Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1336

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1335 and Echvi_1336 are separated by 175 nucleotidesEchvi_1336 and Echvi_1337 are separated by 63 nucleotidesEchvi_1337 and Echvi_1338 are separated by 79 nucleotides Echvi_1335: Echvi_1335 - Universal stress protein UspA and related nucleotide-binding proteins, at 1,546,394 to 1,547,308 _1335 Echvi_1336: Echvi_1336 - 2'-5' RNA ligase, at 1,547,484 to 1,548,110 _1336 Echvi_1337: Echvi_1337 - ribosomal protein L19, bacterial type, at 1,548,174 to 1,548,539 _1337 Echvi_1338: Echvi_1338 - tRNA (guanine-N1)-methyltransferase, at 1,548,619 to 1,549,326 _1338 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -2 -1 0 1at 1546.551 kb on - strand, within Echvi_1335at 1546.551 kb on - strand, within Echvi_1335at 1546.610 kb on - strand, within Echvi_1335at 1546.614 kb on - strand, within Echvi_1335at 1546.664 kb on - strand, within Echvi_1335at 1546.752 kb on + strand, within Echvi_1335at 1546.753 kb on - strand, within Echvi_1335at 1546.762 kb on + strand, within Echvi_1335at 1546.763 kb on - strand, within Echvi_1335at 1546.763 kb on - strand, within Echvi_1335at 1546.763 kb on - strand, within Echvi_1335at 1546.763 kb on - strand, within Echvi_1335at 1546.820 kb on + strand, within Echvi_1335at 1546.828 kb on + strand, within Echvi_1335at 1546.856 kb on + strand, within Echvi_1335at 1546.883 kb on - strand, within Echvi_1335at 1546.988 kb on + strand, within Echvi_1335at 1546.989 kb on - strand, within Echvi_1335at 1547.061 kb on - strand, within Echvi_1335at 1547.124 kb on - strand, within Echvi_1335at 1547.146 kb on - strand, within Echvi_1335at 1547.149 kb on + strand, within Echvi_1335at 1547.149 kb on + strand, within Echvi_1335at 1547.150 kb on - strand, within Echvi_1335at 1547.158 kb on + strand, within Echvi_1335at 1547.158 kb on + strand, within Echvi_1335at 1547.211 kb on - strand, within Echvi_1335at 1547.246 kb on + strandat 1547.294 kb on - strandat 1547.294 kb on - strandat 1547.294 kb on - strandat 1547.309 kb on - strandat 1547.317 kb on + strandat 1547.339 kb on + strandat 1547.339 kb on + strandat 1547.343 kb on + strandat 1547.344 kb on - strandat 1547.354 kb on + strandat 1547.418 kb on - strandat 1547.423 kb on + strandat 1547.443 kb on + strandat 1547.443 kb on + strandat 1547.473 kb on + strandat 1547.474 kb on - strandat 1547.474 kb on - strandat 1547.505 kb on + strandat 1547.508 kb on + strandat 1547.508 kb on + strandat 1547.514 kb on - strandat 1547.524 kb on - strandat 1547.612 kb on - strand, within Echvi_1336at 1547.635 kb on - strand, within Echvi_1336at 1547.635 kb on - strand, within Echvi_1336at 1547.804 kb on + strand, within Echvi_1336at 1547.805 kb on - strand, within Echvi_1336at 1547.805 kb on - strand, within Echvi_1336at 1547.805 kb on - strand, within Echvi_1336at 1547.870 kb on + strand, within Echvi_1336at 1547.915 kb on + strand, within Echvi_1336at 1547.916 kb on - strand, within Echvi_1336at 1548.061 kb on + strandat 1548.084 kb on - strandat 1548.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,546,551 - Echvi_1335 0.17 +0.4
1,546,551 - Echvi_1335 0.17 +0.0
1,546,610 - Echvi_1335 0.24 +0.9
1,546,614 - Echvi_1335 0.24 +0.3
1,546,664 - Echvi_1335 0.30 -0.4
1,546,752 + Echvi_1335 0.39 -0.4
1,546,753 - Echvi_1335 0.39 -0.1
1,546,762 + Echvi_1335 0.40 +0.2
1,546,763 - Echvi_1335 0.40 +0.2
1,546,763 - Echvi_1335 0.40 +1.6
1,546,763 - Echvi_1335 0.40 +0.7
1,546,763 - Echvi_1335 0.40 +0.8
1,546,820 + Echvi_1335 0.47 -0.1
1,546,828 + Echvi_1335 0.47 +0.2
1,546,856 + Echvi_1335 0.50 -1.0
1,546,883 - Echvi_1335 0.53 -1.0
1,546,988 + Echvi_1335 0.65 -0.0
1,546,989 - Echvi_1335 0.65 -0.6
1,547,061 - Echvi_1335 0.73 -2.2
1,547,124 - Echvi_1335 0.80 -0.1
1,547,146 - Echvi_1335 0.82 +1.4
1,547,149 + Echvi_1335 0.83 -0.4
1,547,149 + Echvi_1335 0.83 -1.1
1,547,150 - Echvi_1335 0.83 -0.3
1,547,158 + Echvi_1335 0.83 +1.0
1,547,158 + Echvi_1335 0.83 +0.2
1,547,211 - Echvi_1335 0.89 -0.3
1,547,246 + +0.3
1,547,294 - +0.7
1,547,294 - +0.8
1,547,294 - +0.2
1,547,309 - -0.7
1,547,317 + +0.3
1,547,339 + -0.7
1,547,339 + -0.2
1,547,343 + +0.6
1,547,344 - -0.0
1,547,354 + +0.3
1,547,418 - +0.7
1,547,423 + +0.0
1,547,443 + +0.7
1,547,443 + -1.2
1,547,473 + +0.1
1,547,474 - +0.2
1,547,474 - +0.5
1,547,505 + +0.4
1,547,508 + +0.1
1,547,508 + +0.7
1,547,514 - -1.7
1,547,524 - +0.6
1,547,612 - Echvi_1336 0.20 -0.7
1,547,635 - Echvi_1336 0.24 -0.0
1,547,635 - Echvi_1336 0.24 -0.0
1,547,804 + Echvi_1336 0.51 -0.6
1,547,805 - Echvi_1336 0.51 -1.7
1,547,805 - Echvi_1336 0.51 -0.7
1,547,805 - Echvi_1336 0.51 -1.1
1,547,870 + Echvi_1336 0.62 -0.2
1,547,915 + Echvi_1336 0.69 -1.7
1,547,916 - Echvi_1336 0.69 -0.6
1,548,061 + -0.0
1,548,084 - -1.9
1,548,084 - +0.2

Or see this region's nucleotide sequence