Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2644

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2643 and Echvi_2644 are separated by 169 nucleotidesEchvi_2644 and Echvi_2645 are separated by 98 nucleotidesEchvi_2645 and Echvi_2646 overlap by 11 nucleotides Echvi_2643: Echvi_2643 - hypothetical protein, at 3,131,851 to 3,133,005 _2643 Echvi_2644: Echvi_2644 - hypothetical protein, at 3,133,175 to 3,133,744 _2644 Echvi_2645: Echvi_2645 - hypothetical protein, at 3,133,843 to 3,134,610 _2645 Echvi_2646: Echvi_2646 - hypothetical protein, at 3,134,600 to 3,134,938 _2646 Position (kb) 3133 3134Strain fitness (log2 ratio) -2 -1 0 1 2at 3132.208 kb on - strand, within Echvi_2643at 3132.218 kb on - strand, within Echvi_2643at 3132.240 kb on + strand, within Echvi_2643at 3132.241 kb on - strand, within Echvi_2643at 3132.241 kb on - strand, within Echvi_2643at 3132.241 kb on - strand, within Echvi_2643at 3132.243 kb on + strand, within Echvi_2643at 3132.243 kb on + strand, within Echvi_2643at 3132.244 kb on - strand, within Echvi_2643at 3132.249 kb on + strand, within Echvi_2643at 3132.270 kb on + strand, within Echvi_2643at 3132.271 kb on - strand, within Echvi_2643at 3132.279 kb on + strand, within Echvi_2643at 3132.280 kb on - strand, within Echvi_2643at 3132.280 kb on - strand, within Echvi_2643at 3132.351 kb on + strand, within Echvi_2643at 3132.382 kb on + strand, within Echvi_2643at 3132.434 kb on - strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.439 kb on - strand, within Echvi_2643at 3132.439 kb on - strand, within Echvi_2643at 3132.439 kb on - strand, within Echvi_2643at 3132.446 kb on + strand, within Echvi_2643at 3132.461 kb on + strand, within Echvi_2643at 3132.461 kb on + strand, within Echvi_2643at 3132.461 kb on + strand, within Echvi_2643at 3132.467 kb on - strand, within Echvi_2643at 3132.498 kb on + strand, within Echvi_2643at 3132.499 kb on - strand, within Echvi_2643at 3132.499 kb on - strand, within Echvi_2643at 3132.552 kb on + strand, within Echvi_2643at 3132.552 kb on + strand, within Echvi_2643at 3132.552 kb on + strand, within Echvi_2643at 3132.552 kb on + strand, within Echvi_2643at 3132.553 kb on - strand, within Echvi_2643at 3132.554 kb on + strand, within Echvi_2643at 3132.555 kb on - strand, within Echvi_2643at 3132.564 kb on + strand, within Echvi_2643at 3132.564 kb on + strand, within Echvi_2643at 3132.564 kb on + strand, within Echvi_2643at 3132.565 kb on - strand, within Echvi_2643at 3132.565 kb on - strand, within Echvi_2643at 3132.592 kb on + strand, within Echvi_2643at 3132.630 kb on + strand, within Echvi_2643at 3132.639 kb on + strand, within Echvi_2643at 3132.669 kb on + strand, within Echvi_2643at 3132.677 kb on - strand, within Echvi_2643at 3132.680 kb on - strand, within Echvi_2643at 3132.701 kb on + strand, within Echvi_2643at 3132.702 kb on - strand, within Echvi_2643at 3132.739 kb on - strand, within Echvi_2643at 3132.751 kb on + strand, within Echvi_2643at 3132.752 kb on - strand, within Echvi_2643at 3132.815 kb on - strand, within Echvi_2643at 3132.829 kb on + strand, within Echvi_2643at 3132.830 kb on - strand, within Echvi_2643at 3132.833 kb on - strand, within Echvi_2643at 3132.838 kb on - strand, within Echvi_2643at 3132.838 kb on - strand, within Echvi_2643at 3132.906 kb on + strandat 3132.946 kb on + strandat 3132.973 kb on - strandat 3133.109 kb on + strandat 3133.129 kb on + strandat 3133.130 kb on - strandat 3133.141 kb on + strandat 3133.156 kb on - strandat 3133.169 kb on - strandat 3133.217 kb on - strandat 3133.220 kb on + strandat 3133.256 kb on - strand, within Echvi_2644at 3133.258 kb on - strand, within Echvi_2644at 3133.304 kb on - strand, within Echvi_2644at 3133.472 kb on - strand, within Echvi_2644at 3133.484 kb on - strand, within Echvi_2644at 3133.572 kb on - strand, within Echvi_2644at 3133.572 kb on - strand, within Echvi_2644at 3133.574 kb on + strand, within Echvi_2644at 3133.575 kb on - strand, within Echvi_2644at 3133.575 kb on - strand, within Echvi_2644at 3133.608 kb on + strand, within Echvi_2644at 3133.621 kb on - strand, within Echvi_2644at 3133.628 kb on - strand, within Echvi_2644at 3133.661 kb on + strand, within Echvi_2644at 3133.705 kb on + strandat 3133.708 kb on - strandat 3133.708 kb on - strandat 3133.746 kb on - strandat 3133.816 kb on - strandat 3133.850 kb on - strandat 3134.626 kb on + strandat 3134.627 kb on - strandat 3134.645 kb on + strand, within Echvi_2646at 3134.645 kb on + strand, within Echvi_2646at 3134.663 kb on - strand, within Echvi_2646at 3134.672 kb on + strand, within Echvi_2646at 3134.672 kb on + strand, within Echvi_2646at 3134.672 kb on + strand, within Echvi_2646at 3134.681 kb on + strand, within Echvi_2646at 3134.681 kb on + strand, within Echvi_2646at 3134.682 kb on - strand, within Echvi_2646at 3134.684 kb on + strand, within Echvi_2646at 3134.685 kb on - strand, within Echvi_2646at 3134.685 kb on - strand, within Echvi_2646at 3134.687 kb on + strand, within Echvi_2646at 3134.699 kb on - strand, within Echvi_2646

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,132,208 - Echvi_2643 0.31 -1.1
3,132,218 - Echvi_2643 0.32 -1.4
3,132,240 + Echvi_2643 0.34 -0.8
3,132,241 - Echvi_2643 0.34 -1.3
3,132,241 - Echvi_2643 0.34 +0.0
3,132,241 - Echvi_2643 0.34 -0.6
3,132,243 + Echvi_2643 0.34 +0.1
3,132,243 + Echvi_2643 0.34 -0.7
3,132,244 - Echvi_2643 0.34 -2.5
3,132,249 + Echvi_2643 0.34 -0.1
3,132,270 + Echvi_2643 0.36 -0.2
3,132,271 - Echvi_2643 0.36 +0.4
3,132,279 + Echvi_2643 0.37 +0.4
3,132,280 - Echvi_2643 0.37 -0.0
3,132,280 - Echvi_2643 0.37 +0.2
3,132,351 + Echvi_2643 0.43 -0.3
3,132,382 + Echvi_2643 0.46 -0.5
3,132,434 - Echvi_2643 0.50 +0.1
3,132,438 + Echvi_2643 0.51 +0.6
3,132,438 + Echvi_2643 0.51 +0.6
3,132,438 + Echvi_2643 0.51 +0.3
3,132,438 + Echvi_2643 0.51 -0.3
3,132,438 + Echvi_2643 0.51 +0.1
3,132,438 + Echvi_2643 0.51 -0.0
3,132,439 - Echvi_2643 0.51 -1.0
3,132,439 - Echvi_2643 0.51 -1.1
3,132,439 - Echvi_2643 0.51 -0.4
3,132,446 + Echvi_2643 0.52 +0.3
3,132,461 + Echvi_2643 0.53 -0.4
3,132,461 + Echvi_2643 0.53 -0.4
3,132,461 + Echvi_2643 0.53 +0.2
3,132,467 - Echvi_2643 0.53 -0.8
3,132,498 + Echvi_2643 0.56 -0.1
3,132,499 - Echvi_2643 0.56 +0.3
3,132,499 - Echvi_2643 0.56 -1.9
3,132,552 + Echvi_2643 0.61 +0.6
3,132,552 + Echvi_2643 0.61 +0.2
3,132,552 + Echvi_2643 0.61 -1.1
3,132,552 + Echvi_2643 0.61 -0.5
3,132,553 - Echvi_2643 0.61 +0.4
3,132,554 + Echvi_2643 0.61 +0.5
3,132,555 - Echvi_2643 0.61 -0.4
3,132,564 + Echvi_2643 0.62 +0.4
3,132,564 + Echvi_2643 0.62 -0.8
3,132,564 + Echvi_2643 0.62 -0.1
3,132,565 - Echvi_2643 0.62 -0.3
3,132,565 - Echvi_2643 0.62 -0.8
3,132,592 + Echvi_2643 0.64 -1.0
3,132,630 + Echvi_2643 0.67 -0.7
3,132,639 + Echvi_2643 0.68 -0.5
3,132,669 + Echvi_2643 0.71 -0.6
3,132,677 - Echvi_2643 0.72 -1.2
3,132,680 - Echvi_2643 0.72 +0.1
3,132,701 + Echvi_2643 0.74 +0.2
3,132,702 - Echvi_2643 0.74 +0.5
3,132,739 - Echvi_2643 0.77 +0.4
3,132,751 + Echvi_2643 0.78 -1.3
3,132,752 - Echvi_2643 0.78 -0.4
3,132,815 - Echvi_2643 0.83 +0.6
3,132,829 + Echvi_2643 0.85 -0.7
3,132,830 - Echvi_2643 0.85 -0.0
3,132,833 - Echvi_2643 0.85 +0.5
3,132,838 - Echvi_2643 0.85 +0.6
3,132,838 - Echvi_2643 0.85 -0.4
3,132,906 + -0.8
3,132,946 + +0.3
3,132,973 - -1.1
3,133,109 + -0.4
3,133,129 + +0.1
3,133,130 - +0.1
3,133,141 + +0.2
3,133,156 - +0.5
3,133,169 - -0.0
3,133,217 - +0.2
3,133,220 + -1.1
3,133,256 - Echvi_2644 0.14 -0.3
3,133,258 - Echvi_2644 0.15 +0.6
3,133,304 - Echvi_2644 0.23 +0.8
3,133,472 - Echvi_2644 0.52 -0.2
3,133,484 - Echvi_2644 0.54 +0.2
3,133,572 - Echvi_2644 0.70 +1.6
3,133,572 - Echvi_2644 0.70 +0.7
3,133,574 + Echvi_2644 0.70 -0.4
3,133,575 - Echvi_2644 0.70 -0.7
3,133,575 - Echvi_2644 0.70 +0.5
3,133,608 + Echvi_2644 0.76 +1.4
3,133,621 - Echvi_2644 0.78 -0.2
3,133,628 - Echvi_2644 0.79 -0.3
3,133,661 + Echvi_2644 0.85 +0.5
3,133,705 + -1.2
3,133,708 - -0.4
3,133,708 - +0.1
3,133,746 - +1.2
3,133,816 - -0.2
3,133,850 - +0.3
3,134,626 + -1.0
3,134,627 - +0.3
3,134,645 + Echvi_2646 0.13 -1.5
3,134,645 + Echvi_2646 0.13 -0.2
3,134,663 - Echvi_2646 0.19 -0.0
3,134,672 + Echvi_2646 0.21 +1.7
3,134,672 + Echvi_2646 0.21 +2.4
3,134,672 + Echvi_2646 0.21 -0.5
3,134,681 + Echvi_2646 0.24 -0.6
3,134,681 + Echvi_2646 0.24 -0.2
3,134,682 - Echvi_2646 0.24 +0.1
3,134,684 + Echvi_2646 0.25 -0.6
3,134,685 - Echvi_2646 0.25 -0.3
3,134,685 - Echvi_2646 0.25 +0.2
3,134,687 + Echvi_2646 0.26 -1.1
3,134,699 - Echvi_2646 0.29 -0.9

Or see this region's nucleotide sequence