Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19605 and CA264_19610 are separated by 36 nucleotides CA264_19610 and CA264_19615 are separated by 193 nucleotides CA264_19615 and CA264_19620 are separated by 112 nucleotides CA264_19620 and CA264_19625 are separated by 19 nucleotides
CA264_19605: CA264_19605 - RNA polymerase, at 4,530,161 to 4,530,718
_19605
CA264_19610: CA264_19610 - hypothetical protein, at 4,530,755 to 4,531,387
_19610
CA264_19615: CA264_19615 - hypothetical protein, at 4,531,581 to 4,532,540
_19615
CA264_19620: CA264_19620 - 2-aminomuconate deaminase, at 4,532,653 to 4,533,081
_19620
CA264_19625: CA264_19625 - DNA mismatch repair protein MutS, at 4,533,101 to 4,534,915
_19625
Position (kb) 4531
4532
4533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4530.584 kb on + strand, within CA264_19605 at 4530.584 kb on + strand, within CA264_19605 at 4530.729 kb on + strand at 4530.736 kb on + strand at 4530.745 kb on + strand at 4530.745 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.749 kb on - strand at 4530.859 kb on + strand, within CA264_19610 at 4531.336 kb on - strand at 4531.348 kb on + strand at 4531.349 kb on - strand at 4531.349 kb on - strand at 4531.352 kb on - strand at 4531.360 kb on + strand at 4531.360 kb on + strand at 4531.591 kb on + strand at 4531.591 kb on + strand at 4531.831 kb on + strand, within CA264_19615 at 4531.944 kb on + strand, within CA264_19615 at 4531.954 kb on - strand, within CA264_19615 at 4532.005 kb on - strand, within CA264_19615 at 4532.124 kb on + strand, within CA264_19615 at 4532.259 kb on + strand, within CA264_19615 at 4532.374 kb on + strand, within CA264_19615 at 4532.442 kb on + strand, within CA264_19615 at 4532.444 kb on + strand, within CA264_19615 at 4532.531 kb on + strand at 4532.552 kb on + strand at 4532.559 kb on - strand at 4532.643 kb on - strand at 4532.672 kb on + strand at 4532.828 kb on - strand, within CA264_19620 at 4532.920 kb on - strand, within CA264_19620 at 4532.959 kb on + strand, within CA264_19620 at 4532.972 kb on - strand, within CA264_19620 at 4532.980 kb on + strand, within CA264_19620 at 4533.014 kb on + strand, within CA264_19620 at 4533.014 kb on + strand, within CA264_19620 at 4533.020 kb on + strand, within CA264_19620 at 4533.080 kb on - strand at 4533.080 kb on - strand at 4533.085 kb on - strand at 4533.096 kb on - strand at 4533.124 kb on - strand at 4533.236 kb on + strand at 4533.239 kb on + strand at 4533.340 kb on + strand, within CA264_19625 at 4533.345 kb on - strand, within CA264_19625 at 4533.396 kb on + strand, within CA264_19625 at 4533.439 kb on - strand, within CA264_19625 at 4533.472 kb on + strand, within CA264_19625 at 4533.540 kb on + strand, within CA264_19625
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 4,530,584 + CA264_19605 0.76 +0.2 4,530,584 + CA264_19605 0.76 -0.5 4,530,729 + -0.9 4,530,736 + -1.5 4,530,745 + -1.9 4,530,745 + -1.9 4,530,748 + -0.1 4,530,748 + -0.4 4,530,748 + -0.3 4,530,748 + -1.1 4,530,748 + -1.4 4,530,749 - +0.7 4,530,859 + CA264_19610 0.16 -0.6 4,531,336 - -0.2 4,531,348 + +1.6 4,531,349 - -0.9 4,531,349 - -0.6 4,531,352 - -1.4 4,531,360 + -0.1 4,531,360 + -0.7 4,531,591 + -1.5 4,531,591 + -0.9 4,531,831 + CA264_19615 0.26 -1.2 4,531,944 + CA264_19615 0.38 +0.5 4,531,954 - CA264_19615 0.39 -0.3 4,532,005 - CA264_19615 0.44 -1.0 4,532,124 + CA264_19615 0.57 -1.4 4,532,259 + CA264_19615 0.71 -2.1 4,532,374 + CA264_19615 0.83 -1.7 4,532,442 + CA264_19615 0.90 -0.9 4,532,444 + CA264_19615 0.90 -2.2 4,532,531 + -0.9 4,532,552 + -0.5 4,532,559 - -0.5 4,532,643 - +0.3 4,532,672 + +0.0 4,532,828 - CA264_19620 0.41 -0.4 4,532,920 - CA264_19620 0.62 +1.9 4,532,959 + CA264_19620 0.71 -0.1 4,532,972 - CA264_19620 0.74 +1.3 4,532,980 + CA264_19620 0.76 -0.3 4,533,014 + CA264_19620 0.84 -0.4 4,533,014 + CA264_19620 0.84 +1.2 4,533,020 + CA264_19620 0.86 +0.0 4,533,080 - +0.7 4,533,080 - -1.4 4,533,085 - +0.9 4,533,096 - +0.4 4,533,124 - +0.3 4,533,236 + +0.2 4,533,239 + -0.2 4,533,340 + CA264_19625 0.13 -0.1 4,533,345 - CA264_19625 0.13 -0.1 4,533,396 + CA264_19625 0.16 +0.3 4,533,439 - CA264_19625 0.19 -0.4 4,533,472 + CA264_19625 0.20 +0.1 4,533,540 + CA264_19625 0.24 -0.6
Or see this region's nucleotide sequence