Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21625

Experiment: m.b. nitrite 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21620 and CA264_21625 overlap by 4 nucleotidesCA264_21625 and CA264_21630 are separated by 10 nucleotidesCA264_21630 and CA264_21635 are separated by 2 nucleotides CA264_21620: CA264_21620 - hypothetical protein, at 191,344 to 192,588 _21620 CA264_21625: CA264_21625 - hypothetical protein, at 192,585 to 194,210 _21625 CA264_21630: CA264_21630 - hypothetical protein, at 194,221 to 194,553 _21630 CA264_21635: CA264_21635 - hypothetical protein, at 194,556 to 196,211 _21635 Position (kb) 192 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 191.662 kb on - strand, within CA264_21620at 191.662 kb on - strand, within CA264_21620at 191.683 kb on + strand, within CA264_21620at 191.795 kb on - strand, within CA264_21620at 191.813 kb on + strand, within CA264_21620at 191.814 kb on - strand, within CA264_21620at 191.814 kb on - strand, within CA264_21620at 191.870 kb on + strand, within CA264_21620at 191.870 kb on + strand, within CA264_21620at 191.874 kb on + strand, within CA264_21620at 191.940 kb on + strand, within CA264_21620at 191.942 kb on + strand, within CA264_21620at 191.943 kb on - strand, within CA264_21620at 192.152 kb on - strand, within CA264_21620at 192.188 kb on + strand, within CA264_21620at 192.188 kb on + strand, within CA264_21620at 192.188 kb on + strand, within CA264_21620at 192.189 kb on - strand, within CA264_21620at 192.230 kb on - strand, within CA264_21620at 192.284 kb on + strand, within CA264_21620at 192.315 kb on + strand, within CA264_21620at 192.318 kb on + strand, within CA264_21620at 192.364 kb on + strand, within CA264_21620at 192.405 kb on - strand, within CA264_21620at 192.406 kb on + strand, within CA264_21620at 192.407 kb on - strand, within CA264_21620at 192.467 kb on + strandat 192.467 kb on + strandat 192.467 kb on + strandat 192.467 kb on + strandat 192.467 kb on + strandat 192.467 kb on + strandat 192.468 kb on - strandat 192.468 kb on - strandat 192.479 kb on - strandat 192.565 kb on + strandat 192.565 kb on + strandat 192.565 kb on + strandat 192.566 kb on - strandat 192.566 kb on - strandat 192.567 kb on + strandat 192.567 kb on + strandat 192.567 kb on + strandat 192.568 kb on - strandat 192.568 kb on - strandat 192.568 kb on - strandat 192.568 kb on - strandat 192.569 kb on + strandat 192.569 kb on + strandat 192.569 kb on + strandat 192.569 kb on + strandat 192.569 kb on + strandat 192.569 kb on + strandat 192.569 kb on + strandat 192.570 kb on - strandat 192.570 kb on - strandat 192.570 kb on - strandat 192.570 kb on - strandat 192.570 kb on - strandat 192.570 kb on - strandat 192.571 kb on + strandat 192.571 kb on + strandat 192.571 kb on + strandat 192.572 kb on - strandat 192.572 kb on - strandat 192.588 kb on + strandat 192.734 kb on + strandat 192.735 kb on - strandat 192.735 kb on - strandat 192.736 kb on + strandat 192.736 kb on + strandat 192.736 kb on + strandat 192.776 kb on + strand, within CA264_21625at 192.777 kb on - strand, within CA264_21625at 192.777 kb on - strand, within CA264_21625at 192.780 kb on + strand, within CA264_21625at 192.780 kb on + strand, within CA264_21625at 192.781 kb on - strand, within CA264_21625at 192.839 kb on + strand, within CA264_21625at 192.840 kb on - strand, within CA264_21625at 192.896 kb on - strand, within CA264_21625at 193.002 kb on + strand, within CA264_21625at 193.002 kb on + strand, within CA264_21625at 193.002 kb on + strand, within CA264_21625at 193.003 kb on - strand, within CA264_21625at 193.135 kb on + strand, within CA264_21625at 193.136 kb on - strand, within CA264_21625at 193.152 kb on + strand, within CA264_21625at 193.154 kb on + strand, within CA264_21625at 193.155 kb on - strand, within CA264_21625at 193.218 kb on - strand, within CA264_21625at 193.219 kb on + strand, within CA264_21625at 193.219 kb on + strand, within CA264_21625at 193.219 kb on + strand, within CA264_21625at 193.219 kb on + strand, within CA264_21625at 193.220 kb on - strand, within CA264_21625at 193.220 kb on - strand, within CA264_21625at 193.220 kb on - strand, within CA264_21625at 193.456 kb on + strand, within CA264_21625at 193.456 kb on + strand, within CA264_21625at 193.457 kb on - strand, within CA264_21625at 193.464 kb on + strand, within CA264_21625at 193.498 kb on + strand, within CA264_21625at 193.498 kb on + strand, within CA264_21625at 193.499 kb on - strand, within CA264_21625at 193.499 kb on - strand, within CA264_21625at 193.580 kb on - strand, within CA264_21625at 193.580 kb on - strand, within CA264_21625at 193.580 kb on - strand, within CA264_21625at 193.757 kb on - strand, within CA264_21625at 193.831 kb on + strand, within CA264_21625at 193.831 kb on + strand, within CA264_21625at 193.832 kb on - strand, within CA264_21625at 193.843 kb on + strand, within CA264_21625at 193.844 kb on - strand, within CA264_21625at 193.844 kb on - strand, within CA264_21625at 193.846 kb on + strand, within CA264_21625at 193.846 kb on + strand, within CA264_21625at 193.847 kb on - strand, within CA264_21625at 193.847 kb on - strand, within CA264_21625at 193.899 kb on + strand, within CA264_21625at 193.902 kb on - strand, within CA264_21625at 194.020 kb on + strand, within CA264_21625at 194.020 kb on + strand, within CA264_21625at 194.073 kb on - strandat 194.081 kb on - strandat 194.142 kb on + strandat 194.148 kb on - strandat 194.173 kb on - strandat 194.173 kb on - strandat 194.191 kb on - strandat 194.191 kb on - strandat 194.192 kb on + strandat 194.192 kb on + strandat 194.193 kb on - strandat 194.193 kb on - strandat 194.198 kb on - strandat 194.211 kb on - strandat 194.211 kb on - strandat 194.266 kb on + strand, within CA264_21630at 194.266 kb on + strand, within CA264_21630at 194.276 kb on + strand, within CA264_21630at 194.407 kb on + strand, within CA264_21630at 194.441 kb on - strand, within CA264_21630at 194.451 kb on - strand, within CA264_21630at 194.451 kb on - strand, within CA264_21630at 194.451 kb on - strand, within CA264_21630at 194.545 kb on + strandat 194.545 kb on + strandat 194.545 kb on + strandat 194.547 kb on + strandat 194.548 kb on - strandat 194.653 kb on + strandat 194.653 kb on + strandat 194.654 kb on - strandat 194.654 kb on - strandat 194.741 kb on + strand, within CA264_21635at 194.741 kb on + strand, within CA264_21635at 194.742 kb on - strand, within CA264_21635at 194.743 kb on + strand, within CA264_21635at 194.792 kb on + strand, within CA264_21635at 194.808 kb on - strand, within CA264_21635at 194.808 kb on - strand, within CA264_21635at 194.827 kb on - strand, within CA264_21635at 194.841 kb on + strand, within CA264_21635at 194.979 kb on + strand, within CA264_21635at 194.979 kb on + strand, within CA264_21635at 194.992 kb on - strand, within CA264_21635at 195.181 kb on - strand, within CA264_21635

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
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191,662 - CA264_21620 0.26 -0.9
191,662 - CA264_21620 0.26 -0.0
191,683 + CA264_21620 0.27 -0.7
191,795 - CA264_21620 0.36 -0.6
191,813 + CA264_21620 0.38 -1.2
191,814 - CA264_21620 0.38 +1.2
191,814 - CA264_21620 0.38 -0.2
191,870 + CA264_21620 0.42 +0.6
191,870 + CA264_21620 0.42 -0.7
191,874 + CA264_21620 0.43 -0.8
191,940 + CA264_21620 0.48 -0.2
191,942 + CA264_21620 0.48 -0.3
191,943 - CA264_21620 0.48 +0.7
192,152 - CA264_21620 0.65 -0.2
192,188 + CA264_21620 0.68 +0.2
192,188 + CA264_21620 0.68 -0.2
192,188 + CA264_21620 0.68 -0.1
192,189 - CA264_21620 0.68 -0.2
192,230 - CA264_21620 0.71 +0.4
192,284 + CA264_21620 0.76 -0.3
192,315 + CA264_21620 0.78 +1.1
192,318 + CA264_21620 0.78 +0.3
192,364 + CA264_21620 0.82 -1.3
192,405 - CA264_21620 0.85 -0.5
192,406 + CA264_21620 0.85 -0.3
192,407 - CA264_21620 0.85 -0.1
192,467 + +0.9
192,467 + +1.2
192,467 + -0.3
192,467 + -0.4
192,467 + +0.1
192,467 + -0.2
192,468 - -0.2
192,468 - -0.5
192,479 - -0.0
192,565 + +0.2
192,565 + -0.0
192,565 + +1.8
192,566 - -0.0
192,566 - -0.6
192,567 + +0.4
192,567 + -0.1
192,567 + -0.8
192,568 - -0.0
192,568 - +2.2
192,568 - -0.0
192,568 - +1.0
192,569 + -0.1
192,569 + -0.8
192,569 + -0.4
192,569 + -0.2
192,569 + +0.5
192,569 + -0.9
192,569 + -0.5
192,570 - -0.3
192,570 - +0.7
192,570 - -1.0
192,570 - -0.8
192,570 - -0.1
192,570 - -0.2
192,571 + -1.7
192,571 + +0.9
192,571 + +0.2
192,572 - -0.2
192,572 - -0.3
192,588 + -1.0
192,734 + +0.4
192,735 - +0.2
192,735 - +0.2
192,736 + +0.2
192,736 + -0.6
192,736 + -0.9
192,776 + CA264_21625 0.12 +0.0
192,777 - CA264_21625 0.12 -0.3
192,777 - CA264_21625 0.12 -0.2
192,780 + CA264_21625 0.12 -0.6
192,780 + CA264_21625 0.12 +0.3
192,781 - CA264_21625 0.12 -0.5
192,839 + CA264_21625 0.16 +0.1
192,840 - CA264_21625 0.16 -0.2
192,896 - CA264_21625 0.19 -1.1
193,002 + CA264_21625 0.26 -0.5
193,002 + CA264_21625 0.26 -0.6
193,002 + CA264_21625 0.26 -1.0
193,003 - CA264_21625 0.26 -0.2
193,135 + CA264_21625 0.34 +0.1
193,136 - CA264_21625 0.34 -0.5
193,152 + CA264_21625 0.35 -0.8
193,154 + CA264_21625 0.35 -0.2
193,155 - CA264_21625 0.35 -0.8
193,218 - CA264_21625 0.39 -1.2
193,219 + CA264_21625 0.39 -0.2
193,219 + CA264_21625 0.39 +1.5
193,219 + CA264_21625 0.39 -0.3
193,219 + CA264_21625 0.39 +0.2
193,220 - CA264_21625 0.39 +0.0
193,220 - CA264_21625 0.39 -0.6
193,220 - CA264_21625 0.39 +0.1
193,456 + CA264_21625 0.54 -0.3
193,456 + CA264_21625 0.54 +1.2
193,457 - CA264_21625 0.54 -0.2
193,464 + CA264_21625 0.54 -1.0
193,498 + CA264_21625 0.56 +0.1
193,498 + CA264_21625 0.56 -0.8
193,499 - CA264_21625 0.56 +0.7
193,499 - CA264_21625 0.56 -0.2
193,580 - CA264_21625 0.61 -0.5
193,580 - CA264_21625 0.61 -0.3
193,580 - CA264_21625 0.61 -0.1
193,757 - CA264_21625 0.72 -0.0
193,831 + CA264_21625 0.77 -0.4
193,831 + CA264_21625 0.77 -0.6
193,832 - CA264_21625 0.77 +0.7
193,843 + CA264_21625 0.77 -0.1
193,844 - CA264_21625 0.77 -0.3
193,844 - CA264_21625 0.77 -0.3
193,846 + CA264_21625 0.78 -0.5
193,846 + CA264_21625 0.78 +0.1
193,847 - CA264_21625 0.78 +0.7
193,847 - CA264_21625 0.78 -1.1
193,899 + CA264_21625 0.81 -1.1
193,902 - CA264_21625 0.81 -0.4
194,020 + CA264_21625 0.88 +0.5
194,020 + CA264_21625 0.88 +0.2
194,073 - -0.5
194,081 - -0.6
194,142 + +0.1
194,148 - +0.0
194,173 - -0.8
194,173 - -0.1
194,191 - -0.3
194,191 - +0.1
194,192 + +0.6
194,192 + +0.1
194,193 - -0.4
194,193 - -0.8
194,198 - +0.5
194,211 - -0.6
194,211 - -2.1
194,266 + CA264_21630 0.14 -0.8
194,266 + CA264_21630 0.14 -0.9
194,276 + CA264_21630 0.17 -0.5
194,407 + CA264_21630 0.56 -0.1
194,441 - CA264_21630 0.66 -0.3
194,451 - CA264_21630 0.69 -0.3
194,451 - CA264_21630 0.69 +0.4
194,451 - CA264_21630 0.69 -0.7
194,545 + -0.2
194,545 + +0.2
194,545 + -0.4
194,547 + +1.2
194,548 - -0.4
194,653 + +0.4
194,653 + -0.3
194,654 - +1.1
194,654 - +0.9
194,741 + CA264_21635 0.11 -0.0
194,741 + CA264_21635 0.11 -0.3
194,742 - CA264_21635 0.11 -0.3
194,743 + CA264_21635 0.11 -0.3
194,792 + CA264_21635 0.14 +0.8
194,808 - CA264_21635 0.15 +0.4
194,808 - CA264_21635 0.15 +0.2
194,827 - CA264_21635 0.16 -0.2
194,841 + CA264_21635 0.17 -0.8
194,979 + CA264_21635 0.26 -0.5
194,979 + CA264_21635 0.26 +0.3
194,992 - CA264_21635 0.26 -0.8
195,181 - CA264_21635 0.38 -0.2

Or see this region's nucleotide sequence