Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03370 and CA264_03375 are separated by 149 nucleotides CA264_03375 and CA264_03380 are separated by 137 nucleotides CA264_03380 and CA264_03385 are separated by 215 nucleotides CA264_03385 and CA264_03390 are separated by 247 nucleotides
CA264_03370: CA264_03370 - hypothetical protein, at 789,240 to 789,671
_03370
CA264_03375: CA264_03375 - hypothetical protein, at 789,821 to 790,390
_03375
CA264_03380: CA264_03380 - hypothetical protein, at 790,528 to 791,238
_03380
CA264_03385: CA264_03385 - hypothetical protein, at 791,454 to 791,675
_03385
CA264_03390: CA264_03390 - hypothetical protein, at 791,923 to 792,291
_03390
Position (kb) 790
791
792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 789.583 kb on + strand, within CA264_03370 at 789.583 kb on + strand, within CA264_03370 at 789.588 kb on + strand, within CA264_03370 at 789.589 kb on - strand, within CA264_03370 at 789.589 kb on - strand, within CA264_03370 at 789.671 kb on + strand at 789.684 kb on + strand at 789.685 kb on - strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.719 kb on - strand at 789.753 kb on - strand at 789.769 kb on + strand at 789.770 kb on - strand at 789.809 kb on + strand at 789.809 kb on + strand at 789.809 kb on + strand at 789.810 kb on - strand at 789.811 kb on + strand at 789.892 kb on + strand, within CA264_03375 at 789.893 kb on - strand, within CA264_03375 at 789.907 kb on - strand, within CA264_03375 at 789.907 kb on - strand, within CA264_03375 at 789.912 kb on - strand, within CA264_03375 at 789.913 kb on + strand, within CA264_03375 at 789.972 kb on + strand, within CA264_03375 at 789.973 kb on - strand, within CA264_03375 at 789.973 kb on - strand, within CA264_03375 at 789.996 kb on + strand, within CA264_03375 at 789.997 kb on - strand, within CA264_03375 at 790.213 kb on + strand, within CA264_03375 at 790.214 kb on - strand, within CA264_03375 at 790.240 kb on + strand, within CA264_03375 at 790.271 kb on - strand, within CA264_03375 at 790.271 kb on - strand, within CA264_03375 at 790.300 kb on - strand, within CA264_03375 at 790.362 kb on + strand at 790.490 kb on - strand at 790.513 kb on + strand at 790.514 kb on - strand at 790.517 kb on + strand at 790.518 kb on - strand at 790.527 kb on + strand at 790.527 kb on + strand at 790.630 kb on + strand, within CA264_03380 at 790.630 kb on + strand, within CA264_03380 at 790.648 kb on + strand, within CA264_03380 at 790.810 kb on + strand, within CA264_03380 at 790.811 kb on - strand, within CA264_03380 at 790.966 kb on + strand, within CA264_03380 at 790.966 kb on + strand, within CA264_03380 at 790.967 kb on - strand, within CA264_03380 at 791.002 kb on + strand, within CA264_03380 at 791.005 kb on + strand, within CA264_03380 at 791.006 kb on - strand, within CA264_03380 at 791.083 kb on + strand, within CA264_03380 at 791.084 kb on - strand, within CA264_03380 at 791.162 kb on - strand, within CA264_03380 at 791.303 kb on + strand at 791.310 kb on + strand at 791.311 kb on - strand at 791.378 kb on - strand at 791.413 kb on + strand at 791.439 kb on + strand at 791.439 kb on + strand at 791.444 kb on + strand at 791.613 kb on + strand, within CA264_03385 at 791.614 kb on - strand, within CA264_03385 at 791.618 kb on + strand, within CA264_03385 at 791.619 kb on - strand, within CA264_03385 at 791.675 kb on + strand at 791.691 kb on + strand at 791.714 kb on + strand at 791.714 kb on + strand at 791.715 kb on - strand at 791.813 kb on + strand at 791.858 kb on + strand at 791.859 kb on - strand at 791.869 kb on + strand at 791.875 kb on + strand at 791.876 kb on - strand at 791.922 kb on + strand at 791.965 kb on - strand, within CA264_03390 at 792.031 kb on - strand, within CA264_03390 at 792.203 kb on - strand, within CA264_03390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 789,583 + CA264_03370 0.79 -0.1 789,583 + CA264_03370 0.79 +0.1 789,588 + CA264_03370 0.81 +0.5 789,589 - CA264_03370 0.81 -0.4 789,589 - CA264_03370 0.81 +0.7 789,671 + +0.4 789,684 + -0.1 789,685 - -0.4 789,688 + +1.3 789,688 + +0.6 789,688 + -0.6 789,688 + -1.0 789,688 + -0.1 789,688 + +1.4 789,689 - +1.3 789,689 - -0.2 789,689 - +0.6 789,689 - +1.1 789,689 - +0.3 789,689 - +0.5 789,689 - -1.0 789,719 - +1.4 789,753 - -1.0 789,769 + -0.4 789,770 - -1.2 789,809 + -0.4 789,809 + -0.1 789,809 + -1.1 789,810 - -0.6 789,811 + -0.4 789,892 + CA264_03375 0.12 -0.5 789,893 - CA264_03375 0.13 -1.5 789,907 - CA264_03375 0.15 -0.3 789,907 - CA264_03375 0.15 -1.1 789,912 - CA264_03375 0.16 -1.5 789,913 + CA264_03375 0.16 +0.2 789,972 + CA264_03375 0.26 -1.6 789,973 - CA264_03375 0.27 -0.4 789,973 - CA264_03375 0.27 -0.9 789,996 + CA264_03375 0.31 -0.0 789,997 - CA264_03375 0.31 -0.6 790,213 + CA264_03375 0.69 -0.2 790,214 - CA264_03375 0.69 +2.6 790,240 + CA264_03375 0.74 -0.4 790,271 - CA264_03375 0.79 -0.6 790,271 - CA264_03375 0.79 -0.1 790,300 - CA264_03375 0.84 +1.8 790,362 + -0.6 790,490 - -0.2 790,513 + -0.0 790,514 - +0.8 790,517 + -0.5 790,518 - -0.9 790,527 + +0.0 790,527 + -0.2 790,630 + CA264_03380 0.14 -0.3 790,630 + CA264_03380 0.14 +1.0 790,648 + CA264_03380 0.17 +0.4 790,810 + CA264_03380 0.40 -0.9 790,811 - CA264_03380 0.40 +1.2 790,966 + CA264_03380 0.62 -1.9 790,966 + CA264_03380 0.62 +0.3 790,967 - CA264_03380 0.62 +0.3 791,002 + CA264_03380 0.67 -0.2 791,005 + CA264_03380 0.67 +0.9 791,006 - CA264_03380 0.67 +0.1 791,083 + CA264_03380 0.78 -0.2 791,084 - CA264_03380 0.78 +0.3 791,162 - CA264_03380 0.89 -0.3 791,303 + +0.4 791,310 + +0.4 791,311 - +0.1 791,378 - -0.1 791,413 + -2.4 791,439 + -0.2 791,439 + -0.3 791,444 + -1.2 791,613 + CA264_03385 0.72 -0.1 791,614 - CA264_03385 0.72 -0.3 791,618 + CA264_03385 0.74 +2.7 791,619 - CA264_03385 0.74 +0.2 791,675 + -0.0 791,691 + +0.6 791,714 + +0.1 791,714 + -0.2 791,715 - +1.4 791,813 + +0.4 791,858 + -1.0 791,859 - -0.2 791,869 + -0.1 791,875 + -0.2 791,876 - -0.8 791,922 + +0.8 791,965 - CA264_03390 0.11 +0.0 792,031 - CA264_03390 0.29 +0.2 792,203 - CA264_03390 0.76 +0.3
Or see this region's nucleotide sequence