Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1718

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1717 and Echvi_1718 are separated by 408 nucleotidesEchvi_1718 and Echvi_1719 are separated by 205 nucleotides Echvi_1717: Echvi_1717 - hypothetical protein, at 2,025,769 to 2,026,950 _1717 Echvi_1718: Echvi_1718 - hypothetical protein, at 2,027,359 to 2,027,964 _1718 Echvi_1719: Echvi_1719 - hypothetical protein, at 2,028,170 to 2,028,310 _1719 Position (kb) 2027 2028Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2026.421 kb on - strand, within Echvi_1717at 2026.452 kb on + strand, within Echvi_1717at 2026.485 kb on + strand, within Echvi_1717at 2026.632 kb on - strand, within Echvi_1717at 2026.636 kb on - strand, within Echvi_1717at 2026.732 kb on + strand, within Echvi_1717at 2026.732 kb on + strand, within Echvi_1717at 2026.735 kb on + strand, within Echvi_1717at 2026.738 kb on - strand, within Echvi_1717at 2026.742 kb on + strand, within Echvi_1717at 2026.786 kb on + strand, within Echvi_1717at 2026.786 kb on + strand, within Echvi_1717at 2026.786 kb on + strand, within Echvi_1717at 2026.786 kb on + strandat 2026.787 kb on - strand, within Echvi_1717at 2026.787 kb on - strand, within Echvi_1717at 2026.788 kb on + strand, within Echvi_1717at 2026.788 kb on + strand, within Echvi_1717at 2026.788 kb on + strand, within Echvi_1717at 2026.788 kb on + strand, within Echvi_1717at 2026.788 kb on + strand, within Echvi_1717at 2026.788 kb on + strand, within Echvi_1717at 2026.789 kb on - strand, within Echvi_1717at 2026.789 kb on - strand, within Echvi_1717at 2026.789 kb on - strand, within Echvi_1717at 2026.789 kb on - strand, within Echvi_1717at 2026.833 kb on - strandat 2026.875 kb on + strandat 2026.875 kb on + strandat 2026.875 kb on + strandat 2026.875 kb on + strandat 2026.876 kb on - strandat 2026.879 kb on + strandat 2026.908 kb on - strandat 2026.919 kb on - strandat 2026.920 kb on + strandat 2026.920 kb on + strandat 2026.921 kb on - strandat 2026.921 kb on - strandat 2026.931 kb on - strandat 2026.948 kb on + strandat 2026.949 kb on - strandat 2026.949 kb on - strandat 2027.048 kb on - strandat 2027.049 kb on + strandat 2027.049 kb on + strandat 2027.049 kb on + strandat 2027.061 kb on - strandat 2027.064 kb on + strandat 2027.083 kb on + strandat 2027.089 kb on + strandat 2027.089 kb on + strandat 2027.090 kb on - strandat 2027.090 kb on - strandat 2027.090 kb on - strandat 2027.092 kb on - strandat 2027.103 kb on + strandat 2027.104 kb on - strandat 2027.260 kb on - strandat 2027.260 kb on - strandat 2027.266 kb on - strandat 2027.266 kb on - strandat 2027.302 kb on + strandat 2027.337 kb on + strandat 2027.366 kb on + strandat 2027.366 kb on + strandat 2027.367 kb on - strandat 2027.371 kb on - strandat 2027.376 kb on - strandat 2027.376 kb on - strandat 2027.410 kb on - strandat 2027.557 kb on - strand, within Echvi_1718at 2027.571 kb on + strand, within Echvi_1718at 2027.611 kb on + strand, within Echvi_1718at 2027.612 kb on - strand, within Echvi_1718at 2027.618 kb on + strand, within Echvi_1718at 2027.618 kb on + strand, within Echvi_1718at 2027.618 kb on + strand, within Echvi_1718at 2027.742 kb on - strand, within Echvi_1718at 2027.803 kb on + strand, within Echvi_1718at 2027.803 kb on + strand, within Echvi_1718at 2027.804 kb on - strand, within Echvi_1718at 2027.891 kb on + strand, within Echvi_1718at 2027.892 kb on - strand, within Echvi_1718at 2027.900 kb on + strand, within Echvi_1718at 2027.901 kb on - strand, within Echvi_1718at 2027.963 kb on - strandat 2027.976 kb on + strandat 2027.980 kb on + strandat 2027.981 kb on - strandat 2028.004 kb on - strandat 2028.004 kb on - strandat 2028.004 kb on - strandat 2028.082 kb on + strandat 2028.083 kb on - strandat 2028.083 kb on - strandat 2028.093 kb on + strandat 2028.122 kb on - strandat 2028.146 kb on - strandat 2028.206 kb on + strand, within Echvi_1719at 2028.225 kb on - strand, within Echvi_1719at 2028.327 kb on - strandat 2028.327 kb on - strandat 2028.351 kb on - strandat 2028.366 kb on + strandat 2028.379 kb on + strandat 2028.405 kb on - strandat 2028.420 kb on + strandat 2028.421 kb on - strandat 2028.453 kb on - strandat 2028.500 kb on + strandat 2028.500 kb on + strandat 2028.500 kb on + strandat 2028.501 kb on - strandat 2028.501 kb on - strandat 2028.501 kb on - strandat 2028.548 kb on - strandat 2028.573 kb on + strandat 2028.574 kb on - strandat 2028.642 kb on - strandat 2028.714 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,026,421 - Echvi_1717 0.55 -0.3
2,026,452 + Echvi_1717 0.58 +1.6
2,026,485 + Echvi_1717 0.61 -1.2
2,026,632 - Echvi_1717 0.73 -0.2
2,026,636 - Echvi_1717 0.73 -0.4
2,026,732 + Echvi_1717 0.81 -0.4
2,026,732 + Echvi_1717 0.81 -0.3
2,026,735 + Echvi_1717 0.82 -0.7
2,026,738 - Echvi_1717 0.82 +0.5
2,026,742 + Echvi_1717 0.82 +0.1
2,026,786 + Echvi_1717 0.86 -0.6
2,026,786 + Echvi_1717 0.86 -0.2
2,026,786 + Echvi_1717 0.86 -0.0
2,026,786 + +1.6
2,026,787 - Echvi_1717 0.86 +0.6
2,026,787 - Echvi_1717 0.86 +0.7
2,026,788 + Echvi_1717 0.86 +0.3
2,026,788 + Echvi_1717 0.86 -0.4
2,026,788 + Echvi_1717 0.86 +0.2
2,026,788 + Echvi_1717 0.86 -0.3
2,026,788 + Echvi_1717 0.86 -0.1
2,026,788 + Echvi_1717 0.86 +0.6
2,026,789 - Echvi_1717 0.86 -0.0
2,026,789 - Echvi_1717 0.86 +0.1
2,026,789 - Echvi_1717 0.86 +1.4
2,026,789 - Echvi_1717 0.86 -0.3
2,026,833 - +0.5
2,026,875 + +2.8
2,026,875 + -0.3
2,026,875 + +0.8
2,026,875 + +0.3
2,026,876 - -0.8
2,026,879 + +0.9
2,026,908 - -0.9
2,026,919 - +1.4
2,026,920 + -0.3
2,026,920 + -0.0
2,026,921 - -0.1
2,026,921 - +0.5
2,026,931 - +0.2
2,026,948 + +0.3
2,026,949 - +1.8
2,026,949 - -0.9
2,027,048 - +0.3
2,027,049 + +0.6
2,027,049 + +0.1
2,027,049 + +0.5
2,027,061 - +0.1
2,027,064 + -0.2
2,027,083 + +1.2
2,027,089 + -0.1
2,027,089 + +0.1
2,027,090 - -0.6
2,027,090 - +0.0
2,027,090 - +1.6
2,027,092 - +0.3
2,027,103 + -0.6
2,027,104 - +0.8
2,027,260 - +1.8
2,027,260 - +0.4
2,027,266 - -0.5
2,027,266 - +0.4
2,027,302 + +0.3
2,027,337 + +0.0
2,027,366 + -2.1
2,027,366 + -1.4
2,027,367 - +0.7
2,027,371 - +0.1
2,027,376 - +0.5
2,027,376 - +1.1
2,027,410 - +0.4
2,027,557 - Echvi_1718 0.33 +0.8
2,027,571 + Echvi_1718 0.35 +0.4
2,027,611 + Echvi_1718 0.42 -1.0
2,027,612 - Echvi_1718 0.42 +0.6
2,027,618 + Echvi_1718 0.43 +1.5
2,027,618 + Echvi_1718 0.43 -0.1
2,027,618 + Echvi_1718 0.43 +0.1
2,027,742 - Echvi_1718 0.63 +0.8
2,027,803 + Echvi_1718 0.73 +0.3
2,027,803 + Echvi_1718 0.73 +0.1
2,027,804 - Echvi_1718 0.73 +0.5
2,027,891 + Echvi_1718 0.88 -1.0
2,027,892 - Echvi_1718 0.88 -0.3
2,027,900 + Echvi_1718 0.89 +2.4
2,027,901 - Echvi_1718 0.89 +0.6
2,027,963 - -0.7
2,027,976 + +0.8
2,027,980 + +2.0
2,027,981 - +0.3
2,028,004 - -0.0
2,028,004 - -0.8
2,028,004 - -0.9
2,028,082 + +1.2
2,028,083 - -0.6
2,028,083 - +0.1
2,028,093 + -1.1
2,028,122 - +1.4
2,028,146 - +0.5
2,028,206 + Echvi_1719 0.26 -0.3
2,028,225 - Echvi_1719 0.39 -0.6
2,028,327 - +0.3
2,028,327 - -1.0
2,028,351 - +0.5
2,028,366 + +0.1
2,028,379 + -0.1
2,028,405 - +0.3
2,028,420 + -0.5
2,028,421 - -0.5
2,028,453 - +1.4
2,028,500 + -0.0
2,028,500 + -0.2
2,028,500 + +0.3
2,028,501 - +0.1
2,028,501 - -0.0
2,028,501 - -2.7
2,028,548 - -1.9
2,028,573 + +0.2
2,028,574 - +0.1
2,028,642 - +0.3
2,028,714 - -1.6

Or see this region's nucleotide sequence