Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1313 and Echvi_1314 overlap by 24 nucleotides Echvi_1314 and Echvi_1315 are separated by 2 nucleotides Echvi_1315 and Echvi_1316 are separated by 483 nucleotides
Echvi_1313: Echvi_1313 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 1,516,293 to 1,516,940
_1313
Echvi_1314: Echvi_1314 - 16S RNA G1207 methylase RsmC, at 1,516,917 to 1,517,861
_1314
Echvi_1315: Echvi_1315 - exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase, at 1,517,864 to 1,519,234
_1315
Echvi_1316: Echvi_1316 - Predicted membrane protein involved in D-alanine export, at 1,519,718 to 1,521,145
_1316
Position (kb)
1517
1518
1519
1520 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1516.879 kb on - strand at 1517.071 kb on + strand, within Echvi_1314 at 1517.072 kb on - strand, within Echvi_1314 at 1517.102 kb on + strand, within Echvi_1314 at 1517.102 kb on + strand, within Echvi_1314 at 1517.102 kb on + strand, within Echvi_1314 at 1517.102 kb on + strand, within Echvi_1314 at 1517.103 kb on - strand, within Echvi_1314 at 1517.103 kb on - strand, within Echvi_1314 at 1517.103 kb on - strand, within Echvi_1314 at 1517.105 kb on + strand, within Echvi_1314 at 1517.106 kb on - strand, within Echvi_1314 at 1517.106 kb on - strand, within Echvi_1314 at 1517.106 kb on - strand, within Echvi_1314 at 1517.106 kb on - strand, within Echvi_1314 at 1517.110 kb on + strand, within Echvi_1314 at 1517.111 kb on - strand, within Echvi_1314 at 1517.111 kb on - strand, within Echvi_1314 at 1517.148 kb on + strand, within Echvi_1314 at 1517.148 kb on + strand, within Echvi_1314 at 1517.149 kb on - strand, within Echvi_1314 at 1517.171 kb on + strand, within Echvi_1314 at 1517.282 kb on + strand, within Echvi_1314 at 1517.293 kb on - strand, within Echvi_1314 at 1517.327 kb on + strand, within Echvi_1314 at 1517.327 kb on + strand, within Echvi_1314 at 1517.327 kb on + strand, within Echvi_1314 at 1517.328 kb on - strand, within Echvi_1314 at 1517.328 kb on - strand, within Echvi_1314 at 1517.328 kb on - strand, within Echvi_1314 at 1517.374 kb on - strand, within Echvi_1314 at 1517.381 kb on - strand, within Echvi_1314 at 1517.381 kb on - strand, within Echvi_1314 at 1517.435 kb on + strand, within Echvi_1314 at 1517.486 kb on - strand, within Echvi_1314 at 1517.491 kb on - strand, within Echvi_1314 at 1517.591 kb on + strand, within Echvi_1314 at 1517.591 kb on + strand, within Echvi_1314 at 1517.620 kb on - strand, within Echvi_1314 at 1517.620 kb on - strand, within Echvi_1314 at 1517.628 kb on + strand, within Echvi_1314 at 1517.658 kb on + strand, within Echvi_1314 at 1517.658 kb on + strand, within Echvi_1314 at 1517.659 kb on - strand, within Echvi_1314 at 1517.674 kb on + strand, within Echvi_1314 at 1517.677 kb on + strand, within Echvi_1314 at 1517.677 kb on + strand, within Echvi_1314 at 1517.678 kb on - strand, within Echvi_1314 at 1517.678 kb on - strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.692 kb on + strand, within Echvi_1314 at 1517.693 kb on - strand, within Echvi_1314 at 1517.693 kb on - strand, within Echvi_1314 at 1517.693 kb on - strand, within Echvi_1314 at 1517.693 kb on - strand, within Echvi_1314 at 1517.755 kb on + strand, within Echvi_1314 at 1517.756 kb on - strand, within Echvi_1314 at 1517.829 kb on + strand at 1517.830 kb on - strand at 1517.834 kb on + strand at 1517.835 kb on - strand at 1517.835 kb on - strand at 1517.840 kb on + strand at 1517.840 kb on + strand at 1517.840 kb on + strand at 1517.953 kb on - strand at 1517.953 kb on - strand at 1517.958 kb on + strand at 1518.020 kb on + strand, within Echvi_1315 at 1518.020 kb on + strand, within Echvi_1315 at 1518.021 kb on - strand, within Echvi_1315 at 1518.021 kb on - strand, within Echvi_1315 at 1518.021 kb on - strand, within Echvi_1315 at 1518.037 kb on + strand, within Echvi_1315 at 1518.050 kb on + strand, within Echvi_1315 at 1518.051 kb on - strand, within Echvi_1315 at 1518.051 kb on - strand, within Echvi_1315 at 1518.051 kb on - strand, within Echvi_1315 at 1518.070 kb on - strand, within Echvi_1315 at 1518.113 kb on - strand, within Echvi_1315 at 1518.139 kb on + strand, within Echvi_1315 at 1518.140 kb on - strand, within Echvi_1315 at 1518.220 kb on + strand, within Echvi_1315 at 1518.221 kb on - strand, within Echvi_1315 at 1518.338 kb on - strand, within Echvi_1315 at 1518.406 kb on + strand, within Echvi_1315 at 1518.406 kb on + strand, within Echvi_1315 at 1518.427 kb on + strand, within Echvi_1315 at 1518.442 kb on + strand, within Echvi_1315 at 1518.443 kb on - strand at 1518.443 kb on - strand, within Echvi_1315 at 1518.446 kb on + strand, within Echvi_1315 at 1518.482 kb on + strand, within Echvi_1315 at 1518.482 kb on + strand, within Echvi_1315 at 1518.483 kb on - strand, within Echvi_1315 at 1518.573 kb on + strand, within Echvi_1315 at 1518.573 kb on + strand, within Echvi_1315 at 1518.574 kb on - strand, within Echvi_1315 at 1518.589 kb on - strand, within Echvi_1315 at 1518.632 kb on + strand, within Echvi_1315 at 1518.633 kb on - strand, within Echvi_1315 at 1518.635 kb on - strand, within Echvi_1315 at 1518.636 kb on + strand, within Echvi_1315 at 1518.637 kb on - strand, within Echvi_1315 at 1518.683 kb on + strand, within Echvi_1315 at 1518.727 kb on - strand, within Echvi_1315 at 1518.727 kb on - strand, within Echvi_1315 at 1518.782 kb on - strand, within Echvi_1315 at 1518.783 kb on + strand, within Echvi_1315 at 1518.783 kb on + strand, within Echvi_1315 at 1518.784 kb on - strand, within Echvi_1315 at 1518.784 kb on - strand, within Echvi_1315 at 1518.784 kb on - strand, within Echvi_1315 at 1518.820 kb on + strand, within Echvi_1315 at 1518.820 kb on + strand, within Echvi_1315 at 1518.820 kb on + strand, within Echvi_1315 at 1518.820 kb on + strand, within Echvi_1315 at 1518.822 kb on + strand, within Echvi_1315 at 1518.822 kb on + strand, within Echvi_1315 at 1518.939 kb on + strand, within Echvi_1315 at 1518.968 kb on + strand, within Echvi_1315 at 1518.969 kb on - strand, within Echvi_1315 at 1518.969 kb on - strand, within Echvi_1315 at 1518.989 kb on + strand, within Echvi_1315 at 1519.010 kb on + strand, within Echvi_1315 at 1519.011 kb on - strand, within Echvi_1315 at 1519.040 kb on + strand, within Echvi_1315 at 1519.040 kb on + strand at 1519.041 kb on - strand, within Echvi_1315 at 1519.041 kb on - strand, within Echvi_1315 at 1519.047 kb on + strand, within Echvi_1315 at 1519.047 kb on + strand, within Echvi_1315 at 1519.071 kb on - strand, within Echvi_1315 at 1519.071 kb on - strand, within Echvi_1315 at 1519.082 kb on - strand, within Echvi_1315 at 1519.082 kb on - strand, within Echvi_1315 at 1519.086 kb on - strand, within Echvi_1315 at 1519.089 kb on + strand, within Echvi_1315 at 1519.089 kb on + strand, within Echvi_1315 at 1519.090 kb on - strand, within Echvi_1315 at 1519.090 kb on - strand, within Echvi_1315 at 1519.090 kb on - strand, within Echvi_1315 at 1519.099 kb on - strand at 1519.123 kb on + strand at 1519.124 kb on - strand at 1519.124 kb on - strand at 1519.131 kb on - strand at 1519.131 kb on - strand at 1519.135 kb on + strand at 1519.173 kb on - strand at 1519.200 kb on - strand at 1519.212 kb on + strand at 1519.218 kb on + strand at 1519.283 kb on + strand at 1519.337 kb on - strand at 1519.338 kb on + strand at 1519.382 kb on + strand at 1519.397 kb on - strand at 1519.602 kb on + strand at 1519.603 kb on - strand at 1519.604 kb on + strand at 1519.604 kb on + strand at 1519.643 kb on - strand at 1519.680 kb on + strand at 1519.682 kb on + strand at 1519.682 kb on + strand at 1519.683 kb on - strand at 1519.683 kb on - strand at 1519.684 kb on + strand at 1519.684 kb on + strand at 1519.684 kb on + strand at 1519.684 kb on + strand at 1519.684 kb on + strand at 1519.684 kb on + strand at 1519.684 kb on + strand at 1519.685 kb on - strand at 1519.685 kb on - strand at 1519.706 kb on + strand at 1519.706 kb on + strand at 1519.706 kb on + strand at 1519.707 kb on - strand at 1519.710 kb on + strand at 1519.710 kb on + strand at 1519.711 kb on - strand at 1519.717 kb on + strand at 1519.717 kb on + strand at 1519.717 kb on + strand at 1519.717 kb on + strand at 1519.717 kb on + strand at 1519.718 kb on - strand at 1519.718 kb on - strand at 1519.718 kb on - strand at 1519.718 kb on - strand at 1519.718 kb on - strand at 1519.718 kb on - strand at 1519.772 kb on + strand at 1519.786 kb on - strand at 1519.797 kb on + strand at 1519.797 kb on + strand at 1519.797 kb on + strand at 1519.797 kb on + strand at 1519.798 kb on - strand at 1519.798 kb on - strand at 1519.798 kb on - strand at 1519.832 kb on + strand at 1519.841 kb on + strand at 1519.842 kb on - strand at 1519.906 kb on - strand, within Echvi_1316 at 1520.007 kb on - strand, within Echvi_1316 at 1520.115 kb on + strand, within Echvi_1316 at 1520.115 kb on + strand, within Echvi_1316 at 1520.129 kb on + strand, within Echvi_1316 at 1520.129 kb on + strand, within Echvi_1316 at 1520.129 kb on + strand, within Echvi_1316 at 1520.130 kb on - strand, within Echvi_1316 at 1520.130 kb on - strand, within Echvi_1316 at 1520.131 kb on + strand, within Echvi_1316 at 1520.137 kb on - strand, within Echvi_1316 at 1520.193 kb on - strand, within Echvi_1316
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 1,516,879 - -0.1 1,517,071 + Echvi_1314 0.16 -0.8 1,517,072 - Echvi_1314 0.16 +0.1 1,517,102 + Echvi_1314 0.20 +0.2 1,517,102 + Echvi_1314 0.20 -0.0 1,517,102 + Echvi_1314 0.20 +0.1 1,517,102 + Echvi_1314 0.20 +0.1 1,517,103 - Echvi_1314 0.20 -0.2 1,517,103 - Echvi_1314 0.20 +1.0 1,517,103 - Echvi_1314 0.20 -0.6 1,517,105 + Echvi_1314 0.20 +0.1 1,517,106 - Echvi_1314 0.20 +0.2 1,517,106 - Echvi_1314 0.20 +0.8 1,517,106 - Echvi_1314 0.20 -0.2 1,517,106 - Echvi_1314 0.20 +0.5 1,517,110 + Echvi_1314 0.20 +0.3 1,517,111 - Echvi_1314 0.21 -0.9 1,517,111 - Echvi_1314 0.21 -1.7 1,517,148 + Echvi_1314 0.24 +1.4 1,517,148 + Echvi_1314 0.24 +0.9 1,517,149 - Echvi_1314 0.25 -0.9 1,517,171 + Echvi_1314 0.27 -0.2 1,517,282 + Echvi_1314 0.39 +0.3 1,517,293 - Echvi_1314 0.40 -0.0 1,517,327 + Echvi_1314 0.43 -1.1 1,517,327 + Echvi_1314 0.43 -0.8 1,517,327 + Echvi_1314 0.43 -0.7 1,517,328 - Echvi_1314 0.43 +0.2 1,517,328 - Echvi_1314 0.43 -0.1 1,517,328 - Echvi_1314 0.43 -0.3 1,517,374 - Echvi_1314 0.48 +0.1 1,517,381 - Echvi_1314 0.49 -0.7 1,517,381 - Echvi_1314 0.49 -0.6 1,517,435 + Echvi_1314 0.55 -0.1 1,517,486 - Echvi_1314 0.60 -0.6 1,517,491 - Echvi_1314 0.61 -0.0 1,517,591 + Echvi_1314 0.71 -0.1 1,517,591 + Echvi_1314 0.71 -1.1 1,517,620 - Echvi_1314 0.74 +0.2 1,517,620 - Echvi_1314 0.74 +0.6 1,517,628 + Echvi_1314 0.75 +0.0 1,517,658 + Echvi_1314 0.78 -0.3 1,517,658 + Echvi_1314 0.78 -1.3 1,517,659 - Echvi_1314 0.79 +0.7 1,517,674 + Echvi_1314 0.80 -0.8 1,517,677 + Echvi_1314 0.80 +0.1 1,517,677 + Echvi_1314 0.80 -1.3 1,517,678 - Echvi_1314 0.81 -0.6 1,517,678 - Echvi_1314 0.81 -1.2 1,517,692 + Echvi_1314 0.82 +1.6 1,517,692 + Echvi_1314 0.82 -0.0 1,517,692 + Echvi_1314 0.82 -0.1 1,517,692 + Echvi_1314 0.82 +0.5 1,517,692 + Echvi_1314 0.82 -1.0 1,517,692 + Echvi_1314 0.82 -1.8 1,517,692 + Echvi_1314 0.82 -1.3 1,517,692 + Echvi_1314 0.82 +0.1 1,517,693 - Echvi_1314 0.82 +1.5 1,517,693 - Echvi_1314 0.82 +1.1 1,517,693 - Echvi_1314 0.82 +0.0 1,517,693 - Echvi_1314 0.82 +0.3 1,517,755 + Echvi_1314 0.89 -0.5 1,517,756 - Echvi_1314 0.89 -1.9 1,517,829 + +0.6 1,517,830 - +0.4 1,517,834 + -0.9 1,517,835 - +0.6 1,517,835 - -0.0 1,517,840 + -0.1 1,517,840 + +0.2 1,517,840 + +0.7 1,517,953 - +0.4 1,517,953 - -0.6 1,517,958 + -0.2 1,518,020 + Echvi_1315 0.11 +0.5 1,518,020 + Echvi_1315 0.11 +1.4 1,518,021 - Echvi_1315 0.11 +0.4 1,518,021 - Echvi_1315 0.11 -0.1 1,518,021 - Echvi_1315 0.11 +0.8 1,518,037 + Echvi_1315 0.13 +0.4 1,518,050 + Echvi_1315 0.14 +0.4 1,518,051 - Echvi_1315 0.14 +0.5 1,518,051 - Echvi_1315 0.14 -0.7 1,518,051 - Echvi_1315 0.14 -0.6 1,518,070 - Echvi_1315 0.15 +0.1 1,518,113 - Echvi_1315 0.18 +0.9 1,518,139 + Echvi_1315 0.20 +0.1 1,518,140 - Echvi_1315 0.20 +0.4 1,518,220 + Echvi_1315 0.26 +0.2 1,518,221 - Echvi_1315 0.26 +0.5 1,518,338 - Echvi_1315 0.35 +0.7 1,518,406 + Echvi_1315 0.40 +0.6 1,518,406 + Echvi_1315 0.40 -0.7 1,518,427 + Echvi_1315 0.41 +0.5 1,518,442 + Echvi_1315 0.42 +1.2 1,518,443 - +0.6 1,518,443 - Echvi_1315 0.42 +0.3 1,518,446 + Echvi_1315 0.42 +0.5 1,518,482 + Echvi_1315 0.45 +1.5 1,518,482 + Echvi_1315 0.45 -0.3 1,518,483 - Echvi_1315 0.45 -0.1 1,518,573 + Echvi_1315 0.52 -0.9 1,518,573 + Echvi_1315 0.52 +0.7 1,518,574 - Echvi_1315 0.52 +0.9 1,518,589 - Echvi_1315 0.53 +0.2 1,518,632 + Echvi_1315 0.56 +0.0 1,518,633 - Echvi_1315 0.56 +0.9 1,518,635 - Echvi_1315 0.56 +1.4 1,518,636 + Echvi_1315 0.56 -1.3 1,518,637 - Echvi_1315 0.56 +1.1 1,518,683 + Echvi_1315 0.60 +0.4 1,518,727 - Echvi_1315 0.63 +0.9 1,518,727 - Echvi_1315 0.63 +0.7 1,518,782 - Echvi_1315 0.67 +0.7 1,518,783 + Echvi_1315 0.67 +0.5 1,518,783 + Echvi_1315 0.67 +0.6 1,518,784 - Echvi_1315 0.67 -0.2 1,518,784 - Echvi_1315 0.67 -0.0 1,518,784 - Echvi_1315 0.67 +0.6 1,518,820 + Echvi_1315 0.70 +0.2 1,518,820 + Echvi_1315 0.70 +0.6 1,518,820 + Echvi_1315 0.70 +0.3 1,518,820 + Echvi_1315 0.70 +1.0 1,518,822 + Echvi_1315 0.70 -0.4 1,518,822 + Echvi_1315 0.70 +0.9 1,518,939 + Echvi_1315 0.78 +0.4 1,518,968 + Echvi_1315 0.81 +0.2 1,518,969 - Echvi_1315 0.81 +0.1 1,518,969 - Echvi_1315 0.81 +0.5 1,518,989 + Echvi_1315 0.82 +1.6 1,519,010 + Echvi_1315 0.84 +0.5 1,519,011 - Echvi_1315 0.84 +2.0 1,519,040 + Echvi_1315 0.86 +0.5 1,519,040 + +1.0 1,519,041 - Echvi_1315 0.86 -0.8 1,519,041 - Echvi_1315 0.86 +0.8 1,519,047 + Echvi_1315 0.86 -0.0 1,519,047 + Echvi_1315 0.86 -0.0 1,519,071 - Echvi_1315 0.88 +0.2 1,519,071 - Echvi_1315 0.88 -1.1 1,519,082 - Echvi_1315 0.89 +0.4 1,519,082 - Echvi_1315 0.89 +0.2 1,519,086 - Echvi_1315 0.89 -1.3 1,519,089 + Echvi_1315 0.89 +1.3 1,519,089 + Echvi_1315 0.89 +1.3 1,519,090 - Echvi_1315 0.89 +0.2 1,519,090 - Echvi_1315 0.89 +0.8 1,519,090 - Echvi_1315 0.89 +0.2 1,519,099 - +0.4 1,519,123 + +1.4 1,519,124 - +0.3 1,519,124 - +0.2 1,519,131 - +0.5 1,519,131 - +0.3 1,519,135 + -0.1 1,519,173 - +0.2 1,519,200 - +1.2 1,519,212 + +0.9 1,519,218 + -0.1 1,519,283 + +1.3 1,519,337 - -0.3 1,519,338 + +1.1 1,519,382 + +1.4 1,519,397 - +0.2 1,519,602 + +0.0 1,519,603 - -0.1 1,519,604 + +0.0 1,519,604 + -1.6 1,519,643 - +0.8 1,519,680 + -0.9 1,519,682 + -0.3 1,519,682 + +0.6 1,519,683 - -2.2 1,519,683 - +0.1 1,519,684 + +0.4 1,519,684 + -0.1 1,519,684 + -0.6 1,519,684 + -2.2 1,519,684 + +0.1 1,519,684 + -0.4 1,519,684 + +0.2 1,519,685 - +1.0 1,519,685 - -1.0 1,519,706 + +1.8 1,519,706 + -1.7 1,519,706 + +1.3 1,519,707 - +0.2 1,519,710 + -0.4 1,519,710 + +0.1 1,519,711 - +0.2 1,519,717 + +0.1 1,519,717 + +1.2 1,519,717 + -1.2 1,519,717 + -0.1 1,519,717 + +0.3 1,519,718 - +0.4 1,519,718 - -0.0 1,519,718 - -0.2 1,519,718 - +0.1 1,519,718 - +1.0 1,519,718 - +0.3 1,519,772 + +0.6 1,519,786 - +0.2 1,519,797 + +0.9 1,519,797 + -0.7 1,519,797 + -1.7 1,519,797 + +0.3 1,519,798 - -1.7 1,519,798 - -0.7 1,519,798 - +0.3 1,519,832 + -0.5 1,519,841 + +0.6 1,519,842 - -0.2 1,519,906 - Echvi_1316 0.13 +1.2 1,520,007 - Echvi_1316 0.20 +0.8 1,520,115 + Echvi_1316 0.28 -1.0 1,520,115 + Echvi_1316 0.28 +0.6 1,520,129 + Echvi_1316 0.29 +0.1 1,520,129 + Echvi_1316 0.29 -0.4 1,520,129 + Echvi_1316 0.29 -0.3 1,520,130 - Echvi_1316 0.29 +0.5 1,520,130 - Echvi_1316 0.29 +0.4 1,520,131 + Echvi_1316 0.29 +1.7 1,520,137 - Echvi_1316 0.29 +1.0 1,520,193 - Echvi_1316 0.33 +0.8
Or see this region's nucleotide sequence