5
4,962,534 - Echvi_4146 0.36 +0.9
4,962,629 - Echvi_4146 0.43 +1.1
4,962,679 + Echvi_4146 0.47 -0.2
4,962,680 - Echvi_4146 0.47 +0.0
4,962,682 - Echvi_4146 0.47 +1.8
4,962,730 + Echvi_4146 0.50 +0.5
4,962,730 + Echvi_4146 0.50 +1.2
4,962,730 + Echvi_4146 0.50 -0.0
4,962,731 - Echvi_4146 0.51 +1.0
4,962,738 + Echvi_4146 0.51 +0.2
4,962,773 - Echvi_4146 0.54 +1.3
4,962,773 - Echvi_4146 0.54 -1.0
4,962,777 + Echvi_4146 0.54 -0.7
4,962,778 - Echvi_4146 0.54 -2.2
4,962,822 + Echvi_4146 0.57 +0.5
4,962,825 + Echvi_4146 0.58 +0.5
4,962,873 + Echvi_4146 0.61 -0.8
4,962,874 - Echvi_4146 0.61 +0.7
4,962,874 - Echvi_4146 0.61 -0.0
4,962,875 + Echvi_4146 0.61 -0.1
4,962,875 + Echvi_4146 0.61 -0.2
4,962,876 - Echvi_4146 0.61 +0.4
4,962,897 + Echvi_4146 0.63 +0.9
4,962,897 + Echvi_4146 0.63 -0.5
4,962,897 + Echvi_4146 0.63 +0.3

Or see this region's nucleotide sequence