Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4034

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4033 and Echvi_4034 are separated by 321 nucleotidesEchvi_4034 and Echvi_4035 are separated by 342 nucleotides Echvi_4033: Echvi_4033 - glutamate 5-kinase (EC 2.7.2.11) (from data), at 4,829,932 to 4,831,020 _4033 Echvi_4034: Echvi_4034 - hypothetical protein, at 4,831,342 to 4,832,262 _4034 Echvi_4035: Echvi_4035 - Excinuclease ATPase subunit, at 4,832,605 to 4,837,092 _4035 Position (kb) 4831 4832 4833Strain fitness (log2 ratio) -2 -1 0 1 2at 4830.381 kb on + strand, within Echvi_4033at 4830.580 kb on - strand, within Echvi_4033at 4830.667 kb on + strand, within Echvi_4033at 4830.690 kb on + strand, within Echvi_4033at 4830.694 kb on + strand, within Echvi_4033at 4830.755 kb on - strand, within Echvi_4033at 4830.755 kb on - strand, within Echvi_4033at 4830.759 kb on + strand, within Echvi_4033at 4830.929 kb on - strandat 4830.994 kb on + strandat 4830.994 kb on + strandat 4830.994 kb on + strandat 4830.995 kb on - strandat 4830.995 kb on - strandat 4831.014 kb on + strandat 4831.014 kb on + strandat 4831.014 kb on + strandat 4831.015 kb on - strandat 4831.019 kb on - strandat 4831.019 kb on - strandat 4831.019 kb on - strandat 4831.094 kb on + strandat 4831.167 kb on + strandat 4831.271 kb on + strandat 4831.274 kb on - strandat 4831.279 kb on + strandat 4831.279 kb on + strandat 4831.290 kb on + strandat 4831.391 kb on + strandat 4831.392 kb on - strandat 4831.440 kb on + strand, within Echvi_4034at 4831.441 kb on - strand, within Echvi_4034at 4831.444 kb on - strand, within Echvi_4034at 4831.444 kb on - strand, within Echvi_4034at 4831.499 kb on + strand, within Echvi_4034at 4831.499 kb on + strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.501 kb on + strand, within Echvi_4034at 4831.501 kb on + strand, within Echvi_4034at 4831.502 kb on - strand, within Echvi_4034at 4831.641 kb on + strand, within Echvi_4034at 4831.641 kb on + strand, within Echvi_4034at 4831.642 kb on - strand, within Echvi_4034at 4831.737 kb on - strand, within Echvi_4034at 4831.831 kb on - strand, within Echvi_4034at 4831.882 kb on + strand, within Echvi_4034at 4831.882 kb on + strand, within Echvi_4034at 4831.883 kb on - strand, within Echvi_4034at 4831.883 kb on - strand, within Echvi_4034at 4831.885 kb on - strand, within Echvi_4034at 4831.948 kb on - strand, within Echvi_4034at 4831.974 kb on + strand, within Echvi_4034at 4831.975 kb on - strand, within Echvi_4034at 4832.247 kb on + strandat 4832.270 kb on + strandat 4832.271 kb on - strandat 4832.325 kb on - strandat 4832.325 kb on - strandat 4832.357 kb on + strandat 4832.358 kb on - strandat 4832.358 kb on - strandat 4832.404 kb on - strandat 4832.410 kb on + strandat 4832.463 kb on + strandat 4832.464 kb on - strandat 4832.464 kb on - strandat 4832.469 kb on + strandat 4832.469 kb on + strandat 4832.469 kb on + strandat 4832.470 kb on - strandat 4832.470 kb on - strandat 4832.496 kb on + strandat 4832.534 kb on + strandat 4832.538 kb on - strandat 4832.556 kb on - strandat 4832.556 kb on - strandat 4832.572 kb on - strandat 4832.611 kb on + strandat 4832.641 kb on + strandat 4832.670 kb on + strandat 4832.687 kb on - strandat 4832.687 kb on - strandat 4832.726 kb on + strandat 4832.908 kb on - strandat 4832.911 kb on + strandat 4832.911 kb on + strandat 4832.912 kb on - strandat 4832.912 kb on - strandat 4832.912 kb on - strandat 4832.912 kb on - strandat 4832.912 kb on - strandat 4832.912 kb on - strandat 4833.014 kb on + strandat 4833.175 kb on - strand, within Echvi_4035at 4833.187 kb on + strand, within Echvi_4035at 4833.211 kb on + strand, within Echvi_4035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
4,830,381 + Echvi_4033 0.41 -1.1
4,830,580 - Echvi_4033 0.60 +1.0
4,830,667 + Echvi_4033 0.67 -0.2
4,830,690 + Echvi_4033 0.70 -0.9
4,830,694 + Echvi_4033 0.70 +1.1
4,830,755 - Echvi_4033 0.76 -0.2
4,830,755 - Echvi_4033 0.76 +0.0
4,830,759 + Echvi_4033 0.76 +0.3
4,830,929 - +0.1
4,830,994 + +0.4
4,830,994 + +0.7
4,830,994 + +0.2
4,830,995 - -0.1
4,830,995 - +0.3
4,831,014 + +0.4
4,831,014 + +0.6
4,831,014 + -0.7
4,831,015 - -1.4
4,831,019 - +0.2
4,831,019 - +0.8
4,831,019 - +0.2
4,831,094 + -0.4
4,831,167 + +0.2
4,831,271 + +0.3
4,831,274 - +0.4
4,831,279 + +0.5
4,831,279 + -0.5
4,831,290 + +0.5
4,831,391 + -1.7
4,831,392 - +0.3
4,831,440 + Echvi_4034 0.11 +0.2
4,831,441 - Echvi_4034 0.11 +1.5
4,831,444 - Echvi_4034 0.11 +1.6
4,831,444 - Echvi_4034 0.11 -0.1
4,831,499 + Echvi_4034 0.17 +0.6
4,831,499 + Echvi_4034 0.17 +0.6
4,831,500 - Echvi_4034 0.17 +0.4
4,831,500 - Echvi_4034 0.17 -2.4
4,831,500 - Echvi_4034 0.17 -0.2
4,831,500 - Echvi_4034 0.17 +0.2
4,831,500 - Echvi_4034 0.17 +0.6
4,831,501 + Echvi_4034 0.17 -0.2
4,831,501 + Echvi_4034 0.17 +0.2
4,831,502 - Echvi_4034 0.17 +0.1
4,831,641 + Echvi_4034 0.32 +0.4
4,831,641 + Echvi_4034 0.32 +1.1
4,831,642 - Echvi_4034 0.33 -0.8
4,831,737 - Echvi_4034 0.43 +0.6
4,831,831 - Echvi_4034 0.53 +0.0
4,831,882 + Echvi_4034 0.59 +0.5
4,831,882 + Echvi_4034 0.59 +0.1
4,831,883 - Echvi_4034 0.59 -0.0
4,831,883 - Echvi_4034 0.59 +0.2
4,831,885 - Echvi_4034 0.59 -1.6
4,831,948 - Echvi_4034 0.66 +1.2
4,831,974 + Echvi_4034 0.69 +0.6
4,831,975 - Echvi_4034 0.69 -0.0
4,832,247 + +0.3
4,832,270 + -0.0
4,832,271 - +0.6
4,832,325 - -0.7
4,832,325 - -0.1
4,832,357 + +1.1
4,832,358 - +0.9
4,832,358 - -0.2
4,832,404 - -0.5
4,832,410 + -0.4
4,832,463 + -0.2
4,832,464 - +0.6
4,832,464 - -0.2
4,832,469 + +0.1
4,832,469 + +1.8
4,832,469 + -0.8
4,832,470 - +0.2
4,832,470 - -0.8
4,832,496 + +0.6
4,832,534 + +0.5
4,832,538 - +0.5
4,832,556 - +0.8
4,832,556 - +0.2
4,832,572 - -0.5
4,832,611 + -1.0
4,832,641 + +0.8
4,832,670 + -0.5
4,832,687 - -1.9
4,832,687 - -0.6
4,832,726 + -0.1
4,832,908 - -0.2
4,832,911 + -1.4
4,832,911 + +0.2
4,832,912 - -0.6
4,832,912 - -0.7
4,832,912 - -1.9
4,832,912 - -0.2
4,832,912 - +0.2
4,832,912 - +1.3
4,833,014 + +0.4
4,833,175 - Echvi_4035 0.13 +0.3
4,833,187 + Echvi_4035 0.13 +0.1
4,833,211 + Echvi_4035 0.14 -0.3

Or see this region's nucleotide sequence