Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2251

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2248 and Echvi_2249 are separated by 234 nucleotidesEchvi_2249 and Echvi_2250 overlap by 4 nucleotidesEchvi_2250 and Echvi_2251 are separated by 301 nucleotidesEchvi_2251 and Echvi_2252 are separated by 119 nucleotides Echvi_2248: Echvi_2248 - Peroxiredoxin, at 2,668,291 to 2,668,782 _2248 Echvi_2249: Echvi_2249 - hypothetical protein, at 2,669,017 to 2,669,253 _2249 Echvi_2250: Echvi_2250 - hypothetical protein, at 2,669,250 to 2,669,450 _2250 Echvi_2251: Echvi_2251 - hypothetical protein, at 2,669,752 to 2,669,928 _2251 Echvi_2252: Echvi_2252 - Mg-chelatase subunit ChlD, at 2,670,048 to 2,671,094 _2252 Position (kb) 2669 2670Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2668.769 kb on + strandat 2668.770 kb on - strandat 2668.770 kb on - strandat 2668.770 kb on - strandat 2668.785 kb on - strandat 2668.790 kb on + strandat 2668.795 kb on + strandat 2668.880 kb on + strandat 2668.881 kb on - strandat 2668.881 kb on - strandat 2668.884 kb on - strandat 2668.884 kb on - strandat 2668.915 kb on + strandat 2668.916 kb on - strandat 2668.916 kb on - strandat 2668.995 kb on + strandat 2668.996 kb on - strandat 2669.001 kb on + strandat 2669.097 kb on + strand, within Echvi_2249at 2669.140 kb on - strand, within Echvi_2249at 2669.249 kb on + strandat 2669.249 kb on + strandat 2669.250 kb on - strandat 2669.250 kb on - strandat 2669.295 kb on - strand, within Echvi_2250at 2669.343 kb on + strand, within Echvi_2250at 2669.343 kb on + strand, within Echvi_2250at 2669.343 kb on + strand, within Echvi_2250at 2669.343 kb on + strand, within Echvi_2250at 2669.344 kb on - strand, within Echvi_2250at 2669.344 kb on - strand, within Echvi_2250at 2669.344 kb on - strand, within Echvi_2250at 2669.344 kb on - strand, within Echvi_2250at 2669.344 kb on - strand, within Echvi_2250at 2669.344 kb on - strand, within Echvi_2250at 2669.344 kb on - strand, within Echvi_2250at 2669.344 kb on - strand, within Echvi_2250at 2669.345 kb on + strand, within Echvi_2250at 2669.345 kb on + strand, within Echvi_2250at 2669.345 kb on + strand, within Echvi_2250at 2669.346 kb on - strand, within Echvi_2250at 2669.346 kb on - strand, within Echvi_2250at 2669.357 kb on - strand, within Echvi_2250at 2669.386 kb on + strand, within Echvi_2250at 2669.386 kb on + strand, within Echvi_2250at 2669.424 kb on - strand, within Echvi_2250at 2669.424 kb on - strand, within Echvi_2250at 2669.424 kb on - strand, within Echvi_2250at 2669.456 kb on - strandat 2669.535 kb on + strandat 2669.536 kb on - strandat 2669.572 kb on + strandat 2669.573 kb on - strandat 2669.573 kb on - strandat 2669.575 kb on + strandat 2669.575 kb on + strandat 2669.575 kb on + strandat 2669.576 kb on - strandat 2669.576 kb on - strandat 2669.576 kb on - strandat 2669.576 kb on - strandat 2669.631 kb on - strandat 2669.678 kb on + strandat 2669.678 kb on + strandat 2669.684 kb on + strandat 2669.684 kb on + strandat 2669.685 kb on - strandat 2669.685 kb on - strandat 2669.693 kb on + strandat 2669.698 kb on - strandat 2669.709 kb on + strandat 2669.710 kb on - strandat 2669.743 kb on + strandat 2669.776 kb on - strand, within Echvi_2251at 2669.783 kb on + strand, within Echvi_2251at 2669.792 kb on + strand, within Echvi_2251at 2669.795 kb on + strand, within Echvi_2251at 2669.795 kb on + strand, within Echvi_2251at 2669.796 kb on - strand, within Echvi_2251at 2669.796 kb on - strand, within Echvi_2251at 2669.812 kb on + strand, within Echvi_2251at 2669.812 kb on + strand, within Echvi_2251at 2669.812 kb on + strand, within Echvi_2251at 2669.812 kb on + strand, within Echvi_2251at 2669.812 kb on + strand, within Echvi_2251at 2669.812 kb on + strand, within Echvi_2251at 2669.813 kb on - strand, within Echvi_2251at 2669.813 kb on - strand, within Echvi_2251at 2669.813 kb on - strand, within Echvi_2251at 2669.813 kb on - strand, within Echvi_2251at 2669.815 kb on - strandat 2669.815 kb on - strand, within Echvi_2251at 2669.881 kb on - strand, within Echvi_2251at 2669.881 kb on - strand, within Echvi_2251at 2669.893 kb on - strand, within Echvi_2251at 2669.893 kb on - strand, within Echvi_2251at 2669.926 kb on + strandat 2669.926 kb on + strandat 2669.926 kb on + strandat 2670.014 kb on - strandat 2670.023 kb on + strandat 2670.024 kb on - strandat 2670.098 kb on + strandat 2670.128 kb on - strandat 2670.157 kb on + strand, within Echvi_2252at 2670.374 kb on - strand, within Echvi_2252at 2670.513 kb on + strand, within Echvi_2252at 2670.573 kb on - strand, within Echvi_2252at 2670.639 kb on + strand, within Echvi_2252at 2670.639 kb on + strand, within Echvi_2252at 2670.639 kb on + strand, within Echvi_2252at 2670.672 kb on + strand, within Echvi_2252at 2670.673 kb on - strand, within Echvi_2252at 2670.711 kb on - strand, within Echvi_2252at 2670.773 kb on + strand, within Echvi_2252at 2670.774 kb on - strand, within Echvi_2252at 2670.880 kb on - strand, within Echvi_2252at 2670.896 kb on + strand, within Echvi_2252at 2670.897 kb on - strand, within Echvi_2252

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,668,769 + +0.1
2,668,770 - -2.6
2,668,770 - +0.4
2,668,770 - -1.7
2,668,785 - +1.0
2,668,790 + -0.2
2,668,795 + +1.1
2,668,880 + -0.2
2,668,881 - +0.3
2,668,881 - +0.7
2,668,884 - -0.1
2,668,884 - +0.2
2,668,915 + -0.0
2,668,916 - -3.2
2,668,916 - +0.4
2,668,995 + +1.6
2,668,996 - +2.4
2,669,001 + +0.3
2,669,097 + Echvi_2249 0.34 +0.0
2,669,140 - Echvi_2249 0.52 +1.1
2,669,249 + +0.2
2,669,249 + -0.6
2,669,250 - -0.3
2,669,250 - -1.1
2,669,295 - Echvi_2250 0.22 +0.2
2,669,343 + Echvi_2250 0.46 +0.3
2,669,343 + Echvi_2250 0.46 -0.1
2,669,343 + Echvi_2250 0.46 +1.2
2,669,343 + Echvi_2250 0.46 +0.1
2,669,344 - Echvi_2250 0.47 -0.7
2,669,344 - Echvi_2250 0.47 +0.1
2,669,344 - Echvi_2250 0.47 +0.8
2,669,344 - Echvi_2250 0.47 -1.1
2,669,344 - Echvi_2250 0.47 +0.9
2,669,344 - Echvi_2250 0.47 -2.0
2,669,344 - Echvi_2250 0.47 -0.2
2,669,344 - Echvi_2250 0.47 +0.1
2,669,345 + Echvi_2250 0.47 +0.3
2,669,345 + Echvi_2250 0.47 +1.0
2,669,345 + Echvi_2250 0.47 -0.7
2,669,346 - Echvi_2250 0.48 -0.2
2,669,346 - Echvi_2250 0.48 +0.3
2,669,357 - Echvi_2250 0.53 -2.3
2,669,386 + Echvi_2250 0.68 +0.4
2,669,386 + Echvi_2250 0.68 +0.1
2,669,424 - Echvi_2250 0.87 -0.4
2,669,424 - Echvi_2250 0.87 -0.5
2,669,424 - Echvi_2250 0.87 +1.7
2,669,456 - +0.1
2,669,535 + +0.1
2,669,536 - -0.4
2,669,572 + +0.1
2,669,573 - +1.2
2,669,573 - +1.0
2,669,575 + +0.5
2,669,575 + -1.4
2,669,575 + -0.1
2,669,576 - +0.3
2,669,576 - -0.9
2,669,576 - -0.5
2,669,576 - +1.0
2,669,631 - -0.1
2,669,678 + +0.7
2,669,678 + -0.8
2,669,684 + +0.1
2,669,684 + +0.9
2,669,685 - -0.5
2,669,685 - +0.3
2,669,693 + -0.0
2,669,698 - +0.3
2,669,709 + +0.7
2,669,710 - +0.8
2,669,743 + +0.6
2,669,776 - Echvi_2251 0.14 -0.0
2,669,783 + Echvi_2251 0.18 -0.3
2,669,792 + Echvi_2251 0.23 +1.9
2,669,795 + Echvi_2251 0.24 -1.4
2,669,795 + Echvi_2251 0.24 +0.7
2,669,796 - Echvi_2251 0.25 +0.3
2,669,796 - Echvi_2251 0.25 +0.8
2,669,812 + Echvi_2251 0.34 -0.5
2,669,812 + Echvi_2251 0.34 -0.2
2,669,812 + Echvi_2251 0.34 -0.5
2,669,812 + Echvi_2251 0.34 +0.2
2,669,812 + Echvi_2251 0.34 +1.2
2,669,812 + Echvi_2251 0.34 +0.7
2,669,813 - Echvi_2251 0.34 +0.2
2,669,813 - Echvi_2251 0.34 -0.1
2,669,813 - Echvi_2251 0.34 +0.5
2,669,813 - Echvi_2251 0.34 +1.5
2,669,815 - +2.5
2,669,815 - Echvi_2251 0.36 -1.1
2,669,881 - Echvi_2251 0.73 +0.9
2,669,881 - Echvi_2251 0.73 +0.0
2,669,893 - Echvi_2251 0.80 +0.3
2,669,893 - Echvi_2251 0.80 +1.0
2,669,926 + -0.1
2,669,926 + +0.1
2,669,926 + +0.8
2,670,014 - +1.1
2,670,023 + +0.1
2,670,024 - -0.3
2,670,098 + +1.7
2,670,128 - -0.9
2,670,157 + Echvi_2252 0.10 -0.9
2,670,374 - Echvi_2252 0.31 +0.2
2,670,513 + Echvi_2252 0.44 +0.6
2,670,573 - Echvi_2252 0.50 -0.1
2,670,639 + Echvi_2252 0.56 -0.2
2,670,639 + Echvi_2252 0.56 +0.9
2,670,639 + Echvi_2252 0.56 -1.5
2,670,672 + Echvi_2252 0.60 +0.0
2,670,673 - Echvi_2252 0.60 +0.5
2,670,711 - Echvi_2252 0.63 -0.5
2,670,773 + Echvi_2252 0.69 -0.9
2,670,774 - Echvi_2252 0.69 -0.2
2,670,880 - Echvi_2252 0.79 +1.0
2,670,896 + Echvi_2252 0.81 -0.3
2,670,897 - Echvi_2252 0.81 -2.5

Or see this region's nucleotide sequence