Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1694

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1693 and Echvi_1694 are separated by 109 nucleotidesEchvi_1694 and Echvi_1695 are separated by 78 nucleotides Echvi_1693: Echvi_1693 - Uncharacterized protein conserved in bacteria, at 1,984,183 to 1,985,574 _1693 Echvi_1694: Echvi_1694 - Hydantoin racemase, at 1,985,684 to 1,986,340 _1694 Echvi_1695: Echvi_1695 - Predicted Na+-dependent transporter, at 1,986,419 to 1,987,699 _1695 Position (kb) 1985 1986 1987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1984.730 kb on + strand, within Echvi_1693at 1984.843 kb on + strand, within Echvi_1693at 1984.843 kb on + strand, within Echvi_1693at 1984.843 kb on + strand, within Echvi_1693at 1984.843 kb on + strand, within Echvi_1693at 1984.843 kb on + strand, within Echvi_1693at 1984.843 kb on + strand, within Echvi_1693at 1984.983 kb on - strand, within Echvi_1693at 1985.100 kb on - strand, within Echvi_1693at 1985.143 kb on + strand, within Echvi_1693at 1985.144 kb on - strand, within Echvi_1693at 1985.144 kb on - strand, within Echvi_1693at 1985.166 kb on - strand, within Echvi_1693at 1985.350 kb on + strand, within Echvi_1693at 1985.351 kb on - strand, within Echvi_1693at 1985.379 kb on + strand, within Echvi_1693at 1985.438 kb on + strandat 1985.536 kb on + strandat 1985.537 kb on - strandat 1985.598 kb on + strandat 1985.601 kb on + strandat 1985.602 kb on - strandat 1985.602 kb on - strandat 1985.694 kb on + strandat 1985.766 kb on + strand, within Echvi_1694at 1985.766 kb on + strand, within Echvi_1694at 1985.767 kb on - strand, within Echvi_1694at 1985.767 kb on - strand, within Echvi_1694at 1985.767 kb on - strand, within Echvi_1694at 1985.767 kb on - strand, within Echvi_1694at 1985.767 kb on - strand, within Echvi_1694at 1985.772 kb on + strand, within Echvi_1694at 1985.776 kb on + strand, within Echvi_1694at 1985.776 kb on + strand, within Echvi_1694at 1985.777 kb on - strand, within Echvi_1694at 1985.779 kb on + strand, within Echvi_1694at 1985.779 kb on + strand, within Echvi_1694at 1985.858 kb on + strand, within Echvi_1694at 1986.024 kb on + strand, within Echvi_1694at 1986.100 kb on + strand, within Echvi_1694at 1986.211 kb on - strand, within Echvi_1694at 1986.211 kb on - strand, within Echvi_1694at 1986.211 kb on - strand, within Echvi_1694at 1986.238 kb on + strand, within Echvi_1694at 1986.317 kb on + strandat 1986.317 kb on + strandat 1986.338 kb on + strandat 1986.339 kb on - strandat 1986.339 kb on - strandat 1986.397 kb on + strandat 1986.397 kb on + strandat 1986.397 kb on + strandat 1986.398 kb on - strandat 1986.399 kb on + strandat 1986.413 kb on + strandat 1986.479 kb on - strandat 1986.499 kb on + strandat 1986.500 kb on - strandat 1986.587 kb on + strand, within Echvi_1695at 1986.587 kb on + strand, within Echvi_1695at 1986.588 kb on - strand, within Echvi_1695at 1986.589 kb on + strand, within Echvi_1695at 1986.590 kb on - strand, within Echvi_1695at 1986.684 kb on + strand, within Echvi_1695at 1986.687 kb on + strand, within Echvi_1695at 1986.687 kb on + strand, within Echvi_1695at 1986.688 kb on - strand, within Echvi_1695at 1986.688 kb on - strand, within Echvi_1695at 1986.688 kb on - strand, within Echvi_1695at 1986.735 kb on + strand, within Echvi_1695at 1986.780 kb on + strand, within Echvi_1695at 1986.816 kb on + strand, within Echvi_1695at 1986.823 kb on + strand, within Echvi_1695at 1986.824 kb on - strand, within Echvi_1695at 1986.824 kb on - strand, within Echvi_1695at 1986.824 kb on - strand, within Echvi_1695at 1986.859 kb on - strandat 1986.859 kb on - strand, within Echvi_1695at 1986.921 kb on - strand, within Echvi_1695at 1986.921 kb on - strand, within Echvi_1695at 1987.060 kb on + strand, within Echvi_1695at 1987.060 kb on + strand, within Echvi_1695at 1987.064 kb on - strand, within Echvi_1695at 1987.075 kb on - strand, within Echvi_1695at 1987.211 kb on + strand, within Echvi_1695at 1987.212 kb on - strand, within Echvi_1695at 1987.212 kb on - strand, within Echvi_1695at 1987.336 kb on - strand, within Echvi_1695

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,984,730 + Echvi_1693 0.39 +0.4
1,984,843 + Echvi_1693 0.47 -0.4
1,984,843 + Echvi_1693 0.47 +1.8
1,984,843 + Echvi_1693 0.47 -0.5
1,984,843 + Echvi_1693 0.47 +1.0
1,984,843 + Echvi_1693 0.47 +0.9
1,984,843 + Echvi_1693 0.47 -0.2
1,984,983 - Echvi_1693 0.57 +0.4
1,985,100 - Echvi_1693 0.66 +0.3
1,985,143 + Echvi_1693 0.69 +1.7
1,985,144 - Echvi_1693 0.69 +0.6
1,985,144 - Echvi_1693 0.69 -2.1
1,985,166 - Echvi_1693 0.71 -2.8
1,985,350 + Echvi_1693 0.84 +0.9
1,985,351 - Echvi_1693 0.84 -0.2
1,985,379 + Echvi_1693 0.86 -1.0
1,985,438 + -0.4
1,985,536 + +0.9
1,985,537 - -0.2
1,985,598 + +1.7
1,985,601 + -0.8
1,985,602 - +0.4
1,985,602 - +0.0
1,985,694 + +0.6
1,985,766 + Echvi_1694 0.12 -0.1
1,985,766 + Echvi_1694 0.12 -1.1
1,985,767 - Echvi_1694 0.13 -0.0
1,985,767 - Echvi_1694 0.13 -0.1
1,985,767 - Echvi_1694 0.13 -1.4
1,985,767 - Echvi_1694 0.13 -0.1
1,985,767 - Echvi_1694 0.13 -0.4
1,985,772 + Echvi_1694 0.13 +0.5
1,985,776 + Echvi_1694 0.14 +0.1
1,985,776 + Echvi_1694 0.14 +0.1
1,985,777 - Echvi_1694 0.14 +0.7
1,985,779 + Echvi_1694 0.14 -0.7
1,985,779 + Echvi_1694 0.14 -2.1
1,985,858 + Echvi_1694 0.26 -1.0
1,986,024 + Echvi_1694 0.52 +0.8
1,986,100 + Echvi_1694 0.63 -0.4
1,986,211 - Echvi_1694 0.80 -1.2
1,986,211 - Echvi_1694 0.80 -0.8
1,986,211 - Echvi_1694 0.80 -1.3
1,986,238 + Echvi_1694 0.84 +0.3
1,986,317 + +0.6
1,986,317 + -0.1
1,986,338 + -0.1
1,986,339 - -0.9
1,986,339 - -2.5
1,986,397 + -1.7
1,986,397 + -0.7
1,986,397 + -0.7
1,986,398 - +0.2
1,986,399 + -0.5
1,986,413 + -0.8
1,986,479 - -0.3
1,986,499 + +0.6
1,986,500 - +1.7
1,986,587 + Echvi_1695 0.13 -0.5
1,986,587 + Echvi_1695 0.13 +0.7
1,986,588 - Echvi_1695 0.13 +0.5
1,986,589 + Echvi_1695 0.13 -0.3
1,986,590 - Echvi_1695 0.13 -0.8
1,986,684 + Echvi_1695 0.21 -1.2
1,986,687 + Echvi_1695 0.21 +0.4
1,986,687 + Echvi_1695 0.21 +0.4
1,986,688 - Echvi_1695 0.21 -0.2
1,986,688 - Echvi_1695 0.21 -0.4
1,986,688 - Echvi_1695 0.21 -0.7
1,986,735 + Echvi_1695 0.25 +1.4
1,986,780 + Echvi_1695 0.28 +0.5
1,986,816 + Echvi_1695 0.31 -0.8
1,986,823 + Echvi_1695 0.32 -0.6
1,986,824 - Echvi_1695 0.32 +0.2
1,986,824 - Echvi_1695 0.32 -0.2
1,986,824 - Echvi_1695 0.32 -0.2
1,986,859 - +1.3
1,986,859 - Echvi_1695 0.34 -0.1
1,986,921 - Echvi_1695 0.39 +0.7
1,986,921 - Echvi_1695 0.39 -0.9
1,987,060 + Echvi_1695 0.50 +0.9
1,987,060 + Echvi_1695 0.50 -0.4
1,987,064 - Echvi_1695 0.50 -0.5
1,987,075 - Echvi_1695 0.51 +2.1
1,987,211 + Echvi_1695 0.62 +0.5
1,987,212 - Echvi_1695 0.62 -0.4
1,987,212 - Echvi_1695 0.62 +0.8
1,987,336 - Echvi_1695 0.72 -0.0

Or see this region's nucleotide sequence