Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2703

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2702 and Echvi_2703 are separated by 2 nucleotidesEchvi_2703 and Echvi_2704 are separated by 61 nucleotidesEchvi_2704 and Echvi_2705 overlap by 4 nucleotides Echvi_2702: Echvi_2702 - Putative GTPases (G3E family), at 3,216,416 to 3,217,612 _2702 Echvi_2703: Echvi_2703 - MerC mercury resistance protein., at 3,217,615 to 3,218,004 _2703 Echvi_2704: Echvi_2704 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,218,066 to 3,218,752 _2704 Echvi_2705: Echvi_2705 - ABC-type transport system, involved in lipoprotein release, permease component, at 3,218,749 to 3,220,035 _2705 Position (kb) 3217 3218 3219Strain fitness (log2 ratio) -2 -1 0 1 2at 3216.841 kb on - strand, within Echvi_2702at 3216.859 kb on + strand, within Echvi_2702at 3216.860 kb on - strand, within Echvi_2702at 3216.860 kb on - strand, within Echvi_2702at 3216.953 kb on - strand, within Echvi_2702at 3217.165 kb on + strand, within Echvi_2702at 3217.165 kb on + strand, within Echvi_2702at 3217.165 kb on + strand, within Echvi_2702at 3217.166 kb on - strand, within Echvi_2702at 3217.211 kb on - strand, within Echvi_2702at 3217.241 kb on + strand, within Echvi_2702at 3217.242 kb on - strand, within Echvi_2702at 3217.303 kb on + strand, within Echvi_2702at 3217.433 kb on + strand, within Echvi_2702at 3217.433 kb on + strand, within Echvi_2702at 3217.616 kb on + strandat 3217.617 kb on - strandat 3217.691 kb on - strand, within Echvi_2703at 3217.691 kb on - strand, within Echvi_2703at 3217.691 kb on - strand, within Echvi_2703at 3217.693 kb on - strand, within Echvi_2703at 3217.735 kb on + strand, within Echvi_2703at 3217.765 kb on + strand, within Echvi_2703at 3217.766 kb on - strand, within Echvi_2703at 3217.800 kb on + strand, within Echvi_2703at 3217.800 kb on + strand, within Echvi_2703at 3217.800 kb on + strand, within Echvi_2703at 3217.801 kb on - strand, within Echvi_2703at 3217.856 kb on + strand, within Echvi_2703at 3217.857 kb on - strand, within Echvi_2703at 3217.857 kb on - strand, within Echvi_2703at 3217.914 kb on + strand, within Echvi_2703at 3217.991 kb on - strandat 3218.040 kb on - strandat 3218.047 kb on - strandat 3218.082 kb on + strandat 3218.085 kb on + strandat 3218.112 kb on + strandat 3218.112 kb on + strandat 3218.112 kb on + strandat 3218.116 kb on + strandat 3218.116 kb on + strandat 3218.121 kb on + strandat 3218.121 kb on + strandat 3218.124 kb on + strandat 3218.125 kb on - strandat 3218.126 kb on + strandat 3218.126 kb on + strandat 3218.126 kb on + strandat 3218.126 kb on + strandat 3218.127 kb on - strandat 3218.128 kb on + strandat 3218.159 kb on + strand, within Echvi_2704at 3218.159 kb on + strand, within Echvi_2704at 3218.215 kb on - strand, within Echvi_2704at 3218.215 kb on - strand, within Echvi_2704at 3218.253 kb on + strand, within Echvi_2704at 3218.254 kb on - strand, within Echvi_2704at 3218.254 kb on - strand, within Echvi_2704at 3218.256 kb on + strand, within Echvi_2704at 3218.256 kb on + strand, within Echvi_2704at 3218.257 kb on - strand, within Echvi_2704at 3218.298 kb on + strand, within Echvi_2704at 3218.298 kb on + strand, within Echvi_2704at 3218.298 kb on + strand, within Echvi_2704at 3218.298 kb on + strand, within Echvi_2704at 3218.299 kb on - strand, within Echvi_2704at 3218.299 kb on - strand, within Echvi_2704at 3218.299 kb on - strand, within Echvi_2704at 3218.330 kb on - strand, within Echvi_2704at 3218.330 kb on - strand, within Echvi_2704at 3218.330 kb on - strand, within Echvi_2704at 3218.330 kb on - strand, within Echvi_2704at 3218.330 kb on - strand, within Echvi_2704at 3218.330 kb on - strand, within Echvi_2704at 3218.365 kb on + strand, within Echvi_2704at 3218.368 kb on - strand, within Echvi_2704at 3218.368 kb on - strand, within Echvi_2704at 3218.414 kb on - strand, within Echvi_2704at 3218.434 kb on - strand, within Echvi_2704at 3218.500 kb on - strand, within Echvi_2704at 3218.611 kb on + strand, within Echvi_2704at 3218.612 kb on - strand, within Echvi_2704at 3218.612 kb on - strand, within Echvi_2704at 3218.771 kb on + strandat 3218.772 kb on - strandat 3218.878 kb on - strand, within Echvi_2705at 3218.878 kb on - strand, within Echvi_2705at 3218.895 kb on + strand, within Echvi_2705at 3218.896 kb on - strand, within Echvi_2705at 3218.896 kb on - strand, within Echvi_2705at 3218.939 kb on + strand, within Echvi_2705at 3218.940 kb on - strand, within Echvi_2705at 3218.967 kb on + strand, within Echvi_2705at 3218.967 kb on + strand, within Echvi_2705at 3218.969 kb on + strand, within Echvi_2705at 3218.969 kb on + strand, within Echvi_2705

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,216,841 - Echvi_2702 0.36 +1.1
3,216,859 + Echvi_2702 0.37 -0.8
3,216,860 - Echvi_2702 0.37 -0.7
3,216,860 - Echvi_2702 0.37 +1.0
3,216,953 - Echvi_2702 0.45 +1.2
3,217,165 + Echvi_2702 0.63 -1.0
3,217,165 + Echvi_2702 0.63 +0.2
3,217,165 + Echvi_2702 0.63 -0.3
3,217,166 - Echvi_2702 0.63 -0.3
3,217,211 - Echvi_2702 0.66 -0.9
3,217,241 + Echvi_2702 0.69 +0.4
3,217,242 - Echvi_2702 0.69 -0.2
3,217,303 + Echvi_2702 0.74 -0.4
3,217,433 + Echvi_2702 0.85 +0.5
3,217,433 + Echvi_2702 0.85 +0.4
3,217,616 + +0.1
3,217,617 - -0.4
3,217,691 - Echvi_2703 0.19 -0.1
3,217,691 - Echvi_2703 0.19 +1.0
3,217,691 - Echvi_2703 0.19 -0.5
3,217,693 - Echvi_2703 0.20 -0.0
3,217,735 + Echvi_2703 0.31 -0.5
3,217,765 + Echvi_2703 0.38 -1.0
3,217,766 - Echvi_2703 0.39 -0.2
3,217,800 + Echvi_2703 0.47 +1.2
3,217,800 + Echvi_2703 0.47 +1.1
3,217,800 + Echvi_2703 0.47 +0.5
3,217,801 - Echvi_2703 0.48 +0.1
3,217,856 + Echvi_2703 0.62 +0.9
3,217,857 - Echvi_2703 0.62 +0.9
3,217,857 - Echvi_2703 0.62 -1.1
3,217,914 + Echvi_2703 0.77 +0.6
3,217,991 - +0.3
3,218,040 - -0.3
3,218,047 - +0.4
3,218,082 + -1.7
3,218,085 + -1.8
3,218,112 + -0.1
3,218,112 + +0.1
3,218,112 + +0.4
3,218,116 + -1.6
3,218,116 + -0.6
3,218,121 + +0.1
3,218,121 + +0.5
3,218,124 + +1.4
3,218,125 - -1.0
3,218,126 + -0.2
3,218,126 + -0.7
3,218,126 + -0.2
3,218,126 + +0.8
3,218,127 - -0.5
3,218,128 + +0.4
3,218,159 + Echvi_2704 0.14 -0.7
3,218,159 + Echvi_2704 0.14 +0.4
3,218,215 - Echvi_2704 0.22 -0.8
3,218,215 - Echvi_2704 0.22 -0.6
3,218,253 + Echvi_2704 0.27 -1.8
3,218,254 - Echvi_2704 0.27 +0.3
3,218,254 - Echvi_2704 0.27 +0.5
3,218,256 + Echvi_2704 0.28 -1.0
3,218,256 + Echvi_2704 0.28 -1.1
3,218,257 - Echvi_2704 0.28 +0.1
3,218,298 + Echvi_2704 0.34 -0.3
3,218,298 + Echvi_2704 0.34 -0.6
3,218,298 + Echvi_2704 0.34 -0.4
3,218,298 + Echvi_2704 0.34 -0.0
3,218,299 - Echvi_2704 0.34 -0.2
3,218,299 - Echvi_2704 0.34 -0.3
3,218,299 - Echvi_2704 0.34 -0.1
3,218,330 - Echvi_2704 0.38 +0.4
3,218,330 - Echvi_2704 0.38 -0.6
3,218,330 - Echvi_2704 0.38 +0.0
3,218,330 - Echvi_2704 0.38 +1.4
3,218,330 - Echvi_2704 0.38 +0.1
3,218,330 - Echvi_2704 0.38 -0.1
3,218,365 + Echvi_2704 0.44 -0.3
3,218,368 - Echvi_2704 0.44 +0.5
3,218,368 - Echvi_2704 0.44 +1.9
3,218,414 - Echvi_2704 0.51 -0.9
3,218,434 - Echvi_2704 0.54 -0.1
3,218,500 - Echvi_2704 0.63 -0.5
3,218,611 + Echvi_2704 0.79 +1.3
3,218,612 - Echvi_2704 0.79 -0.5
3,218,612 - Echvi_2704 0.79 +0.4
3,218,771 + -0.8
3,218,772 - -0.8
3,218,878 - Echvi_2705 0.10 +0.0
3,218,878 - Echvi_2705 0.10 -0.5
3,218,895 + Echvi_2705 0.11 +1.0
3,218,896 - Echvi_2705 0.11 +1.4
3,218,896 - Echvi_2705 0.11 +1.0
3,218,939 + Echvi_2705 0.15 -2.2
3,218,940 - Echvi_2705 0.15 -1.2
3,218,967 + Echvi_2705 0.17 +0.4
3,218,967 + Echvi_2705 0.17 -0.7
3,218,969 + Echvi_2705 0.17 -1.0
3,218,969 + Echvi_2705 0.17 +1.6

Or see this region's nucleotide sequence