Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1721

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1720 and Echvi_1721 are separated by 64 nucleotidesEchvi_1721 and Echvi_1722 are separated by 608 nucleotides Echvi_1720: Echvi_1720 - hypothetical protein, at 2,029,101 to 2,029,685 _1720 Echvi_1721: Echvi_1721 - hypothetical protein, at 2,029,750 to 2,030,472 _1721 Echvi_1722: Echvi_1722 - hypothetical protein, at 2,031,081 to 2,031,677 _1722 Position (kb) 2029 2030 2031Strain fitness (log2 ratio) -2 -1 0 1 2at 2028.999 kb on + strandat 2029.032 kb on - strandat 2029.101 kb on - strandat 2029.108 kb on + strandat 2029.123 kb on + strandat 2029.123 kb on + strandat 2029.123 kb on + strandat 2029.124 kb on - strandat 2029.126 kb on + strandat 2029.136 kb on + strandat 2029.148 kb on + strandat 2029.148 kb on + strandat 2029.149 kb on - strandat 2029.149 kb on - strandat 2029.191 kb on - strand, within Echvi_1720at 2029.256 kb on - strand, within Echvi_1720at 2029.261 kb on + strand, within Echvi_1720at 2029.262 kb on - strand, within Echvi_1720at 2029.284 kb on - strand, within Echvi_1720at 2029.293 kb on + strand, within Echvi_1720at 2029.294 kb on - strand, within Echvi_1720at 2029.294 kb on - strand, within Echvi_1720at 2029.296 kb on - strand, within Echvi_1720at 2029.317 kb on - strand, within Echvi_1720at 2029.321 kb on + strand, within Echvi_1720at 2029.321 kb on + strand, within Echvi_1720at 2029.322 kb on - strand, within Echvi_1720at 2029.329 kb on - strand, within Echvi_1720at 2029.335 kb on + strand, within Echvi_1720at 2029.365 kb on + strand, within Echvi_1720at 2029.366 kb on - strand, within Echvi_1720at 2029.400 kb on + strand, within Echvi_1720at 2029.449 kb on + strand, within Echvi_1720at 2029.449 kb on + strand, within Echvi_1720at 2029.449 kb on + strand, within Echvi_1720at 2029.450 kb on - strand, within Echvi_1720at 2029.469 kb on - strand, within Echvi_1720at 2029.486 kb on + strand, within Echvi_1720at 2029.487 kb on - strand, within Echvi_1720at 2029.528 kb on + strand, within Echvi_1720at 2029.595 kb on - strand, within Echvi_1720at 2029.668 kb on + strandat 2029.669 kb on - strandat 2029.683 kb on + strandat 2029.694 kb on - strandat 2029.698 kb on - strandat 2029.698 kb on - strandat 2029.944 kb on + strand, within Echvi_1721at 2029.945 kb on - strand, within Echvi_1721at 2029.990 kb on - strand, within Echvi_1721at 2029.996 kb on - strand, within Echvi_1721at 2030.032 kb on + strand, within Echvi_1721at 2030.033 kb on - strand, within Echvi_1721at 2030.109 kb on + strand, within Echvi_1721at 2030.109 kb on + strand, within Echvi_1721at 2030.109 kb on + strand, within Echvi_1721at 2030.110 kb on - strand, within Echvi_1721at 2030.111 kb on + strand, within Echvi_1721at 2030.112 kb on - strand, within Echvi_1721at 2030.112 kb on - strand, within Echvi_1721at 2030.112 kb on - strand, within Echvi_1721at 2030.170 kb on + strand, within Echvi_1721at 2030.171 kb on - strand, within Echvi_1721at 2030.171 kb on - strand, within Echvi_1721at 2030.178 kb on + strand, within Echvi_1721at 2030.179 kb on - strand, within Echvi_1721at 2030.210 kb on - strand, within Echvi_1721at 2030.251 kb on - strand, within Echvi_1721at 2030.365 kb on + strand, within Echvi_1721at 2030.444 kb on - strandat 2030.458 kb on + strandat 2030.473 kb on - strandat 2030.481 kb on + strandat 2030.484 kb on + strandat 2030.485 kb on - strandat 2030.550 kb on + strandat 2030.571 kb on - strandat 2030.804 kb on - strandat 2030.809 kb on - strandat 2030.935 kb on - strandat 2031.019 kb on + strandat 2031.020 kb on - strandat 2031.062 kb on + strandat 2031.062 kb on + strandat 2031.067 kb on + strandat 2031.067 kb on + strandat 2031.068 kb on - strandat 2031.276 kb on - strand, within Echvi_1722at 2031.293 kb on + strand, within Echvi_1722at 2031.297 kb on + strand, within Echvi_1722at 2031.298 kb on - strand, within Echvi_1722at 2031.299 kb on + strand, within Echvi_1722at 2031.327 kb on + strand, within Echvi_1722at 2031.328 kb on - strand, within Echvi_1722at 2031.328 kb on - strand, within Echvi_1722at 2031.329 kb on + strand, within Echvi_1722at 2031.330 kb on - strand, within Echvi_1722at 2031.330 kb on - strand, within Echvi_1722at 2031.357 kb on + strand, within Echvi_1722at 2031.358 kb on - strand, within Echvi_1722at 2031.358 kb on - strand, within Echvi_1722at 2031.358 kb on - strand, within Echvi_1722at 2031.359 kb on + strand, within Echvi_1722at 2031.396 kb on + strand, within Echvi_1722

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,028,999 + +0.3
2,029,032 - +1.4
2,029,101 - -0.0
2,029,108 + -0.0
2,029,123 + -1.2
2,029,123 + +0.1
2,029,123 + -0.4
2,029,124 - -1.0
2,029,126 + +0.1
2,029,136 + -0.6
2,029,148 + +1.8
2,029,148 + -0.1
2,029,149 - +0.7
2,029,149 - +0.1
2,029,191 - Echvi_1720 0.15 +1.0
2,029,256 - Echvi_1720 0.26 -1.5
2,029,261 + Echvi_1720 0.27 -2.2
2,029,262 - Echvi_1720 0.28 +0.4
2,029,284 - Echvi_1720 0.31 -0.1
2,029,293 + Echvi_1720 0.33 +0.6
2,029,294 - Echvi_1720 0.33 +0.2
2,029,294 - Echvi_1720 0.33 -0.2
2,029,296 - Echvi_1720 0.33 +1.0
2,029,317 - Echvi_1720 0.37 +0.4
2,029,321 + Echvi_1720 0.38 -0.2
2,029,321 + Echvi_1720 0.38 +1.0
2,029,322 - Echvi_1720 0.38 +1.7
2,029,329 - Echvi_1720 0.39 -0.4
2,029,335 + Echvi_1720 0.40 -1.1
2,029,365 + Echvi_1720 0.45 -1.7
2,029,366 - Echvi_1720 0.45 -0.3
2,029,400 + Echvi_1720 0.51 +1.5
2,029,449 + Echvi_1720 0.59 -0.7
2,029,449 + Echvi_1720 0.59 +0.4
2,029,449 + Echvi_1720 0.59 +0.4
2,029,450 - Echvi_1720 0.60 -0.4
2,029,469 - Echvi_1720 0.63 +0.1
2,029,486 + Echvi_1720 0.66 +0.1
2,029,487 - Echvi_1720 0.66 -1.8
2,029,528 + Echvi_1720 0.73 -1.2
2,029,595 - Echvi_1720 0.84 +1.6
2,029,668 + -0.1
2,029,669 - -1.2
2,029,683 + +1.6
2,029,694 - -0.4
2,029,698 - -0.6
2,029,698 - -0.3
2,029,944 + Echvi_1721 0.27 +0.5
2,029,945 - Echvi_1721 0.27 +1.3
2,029,990 - Echvi_1721 0.33 -1.0
2,029,996 - Echvi_1721 0.34 -0.1
2,030,032 + Echvi_1721 0.39 +2.0
2,030,033 - Echvi_1721 0.39 +0.1
2,030,109 + Echvi_1721 0.50 +0.5
2,030,109 + Echvi_1721 0.50 +0.2
2,030,109 + Echvi_1721 0.50 -0.1
2,030,110 - Echvi_1721 0.50 +0.6
2,030,111 + Echvi_1721 0.50 +2.6
2,030,112 - Echvi_1721 0.50 +0.3
2,030,112 - Echvi_1721 0.50 -0.6
2,030,112 - Echvi_1721 0.50 +0.4
2,030,170 + Echvi_1721 0.58 -0.5
2,030,171 - Echvi_1721 0.58 +1.1
2,030,171 - Echvi_1721 0.58 -0.2
2,030,178 + Echvi_1721 0.59 -0.1
2,030,179 - Echvi_1721 0.59 +0.4
2,030,210 - Echvi_1721 0.64 -0.2
2,030,251 - Echvi_1721 0.69 +0.8
2,030,365 + Echvi_1721 0.85 +0.7
2,030,444 - -0.1
2,030,458 + -0.6
2,030,473 - +0.6
2,030,481 + +0.5
2,030,484 + -0.0
2,030,485 - -1.4
2,030,550 + -0.2
2,030,571 - -0.0
2,030,804 - -0.2
2,030,809 - +0.6
2,030,935 - +0.1
2,031,019 + +0.9
2,031,020 - -2.7
2,031,062 + +0.1
2,031,062 + -0.6
2,031,067 + +1.3
2,031,067 + -0.5
2,031,068 - +0.5
2,031,276 - Echvi_1722 0.33 -0.3
2,031,293 + Echvi_1722 0.36 -0.5
2,031,297 + Echvi_1722 0.36 -1.1
2,031,298 - Echvi_1722 0.36 +0.2
2,031,299 + Echvi_1722 0.37 +0.5
2,031,327 + Echvi_1722 0.41 +0.2
2,031,328 - Echvi_1722 0.41 -0.8
2,031,328 - Echvi_1722 0.41 -0.9
2,031,329 + Echvi_1722 0.42 -0.7
2,031,330 - Echvi_1722 0.42 -0.4
2,031,330 - Echvi_1722 0.42 -0.0
2,031,357 + Echvi_1722 0.46 -1.2
2,031,358 - Echvi_1722 0.46 +0.3
2,031,358 - Echvi_1722 0.46 +0.3
2,031,358 - Echvi_1722 0.46 -0.0
2,031,359 + Echvi_1722 0.47 -1.4
2,031,396 + Echvi_1722 0.53 -1.7

Or see this region's nucleotide sequence