Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21630

Experiment: m.b. nitrite 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_21625 and CA264_21630 are separated by 10 nucleotidesCA264_21630 and CA264_21635 are separated by 2 nucleotides CA264_21625: CA264_21625 - hypothetical protein, at 192,585 to 194,210 _21625 CA264_21630: CA264_21630 - hypothetical protein, at 194,221 to 194,553 _21630 CA264_21635: CA264_21635 - hypothetical protein, at 194,556 to 196,211 _21635 Position (kb) 194 195Strain fitness (log2 ratio) -2 -1 0 1at 193.456 kb on + strand, within CA264_21625at 193.456 kb on + strand, within CA264_21625at 193.457 kb on - strand, within CA264_21625at 193.464 kb on + strand, within CA264_21625at 193.498 kb on + strand, within CA264_21625at 193.498 kb on + strand, within CA264_21625at 193.499 kb on - strand, within CA264_21625at 193.499 kb on - strand, within CA264_21625at 193.580 kb on - strand, within CA264_21625at 193.580 kb on - strand, within CA264_21625at 193.580 kb on - strand, within CA264_21625at 193.757 kb on - strand, within CA264_21625at 193.831 kb on + strand, within CA264_21625at 193.831 kb on + strand, within CA264_21625at 193.832 kb on - strand, within CA264_21625at 193.843 kb on + strand, within CA264_21625at 193.844 kb on - strand, within CA264_21625at 193.844 kb on - strand, within CA264_21625at 193.846 kb on + strand, within CA264_21625at 193.846 kb on + strand, within CA264_21625at 193.847 kb on - strand, within CA264_21625at 193.847 kb on - strand, within CA264_21625at 193.899 kb on + strand, within CA264_21625at 193.902 kb on - strand, within CA264_21625at 194.020 kb on + strand, within CA264_21625at 194.020 kb on + strand, within CA264_21625at 194.073 kb on - strandat 194.081 kb on - strandat 194.142 kb on + strandat 194.148 kb on - strandat 194.173 kb on - strandat 194.173 kb on - strandat 194.191 kb on - strandat 194.191 kb on - strandat 194.192 kb on + strandat 194.192 kb on + strandat 194.193 kb on - strandat 194.193 kb on - strandat 194.198 kb on - strandat 194.211 kb on - strandat 194.211 kb on - strandat 194.266 kb on + strand, within CA264_21630at 194.266 kb on + strand, within CA264_21630at 194.276 kb on + strand, within CA264_21630at 194.407 kb on + strand, within CA264_21630at 194.441 kb on - strand, within CA264_21630at 194.451 kb on - strand, within CA264_21630at 194.451 kb on - strand, within CA264_21630at 194.451 kb on - strand, within CA264_21630at 194.545 kb on + strandat 194.545 kb on + strandat 194.545 kb on + strandat 194.547 kb on + strandat 194.548 kb on - strandat 194.653 kb on + strandat 194.653 kb on + strandat 194.654 kb on - strandat 194.654 kb on - strandat 194.741 kb on + strand, within CA264_21635at 194.741 kb on + strand, within CA264_21635at 194.742 kb on - strand, within CA264_21635at 194.743 kb on + strand, within CA264_21635at 194.792 kb on + strand, within CA264_21635at 194.808 kb on - strand, within CA264_21635at 194.808 kb on - strand, within CA264_21635at 194.827 kb on - strand, within CA264_21635at 194.841 kb on + strand, within CA264_21635at 194.979 kb on + strand, within CA264_21635at 194.979 kb on + strand, within CA264_21635at 194.992 kb on - strand, within CA264_21635at 195.181 kb on - strand, within CA264_21635at 195.308 kb on + strand, within CA264_21635at 195.349 kb on - strand, within CA264_21635at 195.417 kb on + strand, within CA264_21635at 195.418 kb on - strand, within CA264_21635

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
remove
193,456 + CA264_21625 0.54 -0.3
193,456 + CA264_21625 0.54 +1.2
193,457 - CA264_21625 0.54 -0.2
193,464 + CA264_21625 0.54 -1.0
193,498 + CA264_21625 0.56 +0.1
193,498 + CA264_21625 0.56 -0.8
193,499 - CA264_21625 0.56 +0.7
193,499 - CA264_21625 0.56 -0.2
193,580 - CA264_21625 0.61 -0.5
193,580 - CA264_21625 0.61 -0.3
193,580 - CA264_21625 0.61 -0.1
193,757 - CA264_21625 0.72 -0.0
193,831 + CA264_21625 0.77 -0.4
193,831 + CA264_21625 0.77 -0.6
193,832 - CA264_21625 0.77 +0.7
193,843 + CA264_21625 0.77 -0.1
193,844 - CA264_21625 0.77 -0.3
193,844 - CA264_21625 0.77 -0.3
193,846 + CA264_21625 0.78 -0.5
193,846 + CA264_21625 0.78 +0.1
193,847 - CA264_21625 0.78 +0.7
193,847 - CA264_21625 0.78 -1.1
193,899 + CA264_21625 0.81 -1.1
193,902 - CA264_21625 0.81 -0.4
194,020 + CA264_21625 0.88 +0.5
194,020 + CA264_21625 0.88 +0.2
194,073 - -0.5
194,081 - -0.6
194,142 + +0.1
194,148 - +0.0
194,173 - -0.8
194,173 - -0.1
194,191 - -0.3
194,191 - +0.1
194,192 + +0.6
194,192 + +0.1
194,193 - -0.4
194,193 - -0.8
194,198 - +0.5
194,211 - -0.6
194,211 - -2.1
194,266 + CA264_21630 0.14 -0.8
194,266 + CA264_21630 0.14 -0.9
194,276 + CA264_21630 0.17 -0.5
194,407 + CA264_21630 0.56 -0.1
194,441 - CA264_21630 0.66 -0.3
194,451 - CA264_21630 0.69 -0.3
194,451 - CA264_21630 0.69 +0.4
194,451 - CA264_21630 0.69 -0.7
194,545 + -0.2
194,545 + +0.2
194,545 + -0.4
194,547 + +1.2
194,548 - -0.4
194,653 + +0.4
194,653 + -0.3
194,654 - +1.1
194,654 - +0.9
194,741 + CA264_21635 0.11 -0.0
194,741 + CA264_21635 0.11 -0.3
194,742 - CA264_21635 0.11 -0.3
194,743 + CA264_21635 0.11 -0.3
194,792 + CA264_21635 0.14 +0.8
194,808 - CA264_21635 0.15 +0.4
194,808 - CA264_21635 0.15 +0.2
194,827 - CA264_21635 0.16 -0.2
194,841 + CA264_21635 0.17 -0.8
194,979 + CA264_21635 0.26 -0.5
194,979 + CA264_21635 0.26 +0.3
194,992 - CA264_21635 0.26 -0.8
195,181 - CA264_21635 0.38 -0.2
195,308 + CA264_21635 0.45 +0.5
195,349 - CA264_21635 0.48 -0.8
195,417 + CA264_21635 0.52 +1.2
195,418 - CA264_21635 0.52 -1.2

Or see this region's nucleotide sequence