Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3165

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3163 and Echvi_3164 are separated by 40 nucleotidesEchvi_3164 and Echvi_3165 are separated by 15 nucleotidesEchvi_3165 and Echvi_3166 are separated by 21 nucleotides Echvi_3163: Echvi_3163 - Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains, at 3,769,597 to 3,770,442 _3163 Echvi_3164: Echvi_3164 - hypothetical protein, at 3,770,483 to 3,770,737 _3164 Echvi_3165: Echvi_3165 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 3,770,753 to 3,772,129 _3165 Echvi_3166: Echvi_3166 - putative thymidine phosphorylase, at 3,772,151 to 3,773,653 _3166 Position (kb) 3770 3771 3772 3773Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3769.789 kb on - strand, within Echvi_3163at 3769.820 kb on - strand, within Echvi_3163at 3769.909 kb on - strand, within Echvi_3163at 3769.927 kb on - strand, within Echvi_3163at 3769.965 kb on - strand, within Echvi_3163at 3769.990 kb on + strand, within Echvi_3163at 3769.990 kb on + strand, within Echvi_3163at 3769.991 kb on - strand, within Echvi_3163at 3769.992 kb on + strand, within Echvi_3163at 3769.992 kb on + strand, within Echvi_3163at 3769.993 kb on - strand, within Echvi_3163at 3770.008 kb on + strand, within Echvi_3163at 3770.035 kb on - strand, within Echvi_3163at 3770.051 kb on + strand, within Echvi_3163at 3770.052 kb on - strand, within Echvi_3163at 3770.052 kb on - strand, within Echvi_3163at 3770.052 kb on - strand, within Echvi_3163at 3770.053 kb on + strand, within Echvi_3163at 3770.054 kb on - strand, within Echvi_3163at 3770.054 kb on - strand, within Echvi_3163at 3770.054 kb on - strand, within Echvi_3163at 3770.054 kb on - strand, within Echvi_3163at 3770.054 kb on - strand, within Echvi_3163at 3770.054 kb on - strand, within Echvi_3163at 3770.055 kb on + strand, within Echvi_3163at 3770.056 kb on - strand, within Echvi_3163at 3770.138 kb on - strand, within Echvi_3163at 3770.138 kb on - strand, within Echvi_3163at 3770.138 kb on - strand, within Echvi_3163at 3770.138 kb on - strand, within Echvi_3163at 3770.196 kb on + strand, within Echvi_3163at 3770.243 kb on + strand, within Echvi_3163at 3770.244 kb on - strand, within Echvi_3163at 3770.244 kb on - strand, within Echvi_3163at 3770.244 kb on - strand, within Echvi_3163at 3770.244 kb on - strand, within Echvi_3163at 3770.244 kb on - strand, within Echvi_3163at 3770.247 kb on + strand, within Echvi_3163at 3770.247 kb on + strand, within Echvi_3163at 3770.259 kb on - strand, within Echvi_3163at 3770.259 kb on - strand, within Echvi_3163at 3770.277 kb on - strand, within Echvi_3163at 3770.335 kb on - strand, within Echvi_3163at 3770.433 kb on - strandat 3770.577 kb on + strand, within Echvi_3164at 3770.584 kb on - strand, within Echvi_3164at 3770.586 kb on + strand, within Echvi_3164at 3770.598 kb on + strand, within Echvi_3164at 3770.598 kb on + strand, within Echvi_3164at 3770.598 kb on + strand, within Echvi_3164at 3770.599 kb on - strand, within Echvi_3164at 3770.599 kb on - strand, within Echvi_3164at 3770.605 kb on - strand, within Echvi_3164at 3770.620 kb on + strand, within Echvi_3164at 3770.636 kb on + strand, within Echvi_3164at 3770.638 kb on + strand, within Echvi_3164at 3770.639 kb on - strand, within Echvi_3164at 3770.836 kb on + strandat 3770.837 kb on - strandat 3770.845 kb on - strandat 3770.972 kb on + strand, within Echvi_3165at 3770.973 kb on - strand, within Echvi_3165at 3771.062 kb on - strand, within Echvi_3165at 3771.173 kb on + strand, within Echvi_3165at 3771.174 kb on - strand, within Echvi_3165at 3771.174 kb on - strand, within Echvi_3165at 3771.266 kb on + strand, within Echvi_3165at 3771.266 kb on + strand, within Echvi_3165at 3771.267 kb on - strand, within Echvi_3165at 3771.267 kb on - strand, within Echvi_3165at 3771.267 kb on - strand, within Echvi_3165at 3771.280 kb on + strand, within Echvi_3165at 3771.280 kb on + strand, within Echvi_3165at 3771.281 kb on - strand, within Echvi_3165at 3771.281 kb on - strand, within Echvi_3165at 3771.282 kb on + strand, within Echvi_3165at 3771.283 kb on - strand, within Echvi_3165at 3771.283 kb on - strand, within Echvi_3165at 3771.334 kb on - strand, within Echvi_3165at 3771.334 kb on - strand, within Echvi_3165at 3771.337 kb on - strand, within Echvi_3165at 3771.372 kb on + strand, within Echvi_3165at 3771.373 kb on - strand, within Echvi_3165at 3771.375 kb on + strand, within Echvi_3165at 3771.375 kb on + strand, within Echvi_3165at 3771.376 kb on - strand, within Echvi_3165at 3771.376 kb on - strand, within Echvi_3165at 3771.379 kb on + strand, within Echvi_3165at 3771.392 kb on + strand, within Echvi_3165at 3771.421 kb on - strand, within Echvi_3165at 3771.577 kb on - strand, within Echvi_3165at 3771.619 kb on + strand, within Echvi_3165at 3771.619 kb on + strand, within Echvi_3165at 3771.619 kb on + strand, within Echvi_3165at 3771.620 kb on - strand, within Echvi_3165at 3771.620 kb on - strand, within Echvi_3165at 3771.620 kb on - strand, within Echvi_3165at 3771.679 kb on + strand, within Echvi_3165at 3771.680 kb on - strand, within Echvi_3165at 3771.695 kb on + strand, within Echvi_3165at 3771.695 kb on + strand, within Echvi_3165at 3771.714 kb on + strand, within Echvi_3165at 3771.715 kb on - strand, within Echvi_3165at 3771.781 kb on + strand, within Echvi_3165at 3771.815 kb on - strand, within Echvi_3165at 3771.831 kb on + strand, within Echvi_3165at 3771.837 kb on - strand, within Echvi_3165at 3771.992 kb on - strandat 3772.023 kb on + strandat 3772.077 kb on - strandat 3772.105 kb on - strandat 3772.105 kb on - strandat 3772.105 kb on - strandat 3772.105 kb on - strandat 3772.106 kb on + strandat 3772.107 kb on - strandat 3772.123 kb on - strandat 3772.173 kb on + strandat 3772.196 kb on + strandat 3772.196 kb on + strandat 3772.215 kb on + strandat 3772.215 kb on + strandat 3772.215 kb on + strandat 3772.220 kb on + strandat 3772.220 kb on + strandat 3772.220 kb on + strandat 3772.220 kb on + strandat 3772.220 kb on + strandat 3772.278 kb on + strandat 3772.297 kb on + strandat 3772.319 kb on - strand, within Echvi_3166at 3772.319 kb on - strand, within Echvi_3166at 3772.337 kb on - strand, within Echvi_3166at 3772.405 kb on + strand, within Echvi_3166at 3772.412 kb on + strand, within Echvi_3166at 3772.413 kb on - strand, within Echvi_3166at 3772.413 kb on - strand, within Echvi_3166at 3772.433 kb on - strand, within Echvi_3166at 3772.435 kb on - strand, within Echvi_3166at 3772.484 kb on + strand, within Echvi_3166at 3772.487 kb on - strand, within Echvi_3166at 3772.487 kb on - strand, within Echvi_3166at 3772.487 kb on - strand, within Echvi_3166at 3772.494 kb on - strand, within Echvi_3166at 3772.494 kb on - strand, within Echvi_3166at 3772.555 kb on + strand, within Echvi_3166at 3772.556 kb on - strand, within Echvi_3166at 3772.556 kb on - strand, within Echvi_3166at 3772.596 kb on + strand, within Echvi_3166at 3772.596 kb on + strand, within Echvi_3166at 3772.597 kb on - strand, within Echvi_3166at 3772.606 kb on + strand, within Echvi_3166at 3772.675 kb on + strand, within Echvi_3166at 3772.675 kb on + strand, within Echvi_3166at 3772.675 kb on + strand, within Echvi_3166at 3772.676 kb on - strand, within Echvi_3166at 3772.676 kb on - strand, within Echvi_3166at 3772.696 kb on + strand, within Echvi_3166at 3772.696 kb on + strand, within Echvi_3166at 3772.741 kb on + strand, within Echvi_3166at 3772.742 kb on - strand, within Echvi_3166at 3772.742 kb on - strand, within Echvi_3166at 3772.742 kb on - strand, within Echvi_3166at 3772.742 kb on - strand, within Echvi_3166at 3772.742 kb on - strand, within Echvi_3166at 3772.742 kb on - strand, within Echvi_3166at 3772.742 kb on - strand, within Echvi_3166at 3772.745 kb on - strand, within Echvi_3166at 3772.745 kb on - strand, within Echvi_3166at 3772.795 kb on + strand, within Echvi_3166at 3772.796 kb on - strand, within Echvi_3166at 3772.796 kb on - strand, within Echvi_3166at 3772.807 kb on - strand, within Echvi_3166at 3772.849 kb on - strand, within Echvi_3166at 3772.849 kb on - strand, within Echvi_3166at 3772.896 kb on + strand, within Echvi_3166at 3772.974 kb on + strand, within Echvi_3166at 3772.975 kb on - strand, within Echvi_3166at 3772.982 kb on - strand, within Echvi_3166at 3773.002 kb on + strand, within Echvi_3166at 3773.002 kb on + strand, within Echvi_3166at 3773.118 kb on + strand, within Echvi_3166

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,769,789 - Echvi_3163 0.23 +0.0
3,769,820 - Echvi_3163 0.26 +0.0
3,769,909 - Echvi_3163 0.37 -0.5
3,769,927 - Echvi_3163 0.39 +1.0
3,769,965 - Echvi_3163 0.43 +0.1
3,769,990 + Echvi_3163 0.46 -3.1
3,769,990 + Echvi_3163 0.46 -2.2
3,769,991 - Echvi_3163 0.47 -0.6
3,769,992 + Echvi_3163 0.47 -1.2
3,769,992 + Echvi_3163 0.47 -1.5
3,769,993 - Echvi_3163 0.47 +0.2
3,770,008 + Echvi_3163 0.49 -0.4
3,770,035 - Echvi_3163 0.52 -0.0
3,770,051 + Echvi_3163 0.54 -0.7
3,770,052 - Echvi_3163 0.54 -0.4
3,770,052 - Echvi_3163 0.54 -0.5
3,770,052 - Echvi_3163 0.54 -0.7
3,770,053 + Echvi_3163 0.54 -0.1
3,770,054 - Echvi_3163 0.54 +0.1
3,770,054 - Echvi_3163 0.54 -0.2
3,770,054 - Echvi_3163 0.54 +0.5
3,770,054 - Echvi_3163 0.54 -0.0
3,770,054 - Echvi_3163 0.54 -1.1
3,770,054 - Echvi_3163 0.54 -0.0
3,770,055 + Echvi_3163 0.54 +0.1
3,770,056 - Echvi_3163 0.54 +0.3
3,770,138 - Echvi_3163 0.64 -0.5
3,770,138 - Echvi_3163 0.64 -1.6
3,770,138 - Echvi_3163 0.64 -0.0
3,770,138 - Echvi_3163 0.64 -0.2
3,770,196 + Echvi_3163 0.71 +0.5
3,770,243 + Echvi_3163 0.76 -1.8
3,770,244 - Echvi_3163 0.76 -0.3
3,770,244 - Echvi_3163 0.76 -0.2
3,770,244 - Echvi_3163 0.76 +0.1
3,770,244 - Echvi_3163 0.76 -0.0
3,770,244 - Echvi_3163 0.76 +0.8
3,770,247 + Echvi_3163 0.77 -0.1
3,770,247 + Echvi_3163 0.77 -1.3
3,770,259 - Echvi_3163 0.78 +0.4
3,770,259 - Echvi_3163 0.78 +0.0
3,770,277 - Echvi_3163 0.80 -0.1
3,770,335 - Echvi_3163 0.87 -0.1
3,770,433 - -0.7
3,770,577 + Echvi_3164 0.37 -1.4
3,770,584 - Echvi_3164 0.40 -0.4
3,770,586 + Echvi_3164 0.40 -0.5
3,770,598 + Echvi_3164 0.45 -0.3
3,770,598 + Echvi_3164 0.45 -0.7
3,770,598 + Echvi_3164 0.45 -1.1
3,770,599 - Echvi_3164 0.45 -0.0
3,770,599 - Echvi_3164 0.45 +0.6
3,770,605 - Echvi_3164 0.48 -1.1
3,770,620 + Echvi_3164 0.54 +0.6
3,770,636 + Echvi_3164 0.60 +0.4
3,770,638 + Echvi_3164 0.61 +1.5
3,770,639 - Echvi_3164 0.61 +0.4
3,770,836 + -0.4
3,770,837 - -0.5
3,770,845 - +0.2
3,770,972 + Echvi_3165 0.16 -1.8
3,770,973 - Echvi_3165 0.16 +0.9
3,771,062 - Echvi_3165 0.22 +0.4
3,771,173 + Echvi_3165 0.31 +1.3
3,771,174 - Echvi_3165 0.31 +0.2
3,771,174 - Echvi_3165 0.31 -0.9
3,771,266 + Echvi_3165 0.37 +2.2
3,771,266 + Echvi_3165 0.37 -1.9
3,771,267 - Echvi_3165 0.37 +0.4
3,771,267 - Echvi_3165 0.37 +0.3
3,771,267 - Echvi_3165 0.37 +0.7
3,771,280 + Echvi_3165 0.38 -0.7
3,771,280 + Echvi_3165 0.38 -0.9
3,771,281 - Echvi_3165 0.38 -0.1
3,771,281 - Echvi_3165 0.38 +0.1
3,771,282 + Echvi_3165 0.38 +1.3
3,771,283 - Echvi_3165 0.38 +0.6
3,771,283 - Echvi_3165 0.38 +2.4
3,771,334 - Echvi_3165 0.42 +0.8
3,771,334 - Echvi_3165 0.42 -2.5
3,771,337 - Echvi_3165 0.42 +2.7
3,771,372 + Echvi_3165 0.45 +0.3
3,771,373 - Echvi_3165 0.45 +0.9
3,771,375 + Echvi_3165 0.45 +0.5
3,771,375 + Echvi_3165 0.45 +0.2
3,771,376 - Echvi_3165 0.45 -0.7
3,771,376 - Echvi_3165 0.45 +1.0
3,771,379 + Echvi_3165 0.45 +0.0
3,771,392 + Echvi_3165 0.46 +0.4
3,771,421 - Echvi_3165 0.49 +1.1
3,771,577 - Echvi_3165 0.60 -0.3
3,771,619 + Echvi_3165 0.63 -0.8
3,771,619 + Echvi_3165 0.63 -1.0
3,771,619 + Echvi_3165 0.63 +2.1
3,771,620 - Echvi_3165 0.63 -1.6
3,771,620 - Echvi_3165 0.63 +0.7
3,771,620 - Echvi_3165 0.63 +1.6
3,771,679 + Echvi_3165 0.67 +0.5
3,771,680 - Echvi_3165 0.67 +0.3
3,771,695 + Echvi_3165 0.68 -0.6
3,771,695 + Echvi_3165 0.68 +0.8
3,771,714 + Echvi_3165 0.70 +1.0
3,771,715 - Echvi_3165 0.70 +0.5
3,771,781 + Echvi_3165 0.75 -1.1
3,771,815 - Echvi_3165 0.77 -0.3
3,771,831 + Echvi_3165 0.78 -1.4
3,771,837 - Echvi_3165 0.79 -1.5
3,771,992 - -0.7
3,772,023 + +0.6
3,772,077 - -0.0
3,772,105 - +0.4
3,772,105 - +0.5
3,772,105 - +0.5
3,772,105 - +0.0
3,772,106 + -2.6
3,772,107 - +0.2
3,772,123 - -0.9
3,772,173 + +0.7
3,772,196 + +0.5
3,772,196 + +0.7
3,772,215 + +0.6
3,772,215 + +0.6
3,772,215 + -0.4
3,772,220 + -0.4
3,772,220 + -0.8
3,772,220 + +0.1
3,772,220 + -2.1
3,772,220 + +0.4
3,772,278 + -0.4
3,772,297 + +0.1
3,772,319 - Echvi_3166 0.11 -0.3
3,772,319 - Echvi_3166 0.11 -0.2
3,772,337 - Echvi_3166 0.12 +0.1
3,772,405 + Echvi_3166 0.17 +0.0
3,772,412 + Echvi_3166 0.17 -0.5
3,772,413 - Echvi_3166 0.17 +0.3
3,772,413 - Echvi_3166 0.17 +0.0
3,772,433 - Echvi_3166 0.19 +1.6
3,772,435 - Echvi_3166 0.19 +0.6
3,772,484 + Echvi_3166 0.22 +2.2
3,772,487 - Echvi_3166 0.22 -0.1
3,772,487 - Echvi_3166 0.22 +0.2
3,772,487 - Echvi_3166 0.22 -0.4
3,772,494 - Echvi_3166 0.23 -0.3
3,772,494 - Echvi_3166 0.23 +0.5
3,772,555 + Echvi_3166 0.27 -0.7
3,772,556 - Echvi_3166 0.27 +0.6
3,772,556 - Echvi_3166 0.27 -0.2
3,772,596 + Echvi_3166 0.30 +1.2
3,772,596 + Echvi_3166 0.30 -0.2
3,772,597 - Echvi_3166 0.30 -0.8
3,772,606 + Echvi_3166 0.30 -0.5
3,772,675 + Echvi_3166 0.35 -1.6
3,772,675 + Echvi_3166 0.35 -0.3
3,772,675 + Echvi_3166 0.35 +0.3
3,772,676 - Echvi_3166 0.35 +1.7
3,772,676 - Echvi_3166 0.35 +0.1
3,772,696 + Echvi_3166 0.36 +0.0
3,772,696 + Echvi_3166 0.36 -0.3
3,772,741 + Echvi_3166 0.39 -0.4
3,772,742 - Echvi_3166 0.39 -0.0
3,772,742 - Echvi_3166 0.39 +0.1
3,772,742 - Echvi_3166 0.39 -1.3
3,772,742 - Echvi_3166 0.39 +0.2
3,772,742 - Echvi_3166 0.39 +0.0
3,772,742 - Echvi_3166 0.39 +0.3
3,772,742 - Echvi_3166 0.39 +0.7
3,772,745 - Echvi_3166 0.40 -0.0
3,772,745 - Echvi_3166 0.40 +0.6
3,772,795 + Echvi_3166 0.43 +0.8
3,772,796 - Echvi_3166 0.43 -0.6
3,772,796 - Echvi_3166 0.43 +0.2
3,772,807 - Echvi_3166 0.44 -0.8
3,772,849 - Echvi_3166 0.46 +0.6
3,772,849 - Echvi_3166 0.46 -1.6
3,772,896 + Echvi_3166 0.50 -0.1
3,772,974 + Echvi_3166 0.55 -0.9
3,772,975 - Echvi_3166 0.55 -0.3
3,772,982 - Echvi_3166 0.55 -0.5
3,773,002 + Echvi_3166 0.57 +1.2
3,773,002 + Echvi_3166 0.57 +0.6
3,773,118 + Echvi_3166 0.64 -1.2

Or see this region's nucleotide sequence