Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02675 and CA264_02680 are separated by 190 nucleotides CA264_02680 and CA264_02685 overlap by 11 nucleotides CA264_02685 and CA264_02690 are separated by 71 nucleotides
CA264_02675: CA264_02675 - succinate-semialdehyde dehydrogenase, at 618,860 to 620,224
_02675
CA264_02680: CA264_02680 - RNA polymerase subunit sigma-70, at 620,415 to 620,972
_02680
CA264_02685: CA264_02685 - hypothetical protein, at 620,962 to 621,777
_02685
CA264_02690: CA264_02690 - rhodanese, at 621,849 to 622,328
_02690
Position (kb) 620
621 Strain fitness (log2 ratio) -1
0
1
2 at 619.520 kb on - strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.854 kb on - strand, within CA264_02675 at 619.945 kb on - strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.075 kb on - strand, within CA264_02675 at 620.151 kb on - strand at 620.173 kb on + strand at 620.216 kb on + strand at 620.248 kb on + strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.252 kb on + strand at 620.268 kb on + strand at 620.268 kb on + strand at 620.270 kb on + strand at 620.271 kb on - strand at 620.339 kb on - strand at 620.346 kb on + strand at 620.347 kb on - strand at 620.353 kb on - strand at 620.353 kb on - strand at 620.359 kb on + strand at 620.360 kb on - strand at 620.511 kb on + strand, within CA264_02680 at 620.667 kb on - strand, within CA264_02680 at 620.765 kb on + strand, within CA264_02680 at 620.847 kb on + strand, within CA264_02680 at 620.886 kb on + strand, within CA264_02680 at 620.933 kb on + strand at 620.934 kb on - strand at 620.980 kb on + strand at 620.980 kb on + strand at 620.984 kb on + strand at 621.169 kb on - strand, within CA264_02685 at 621.180 kb on - strand, within CA264_02685 at 621.393 kb on + strand, within CA264_02685 at 621.394 kb on - strand, within CA264_02685 at 621.457 kb on + strand, within CA264_02685 at 621.457 kb on + strand, within CA264_02685 at 621.458 kb on - strand, within CA264_02685 at 621.459 kb on + strand, within CA264_02685 at 621.539 kb on + strand, within CA264_02685 at 621.540 kb on - strand, within CA264_02685 at 621.542 kb on - strand, within CA264_02685 at 621.635 kb on + strand, within CA264_02685 at 621.636 kb on - strand, within CA264_02685 at 621.636 kb on - strand, within CA264_02685 at 621.642 kb on - strand, within CA264_02685 at 621.751 kb on + strand at 621.751 kb on + strand at 621.832 kb on + strand at 621.836 kb on + strand at 621.859 kb on + strand at 621.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 619,520 - CA264_02675 0.48 +0.2 619,775 + CA264_02675 0.67 +0.1 619,775 + CA264_02675 0.67 -0.3 619,776 - CA264_02675 0.67 +0.2 619,776 - CA264_02675 0.67 -0.3 619,854 - CA264_02675 0.73 -0.9 619,945 - CA264_02675 0.79 -0.9 620,074 + CA264_02675 0.89 -1.2 620,074 + CA264_02675 0.89 -0.6 620,075 - CA264_02675 0.89 -0.2 620,151 - -1.0 620,173 + -0.3 620,216 + +0.3 620,248 + -0.3 620,249 - +0.6 620,249 - +0.0 620,249 - -0.2 620,249 - +0.4 620,249 - -0.2 620,252 + -0.3 620,268 + +1.9 620,268 + +0.0 620,270 + +0.0 620,271 - -0.4 620,339 - +2.4 620,346 + +0.4 620,347 - -0.0 620,353 - -1.5 620,353 - -0.2 620,359 + -0.1 620,360 - +0.4 620,511 + CA264_02680 0.17 -1.1 620,667 - CA264_02680 0.45 -0.0 620,765 + CA264_02680 0.63 +0.6 620,847 + CA264_02680 0.77 -0.6 620,886 + CA264_02680 0.84 -0.4 620,933 + -0.4 620,934 - +0.6 620,980 + +1.0 620,980 + +0.4 620,984 + -0.3 621,169 - CA264_02685 0.25 +0.1 621,180 - CA264_02685 0.27 +0.3 621,393 + CA264_02685 0.53 +0.6 621,394 - CA264_02685 0.53 +2.2 621,457 + CA264_02685 0.61 +0.6 621,457 + CA264_02685 0.61 +0.7 621,458 - CA264_02685 0.61 +1.2 621,459 + CA264_02685 0.61 +1.1 621,539 + CA264_02685 0.71 +0.3 621,540 - CA264_02685 0.71 -0.3 621,542 - CA264_02685 0.71 +1.6 621,635 + CA264_02685 0.82 +0.5 621,636 - CA264_02685 0.83 +0.4 621,636 - CA264_02685 0.83 +1.0 621,642 - CA264_02685 0.83 +0.3 621,751 + -0.8 621,751 + -0.1 621,832 + +1.0 621,836 + -1.4 621,859 + -0.8 621,892 - -0.2
Or see this region's nucleotide sequence