Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3996 and Echvi_3997 are separated by 57 nucleotides Echvi_3997 and Echvi_3998 are separated by 111 nucleotides Echvi_3998 and Echvi_3999 overlap by 29 nucleotides Echvi_3999 and Echvi_4000 are separated by 67 nucleotides Echvi_4000 and Echvi_4001 are separated by 244 nucleotides Echvi_4001 and Echvi_4002 are separated by 248 nucleotides
Echvi_3996: Echvi_3996 - RNA polymerase sigma factor, sigma-70 family, at 4,791,319 to 4,791,993
_3996
Echvi_3997: Echvi_3997 - hypothetical protein, at 4,792,051 to 4,792,158
_3997
Echvi_3998: Echvi_3998 - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, at 4,792,270 to 4,792,497
_3998
Echvi_3999: Echvi_3999 - hypothetical protein, at 4,792,469 to 4,792,588
_3999
Echvi_4000: Echvi_4000 - Metal-dependent hydrolase, at 4,792,656 to 4,793,528
_4000
Echvi_4001: Echvi_4001 - Uncharacterized protein conserved in bacteria, at 4,793,773 to 4,794,276
_4001
Echvi_4002: Echvi_4002 - Uncharacterized conserved protein, at 4,794,525 to 4,795,367
_4002
Position (kb)
4792
4793
4794 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4791.701 kb on + strand, within Echvi_3996 at 4791.701 kb on + strand, within Echvi_3996 at 4791.702 kb on - strand, within Echvi_3996 at 4791.702 kb on - strand, within Echvi_3996 at 4791.702 kb on - strand, within Echvi_3996 at 4791.742 kb on - strand, within Echvi_3996 at 4791.973 kb on - strand at 4792.018 kb on - strand at 4792.018 kb on - strand at 4792.063 kb on + strand, within Echvi_3997 at 4792.065 kb on + strand, within Echvi_3997 at 4792.065 kb on + strand, within Echvi_3997 at 4792.066 kb on - strand, within Echvi_3997 at 4792.161 kb on - strand at 4792.260 kb on + strand at 4792.261 kb on - strand at 4792.341 kb on + strand, within Echvi_3998 at 4792.374 kb on - strand, within Echvi_3998 at 4792.382 kb on + strand, within Echvi_3998 at 4792.530 kb on + strand, within Echvi_3999 at 4792.530 kb on + strand, within Echvi_3999 at 4792.550 kb on - strand, within Echvi_3999 at 4792.616 kb on + strand at 4792.641 kb on + strand at 4792.687 kb on + strand at 4792.820 kb on + strand, within Echvi_4000 at 4792.873 kb on + strand, within Echvi_4000 at 4792.923 kb on - strand, within Echvi_4000 at 4792.923 kb on - strand, within Echvi_4000 at 4792.932 kb on + strand, within Echvi_4000 at 4792.932 kb on + strand, within Echvi_4000 at 4792.943 kb on - strand, within Echvi_4000 at 4792.943 kb on - strand, within Echvi_4000 at 4793.084 kb on + strand, within Echvi_4000 at 4793.093 kb on + strand, within Echvi_4000 at 4793.093 kb on + strand, within Echvi_4000 at 4793.250 kb on - strand, within Echvi_4000 at 4793.286 kb on + strand, within Echvi_4000 at 4793.287 kb on - strand, within Echvi_4000 at 4793.326 kb on - strand, within Echvi_4000 at 4793.360 kb on + strand, within Echvi_4000 at 4793.361 kb on - strand, within Echvi_4000 at 4793.370 kb on - strand, within Echvi_4000 at 4793.370 kb on - strand, within Echvi_4000 at 4793.450 kb on + strand at 4793.467 kb on - strand at 4793.467 kb on - strand at 4793.612 kb on + strand at 4793.616 kb on + strand at 4793.616 kb on + strand at 4793.616 kb on + strand at 4793.639 kb on + strand at 4793.639 kb on + strand at 4793.639 kb on + strand at 4793.643 kb on - strand at 4793.645 kb on + strand at 4793.645 kb on + strand at 4793.645 kb on + strand at 4793.646 kb on - strand at 4793.646 kb on - strand at 4793.665 kb on - strand at 4793.689 kb on - strand at 4793.717 kb on + strand at 4793.717 kb on + strand at 4793.735 kb on + strand at 4793.735 kb on + strand at 4793.751 kb on + strand at 4793.772 kb on - strand at 4793.774 kb on + strand at 4793.775 kb on - strand at 4793.775 kb on - strand at 4793.775 kb on - strand at 4793.775 kb on - strand at 4793.775 kb on - strand at 4793.865 kb on - strand, within Echvi_4001 at 4793.879 kb on + strand, within Echvi_4001 at 4793.879 kb on + strand, within Echvi_4001 at 4793.879 kb on + strand, within Echvi_4001 at 4793.880 kb on - strand, within Echvi_4001 at 4793.880 kb on - strand, within Echvi_4001 at 4793.880 kb on - strand, within Echvi_4001 at 4793.880 kb on - strand, within Echvi_4001 at 4793.883 kb on + strand, within Echvi_4001 at 4793.884 kb on - strand, within Echvi_4001 at 4794.024 kb on + strand, within Echvi_4001 at 4794.024 kb on + strand, within Echvi_4001 at 4794.088 kb on + strand, within Echvi_4001 at 4794.088 kb on + strand, within Echvi_4001 at 4794.089 kb on - strand, within Echvi_4001 at 4794.089 kb on - strand, within Echvi_4001 at 4794.091 kb on - strand, within Echvi_4001 at 4794.312 kb on + strand at 4794.353 kb on + strand at 4794.354 kb on - strand at 4794.354 kb on - strand at 4794.385 kb on + strand at 4794.385 kb on + strand at 4794.436 kb on + strand at 4794.436 kb on + strand at 4794.526 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 4,791,701 + Echvi_3996 0.57 +0.5 4,791,701 + Echvi_3996 0.57 +0.4 4,791,702 - Echvi_3996 0.57 +2.3 4,791,702 - Echvi_3996 0.57 +0.6 4,791,702 - Echvi_3996 0.57 +1.5 4,791,742 - Echvi_3996 0.63 -1.3 4,791,973 - -0.9 4,792,018 - -0.5 4,792,018 - -0.1 4,792,063 + Echvi_3997 0.11 +0.3 4,792,065 + Echvi_3997 0.13 +0.5 4,792,065 + Echvi_3997 0.13 -1.9 4,792,066 - Echvi_3997 0.14 +0.1 4,792,161 - -1.6 4,792,260 + +0.4 4,792,261 - -0.5 4,792,341 + Echvi_3998 0.31 -0.8 4,792,374 - Echvi_3998 0.46 -0.3 4,792,382 + Echvi_3998 0.49 -0.5 4,792,530 + Echvi_3999 0.51 -2.3 4,792,530 + Echvi_3999 0.51 -1.0 4,792,550 - Echvi_3999 0.68 +0.1 4,792,616 + -0.5 4,792,641 + +0.1 4,792,687 + -0.6 4,792,820 + Echvi_4000 0.19 +1.3 4,792,873 + Echvi_4000 0.25 +0.1 4,792,923 - Echvi_4000 0.31 +0.7 4,792,923 - Echvi_4000 0.31 -0.8 4,792,932 + Echvi_4000 0.32 +1.2 4,792,932 + Echvi_4000 0.32 +0.7 4,792,943 - Echvi_4000 0.33 +0.3 4,792,943 - Echvi_4000 0.33 +0.9 4,793,084 + Echvi_4000 0.49 -0.5 4,793,093 + Echvi_4000 0.50 +0.7 4,793,093 + Echvi_4000 0.50 -0.4 4,793,250 - Echvi_4000 0.68 +0.9 4,793,286 + Echvi_4000 0.72 +0.6 4,793,287 - Echvi_4000 0.72 +0.7 4,793,326 - Echvi_4000 0.77 -1.3 4,793,360 + Echvi_4000 0.81 -1.0 4,793,361 - Echvi_4000 0.81 -0.5 4,793,370 - Echvi_4000 0.82 +1.6 4,793,370 - Echvi_4000 0.82 +0.9 4,793,450 + +0.7 4,793,467 - -0.1 4,793,467 - -0.2 4,793,612 + +0.0 4,793,616 + -2.0 4,793,616 + -0.8 4,793,616 + +1.2 4,793,639 + -0.1 4,793,639 + -1.3 4,793,639 + -1.4 4,793,643 - -0.9 4,793,645 + +1.3 4,793,645 + +0.5 4,793,645 + +0.6 4,793,646 - +1.0 4,793,646 - -0.3 4,793,665 - +0.5 4,793,689 - -0.7 4,793,717 + -0.0 4,793,717 + +0.0 4,793,735 + +0.1 4,793,735 + -0.8 4,793,751 + +1.2 4,793,772 - -1.1 4,793,774 + -0.1 4,793,775 - +1.2 4,793,775 - -0.5 4,793,775 - -2.7 4,793,775 - +0.7 4,793,775 - +0.9 4,793,865 - Echvi_4001 0.18 +1.2 4,793,879 + Echvi_4001 0.21 +0.1 4,793,879 + Echvi_4001 0.21 -1.4 4,793,879 + Echvi_4001 0.21 -0.2 4,793,880 - Echvi_4001 0.21 +0.2 4,793,880 - Echvi_4001 0.21 -0.0 4,793,880 - Echvi_4001 0.21 -0.3 4,793,880 - Echvi_4001 0.21 +0.4 4,793,883 + Echvi_4001 0.22 +0.2 4,793,884 - Echvi_4001 0.22 +0.4 4,794,024 + Echvi_4001 0.50 +0.6 4,794,024 + Echvi_4001 0.50 -0.1 4,794,088 + Echvi_4001 0.62 +0.1 4,794,088 + Echvi_4001 0.62 +1.1 4,794,089 - Echvi_4001 0.63 +1.5 4,794,089 - Echvi_4001 0.63 +0.1 4,794,091 - Echvi_4001 0.63 -1.7 4,794,312 + +0.7 4,794,353 + +0.1 4,794,354 - +0.4 4,794,354 - +0.1 4,794,385 + +0.3 4,794,385 + +0.2 4,794,436 + -0.2 4,794,436 + +0.3 4,794,526 + -0.2
Or see this region's nucleotide sequence