Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3635

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3634 and Echvi_3635 are separated by 596 nucleotidesEchvi_3635 and Echvi_3636 are separated by 25 nucleotides Echvi_3634: Echvi_3634 - Predicted dehydrogenases and related proteins, at 4,315,646 to 4,316,995 _3634 Echvi_3635: Echvi_3635 - Predicted dehydrogenases and related proteins, at 4,317,592 to 4,318,911 _3635 Echvi_3636: Echvi_3636 - Uncharacterized conserved protein, at 4,318,937 to 4,319,926 _3636 Position (kb) 4317 4318 4319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4316.675 kb on - strand, within Echvi_3634at 4316.696 kb on - strand, within Echvi_3634at 4316.696 kb on - strand, within Echvi_3634at 4316.701 kb on - strand, within Echvi_3634at 4316.781 kb on - strand, within Echvi_3634at 4316.873 kb on - strandat 4316.895 kb on + strandat 4316.895 kb on + strandat 4316.895 kb on + strandat 4316.895 kb on + strandat 4316.895 kb on + strandat 4316.895 kb on + strandat 4316.896 kb on - strandat 4316.896 kb on - strandat 4316.924 kb on - strandat 4316.990 kb on - strandat 4316.993 kb on + strandat 4316.993 kb on + strandat 4316.993 kb on + strandat 4316.994 kb on - strandat 4316.994 kb on - strandat 4316.994 kb on - strandat 4316.994 kb on - strandat 4316.994 kb on - strandat 4317.000 kb on - strandat 4317.001 kb on + strandat 4317.001 kb on + strandat 4317.002 kb on - strandat 4317.014 kb on + strandat 4317.059 kb on - strandat 4317.125 kb on + strandat 4317.126 kb on - strandat 4317.371 kb on + strandat 4317.394 kb on + strandat 4317.394 kb on + strandat 4317.394 kb on + strandat 4317.395 kb on - strandat 4317.401 kb on - strandat 4317.401 kb on - strandat 4317.413 kb on - strandat 4317.418 kb on - strandat 4317.495 kb on + strandat 4317.495 kb on + strandat 4317.496 kb on - strandat 4317.496 kb on - strandat 4317.510 kb on + strandat 4317.574 kb on + strandat 4317.575 kb on - strandat 4317.649 kb on + strandat 4317.649 kb on + strandat 4317.649 kb on + strandat 4317.650 kb on - strandat 4317.698 kb on - strandat 4317.698 kb on - strandat 4317.699 kb on + strandat 4317.708 kb on + strandat 4317.760 kb on + strand, within Echvi_3635at 4317.766 kb on - strand, within Echvi_3635at 4317.778 kb on - strand, within Echvi_3635at 4317.806 kb on + strand, within Echvi_3635at 4317.806 kb on + strand, within Echvi_3635at 4317.807 kb on - strand, within Echvi_3635at 4317.807 kb on - strand, within Echvi_3635at 4317.807 kb on - strand, within Echvi_3635at 4317.810 kb on + strand, within Echvi_3635at 4317.810 kb on + strand, within Echvi_3635at 4317.811 kb on - strand, within Echvi_3635at 4317.811 kb on - strand, within Echvi_3635at 4317.811 kb on - strand, within Echvi_3635at 4317.811 kb on - strand, within Echvi_3635at 4317.811 kb on - strand, within Echvi_3635at 4317.811 kb on - strand, within Echvi_3635at 4317.812 kb on + strand, within Echvi_3635at 4317.812 kb on + strand, within Echvi_3635at 4317.812 kb on + strand, within Echvi_3635at 4317.812 kb on + strand, within Echvi_3635at 4317.812 kb on + strand, within Echvi_3635at 4317.813 kb on - strand, within Echvi_3635at 4317.813 kb on - strand, within Echvi_3635at 4317.839 kb on - strand, within Echvi_3635at 4317.870 kb on + strand, within Echvi_3635at 4317.871 kb on - strand, within Echvi_3635at 4317.893 kb on + strand, within Echvi_3635at 4317.894 kb on - strand, within Echvi_3635at 4317.896 kb on - strand, within Echvi_3635at 4317.910 kb on + strand, within Echvi_3635at 4317.947 kb on + strand, within Echvi_3635at 4317.947 kb on + strand, within Echvi_3635at 4317.947 kb on + strand, within Echvi_3635at 4317.948 kb on - strand, within Echvi_3635at 4317.948 kb on - strand, within Echvi_3635at 4317.948 kb on - strand, within Echvi_3635at 4317.948 kb on - strand, within Echvi_3635at 4318.043 kb on + strand, within Echvi_3635at 4318.108 kb on - strand, within Echvi_3635at 4318.167 kb on + strand, within Echvi_3635at 4318.168 kb on - strand, within Echvi_3635at 4318.174 kb on + strand, within Echvi_3635at 4318.174 kb on + strand, within Echvi_3635at 4318.175 kb on - strand, within Echvi_3635at 4318.188 kb on + strand, within Echvi_3635at 4318.188 kb on + strand, within Echvi_3635at 4318.189 kb on - strand, within Echvi_3635at 4318.192 kb on - strand, within Echvi_3635at 4318.218 kb on - strand, within Echvi_3635at 4318.280 kb on - strand, within Echvi_3635at 4318.280 kb on - strand, within Echvi_3635at 4318.299 kb on - strand, within Echvi_3635at 4318.299 kb on - strand, within Echvi_3635at 4318.299 kb on - strand, within Echvi_3635at 4318.464 kb on + strand, within Echvi_3635at 4318.465 kb on - strand, within Echvi_3635at 4318.524 kb on + strand, within Echvi_3635at 4318.524 kb on + strand, within Echvi_3635at 4318.525 kb on - strand, within Echvi_3635at 4318.553 kb on - strand, within Echvi_3635at 4318.555 kb on + strand, within Echvi_3635at 4318.555 kb on + strand, within Echvi_3635at 4318.584 kb on + strand, within Echvi_3635at 4318.584 kb on + strand, within Echvi_3635at 4318.584 kb on + strand, within Echvi_3635at 4318.584 kb on + strand, within Echvi_3635at 4318.585 kb on - strand, within Echvi_3635at 4318.585 kb on - strand, within Echvi_3635at 4318.585 kb on - strand, within Echvi_3635at 4318.585 kb on - strand, within Echvi_3635at 4318.585 kb on - strand, within Echvi_3635at 4318.585 kb on - strand, within Echvi_3635at 4318.585 kb on - strand, within Echvi_3635at 4318.586 kb on + strand, within Echvi_3635at 4318.586 kb on + strand, within Echvi_3635at 4318.587 kb on - strand, within Echvi_3635at 4318.664 kb on + strand, within Echvi_3635at 4318.664 kb on + strand, within Echvi_3635at 4318.664 kb on + strand, within Echvi_3635at 4318.665 kb on - strand, within Echvi_3635at 4318.931 kb on - strandat 4318.938 kb on + strandat 4318.938 kb on + strandat 4318.939 kb on - strandat 4318.941 kb on + strandat 4318.942 kb on - strandat 4318.965 kb on + strandat 4318.968 kb on + strandat 4319.138 kb on + strand, within Echvi_3636at 4319.140 kb on + strand, within Echvi_3636at 4319.140 kb on + strand, within Echvi_3636at 4319.140 kb on + strand, within Echvi_3636at 4319.141 kb on - strand, within Echvi_3636at 4319.142 kb on + strand, within Echvi_3636at 4319.142 kb on + strand, within Echvi_3636at 4319.235 kb on + strand, within Echvi_3636at 4319.235 kb on + strand, within Echvi_3636at 4319.235 kb on + strand, within Echvi_3636at 4319.235 kb on + strand, within Echvi_3636at 4319.235 kb on + strand, within Echvi_3636at 4319.236 kb on - strand, within Echvi_3636at 4319.236 kb on - strand, within Echvi_3636at 4319.236 kb on - strand, within Echvi_3636at 4319.236 kb on - strand, within Echvi_3636at 4319.236 kb on - strand, within Echvi_3636at 4319.236 kb on - strand, within Echvi_3636at 4319.236 kb on - strand, within Echvi_3636at 4319.259 kb on - strand, within Echvi_3636at 4319.259 kb on - strand, within Echvi_3636at 4319.268 kb on + strand, within Echvi_3636at 4319.278 kb on - strand, within Echvi_3636at 4319.278 kb on - strand, within Echvi_3636at 4319.310 kb on - strand, within Echvi_3636at 4319.343 kb on + strand, within Echvi_3636at 4319.344 kb on - strand, within Echvi_3636at 4319.352 kb on + strand, within Echvi_3636at 4319.560 kb on - strand, within Echvi_3636at 4319.560 kb on - strand, within Echvi_3636at 4319.628 kb on + strand, within Echvi_3636at 4319.636 kb on - strand, within Echvi_3636at 4319.829 kb on + strandat 4319.880 kb on - strandat 4319.881 kb on + strandat 4319.892 kb on - strandat 4319.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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4,316,675 - Echvi_3634 0.76 -0.3
4,316,696 - Echvi_3634 0.78 -0.8
4,316,696 - Echvi_3634 0.78 +0.5
4,316,701 - Echvi_3634 0.78 -0.2
4,316,781 - Echvi_3634 0.84 +0.1
4,316,873 - -1.0
4,316,895 + -1.0
4,316,895 + -3.3
4,316,895 + -1.9
4,316,895 + -0.0
4,316,895 + +0.1
4,316,895 + +0.2
4,316,896 - -0.6
4,316,896 - -0.6
4,316,924 - -0.1
4,316,990 - +0.9
4,316,993 + +0.2
4,316,993 + -0.1
4,316,993 + -0.6
4,316,994 - +0.5
4,316,994 - +0.4
4,316,994 - +0.4
4,316,994 - +0.8
4,316,994 - +2.2
4,317,000 - -0.1
4,317,001 + +0.9
4,317,001 + -0.5
4,317,002 - +0.6
4,317,014 + -0.8
4,317,059 - -0.0
4,317,125 + +0.2
4,317,126 - -0.0
4,317,371 + +1.0
4,317,394 + -1.3
4,317,394 + +0.4
4,317,394 + -0.2
4,317,395 - -0.6
4,317,401 - +0.9
4,317,401 - -0.5
4,317,413 - +0.6
4,317,418 - -0.3
4,317,495 + +0.8
4,317,495 + -1.4
4,317,496 - -0.1
4,317,496 - +0.0
4,317,510 + +1.1
4,317,574 + +0.0
4,317,575 - -1.0
4,317,649 + -0.7
4,317,649 + -0.0
4,317,649 + -0.2
4,317,650 - +0.1
4,317,698 - -1.0
4,317,698 - +1.0
4,317,699 + -0.1
4,317,708 + -0.3
4,317,760 + Echvi_3635 0.13 +1.0
4,317,766 - Echvi_3635 0.13 -0.1
4,317,778 - Echvi_3635 0.14 +0.4
4,317,806 + Echvi_3635 0.16 +0.6
4,317,806 + Echvi_3635 0.16 +1.0
4,317,807 - Echvi_3635 0.16 -0.0
4,317,807 - Echvi_3635 0.16 +1.0
4,317,807 - Echvi_3635 0.16 -0.4
4,317,810 + Echvi_3635 0.17 -0.4
4,317,810 + Echvi_3635 0.17 -0.3
4,317,811 - Echvi_3635 0.17 -0.7
4,317,811 - Echvi_3635 0.17 +0.4
4,317,811 - Echvi_3635 0.17 -1.4
4,317,811 - Echvi_3635 0.17 +0.9
4,317,811 - Echvi_3635 0.17 -0.6
4,317,811 - Echvi_3635 0.17 -1.8
4,317,812 + Echvi_3635 0.17 -0.1
4,317,812 + Echvi_3635 0.17 -1.9
4,317,812 + Echvi_3635 0.17 -0.0
4,317,812 + Echvi_3635 0.17 +0.3
4,317,812 + Echvi_3635 0.17 +0.1
4,317,813 - Echvi_3635 0.17 +0.3
4,317,813 - Echvi_3635 0.17 -0.3
4,317,839 - Echvi_3635 0.19 +0.7
4,317,870 + Echvi_3635 0.21 -0.5
4,317,871 - Echvi_3635 0.21 +0.4
4,317,893 + Echvi_3635 0.23 +0.2
4,317,894 - Echvi_3635 0.23 -1.6
4,317,896 - Echvi_3635 0.23 -1.5
4,317,910 + Echvi_3635 0.24 +0.4
4,317,947 + Echvi_3635 0.27 -1.5
4,317,947 + Echvi_3635 0.27 +0.5
4,317,947 + Echvi_3635 0.27 -1.1
4,317,948 - Echvi_3635 0.27 -0.3
4,317,948 - Echvi_3635 0.27 -0.2
4,317,948 - Echvi_3635 0.27 -1.6
4,317,948 - Echvi_3635 0.27 +0.2
4,318,043 + Echvi_3635 0.34 +0.9
4,318,108 - Echvi_3635 0.39 -0.1
4,318,167 + Echvi_3635 0.44 -0.3
4,318,168 - Echvi_3635 0.44 +0.1
4,318,174 + Echvi_3635 0.44 -0.8
4,318,174 + Echvi_3635 0.44 -1.2
4,318,175 - Echvi_3635 0.44 -1.8
4,318,188 + Echvi_3635 0.45 -0.2
4,318,188 + Echvi_3635 0.45 -1.9
4,318,189 - Echvi_3635 0.45 -0.3
4,318,192 - Echvi_3635 0.45 +0.5
4,318,218 - Echvi_3635 0.47 +0.7
4,318,280 - Echvi_3635 0.52 -0.9
4,318,280 - Echvi_3635 0.52 -0.6
4,318,299 - Echvi_3635 0.54 -0.6
4,318,299 - Echvi_3635 0.54 +1.0
4,318,299 - Echvi_3635 0.54 +0.1
4,318,464 + Echvi_3635 0.66 +0.2
4,318,465 - Echvi_3635 0.66 +0.1
4,318,524 + Echvi_3635 0.71 -0.9
4,318,524 + Echvi_3635 0.71 +0.5
4,318,525 - Echvi_3635 0.71 +0.2
4,318,553 - Echvi_3635 0.73 +0.1
4,318,555 + Echvi_3635 0.73 -0.9
4,318,555 + Echvi_3635 0.73 +0.4
4,318,584 + Echvi_3635 0.75 -0.9
4,318,584 + Echvi_3635 0.75 +0.9
4,318,584 + Echvi_3635 0.75 -0.4
4,318,584 + Echvi_3635 0.75 -0.4
4,318,585 - Echvi_3635 0.75 +0.5
4,318,585 - Echvi_3635 0.75 -0.9
4,318,585 - Echvi_3635 0.75 -0.7
4,318,585 - Echvi_3635 0.75 +0.0
4,318,585 - Echvi_3635 0.75 -1.3
4,318,585 - Echvi_3635 0.75 +0.7
4,318,585 - Echvi_3635 0.75 +0.3
4,318,586 + Echvi_3635 0.75 -0.9
4,318,586 + Echvi_3635 0.75 -0.3
4,318,587 - Echvi_3635 0.75 -1.0
4,318,664 + Echvi_3635 0.81 -1.5
4,318,664 + Echvi_3635 0.81 +0.5
4,318,664 + Echvi_3635 0.81 -0.4
4,318,665 - Echvi_3635 0.81 +2.3
4,318,931 - -0.8
4,318,938 + +0.3
4,318,938 + -1.6
4,318,939 - -0.1
4,318,941 + +0.8
4,318,942 - -0.4
4,318,965 + -0.3
4,318,968 + -0.0
4,319,138 + Echvi_3636 0.20 +0.2
4,319,140 + Echvi_3636 0.21 -0.1
4,319,140 + Echvi_3636 0.21 +0.8
4,319,140 + Echvi_3636 0.21 -0.2
4,319,141 - Echvi_3636 0.21 +0.2
4,319,142 + Echvi_3636 0.21 +0.7
4,319,142 + Echvi_3636 0.21 -0.6
4,319,235 + Echvi_3636 0.30 +0.6
4,319,235 + Echvi_3636 0.30 +1.2
4,319,235 + Echvi_3636 0.30 -0.6
4,319,235 + Echvi_3636 0.30 -0.5
4,319,235 + Echvi_3636 0.30 -0.0
4,319,236 - Echvi_3636 0.30 +1.0
4,319,236 - Echvi_3636 0.30 -0.1
4,319,236 - Echvi_3636 0.30 +0.8
4,319,236 - Echvi_3636 0.30 -0.1
4,319,236 - Echvi_3636 0.30 -0.1
4,319,236 - Echvi_3636 0.30 +1.8
4,319,236 - Echvi_3636 0.30 +0.6
4,319,259 - Echvi_3636 0.33 -0.6
4,319,259 - Echvi_3636 0.33 +0.2
4,319,268 + Echvi_3636 0.33 -0.1
4,319,278 - Echvi_3636 0.34 +0.5
4,319,278 - Echvi_3636 0.34 +1.8
4,319,310 - Echvi_3636 0.38 -0.9
4,319,343 + Echvi_3636 0.41 -0.3
4,319,344 - Echvi_3636 0.41 +0.1
4,319,352 + Echvi_3636 0.42 -0.0
4,319,560 - Echvi_3636 0.63 +0.2
4,319,560 - Echvi_3636 0.63 +1.0
4,319,628 + Echvi_3636 0.70 +0.3
4,319,636 - Echvi_3636 0.71 +0.1
4,319,829 + -0.4
4,319,880 - -0.2
4,319,881 + +0.0
4,319,892 - +0.3
4,319,892 - -1.5

Or see this region's nucleotide sequence