Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00820 and CA264_00825 are separated by 800 nucleotides CA264_00825 and CA264_00830 are separated by 252 nucleotides CA264_00830 and CA264_00835 are separated by 205 nucleotides
CA264_00820: CA264_00820 - saccharopine dehydrogenase, at 174,502 to 175,851
_00820
CA264_00825: CA264_00825 - methyltransferase, at 176,652 to 177,368
_00825
CA264_00830: CA264_00830 - ribonuclease HI, at 177,621 to 178,091
_00830
CA264_00835: CA264_00835 - hypothetical protein, at 178,297 to 178,857
_00835
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.722 kb on - strand at 175.758 kb on + strand at 175.762 kb on + strand at 175.775 kb on - strand at 175.775 kb on - strand at 175.775 kb on - strand at 175.810 kb on - strand at 175.836 kb on - strand at 175.856 kb on - strand at 175.856 kb on - strand at 175.907 kb on - strand at 175.915 kb on + strand at 175.916 kb on - strand at 175.916 kb on - strand at 175.943 kb on + strand at 175.944 kb on - strand at 175.955 kb on + strand at 175.978 kb on + strand at 176.033 kb on + strand at 176.033 kb on + strand at 176.121 kb on + strand at 176.122 kb on - strand at 176.122 kb on - strand at 176.123 kb on + strand at 176.123 kb on + strand at 176.123 kb on + strand at 176.123 kb on + strand at 176.124 kb on - strand at 176.124 kb on - strand at 176.141 kb on + strand at 176.142 kb on - strand at 176.142 kb on - strand at 176.180 kb on + strand at 176.186 kb on + strand at 176.186 kb on + strand at 176.186 kb on + strand at 176.186 kb on + strand at 176.190 kb on + strand at 176.257 kb on - strand at 176.257 kb on - strand at 176.264 kb on + strand at 176.265 kb on - strand at 176.277 kb on + strand at 176.280 kb on + strand at 176.281 kb on - strand at 176.284 kb on + strand at 176.284 kb on + strand at 176.284 kb on + strand at 176.285 kb on - strand at 176.285 kb on - strand at 176.285 kb on - strand at 176.285 kb on - strand at 176.289 kb on + strand at 176.289 kb on + strand at 176.290 kb on - strand at 176.290 kb on - strand at 176.290 kb on - strand at 176.291 kb on + strand at 176.291 kb on + strand at 176.292 kb on - strand at 176.292 kb on - strand at 176.292 kb on - strand at 176.292 kb on - strand at 176.311 kb on + strand at 176.370 kb on + strand at 176.429 kb on - strand at 176.429 kb on - strand at 176.437 kb on - strand at 176.437 kb on - strand at 176.492 kb on + strand at 176.522 kb on + strand at 176.525 kb on + strand at 176.525 kb on + strand at 176.525 kb on + strand at 176.526 kb on - strand at 176.529 kb on + strand at 176.530 kb on - strand at 176.633 kb on + strand at 176.665 kb on + strand at 176.666 kb on - strand at 176.666 kb on - strand at 176.666 kb on - strand at 176.666 kb on - strand at 176.668 kb on + strand at 176.699 kb on + strand at 176.699 kb on + strand at 176.700 kb on - strand at 176.701 kb on + strand at 176.701 kb on + strand at 176.702 kb on - strand at 176.729 kb on - strand, within CA264_00825 at 176.729 kb on - strand, within CA264_00825 at 176.729 kb on - strand, within CA264_00825 at 176.838 kb on + strand, within CA264_00825 at 176.899 kb on + strand, within CA264_00825 at 176.900 kb on - strand, within CA264_00825 at 176.901 kb on + strand, within CA264_00825 at 176.945 kb on + strand, within CA264_00825 at 176.946 kb on - strand, within CA264_00825 at 177.049 kb on + strand, within CA264_00825 at 177.180 kb on + strand, within CA264_00825 at 177.271 kb on - strand, within CA264_00825 at 177.274 kb on + strand, within CA264_00825 at 177.275 kb on - strand, within CA264_00825 at 177.320 kb on + strand at 177.320 kb on + strand at 177.356 kb on - strand at 177.491 kb on + strand at 177.491 kb on + strand at 177.537 kb on + strand at 177.538 kb on - strand at 177.538 kb on - strand at 177.559 kb on + strand at 177.593 kb on + strand at 177.594 kb on - strand at 177.622 kb on + strand at 177.641 kb on - strand at 178.081 kb on - strand at 178.081 kb on - strand at 178.123 kb on + strand at 178.161 kb on + strand at 178.162 kb on - strand at 178.170 kb on + strand at 178.170 kb on + strand at 178.170 kb on + strand at 178.170 kb on + strand at 178.171 kb on - strand at 178.177 kb on - strand at 178.198 kb on + strand at 178.199 kb on - strand at 178.215 kb on + strand at 178.259 kb on - strand at 178.291 kb on + strand at 178.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 175,722 - -0.5 175,758 + -0.1 175,762 + +0.5 175,775 - -0.3 175,775 - -0.0 175,775 - -0.0 175,810 - -1.7 175,836 - -1.7 175,856 - -0.7 175,856 - -0.1 175,907 - -2.4 175,915 + +1.0 175,916 - -0.3 175,916 - -0.8 175,943 + -0.7 175,944 - -0.8 175,955 + -0.4 175,978 + -0.5 176,033 + -0.2 176,033 + +1.2 176,121 + -0.2 176,122 - -0.7 176,122 - -1.6 176,123 + +0.9 176,123 + -0.8 176,123 + -0.4 176,123 + +0.4 176,124 - -0.9 176,124 - -0.4 176,141 + -1.3 176,142 - -0.7 176,142 - -0.6 176,180 + -0.4 176,186 + -0.2 176,186 + -0.5 176,186 + -0.4 176,186 + -0.2 176,190 + +0.2 176,257 - +0.0 176,257 - -0.2 176,264 + -0.1 176,265 - -0.4 176,277 + -1.7 176,280 + -0.1 176,281 - -0.0 176,284 + -0.1 176,284 + -0.1 176,284 + -0.3 176,285 - +0.2 176,285 - +0.1 176,285 - +0.2 176,285 - +0.4 176,289 + +1.4 176,289 + -1.3 176,290 - -2.5 176,290 - +0.4 176,290 - -1.7 176,291 + -0.0 176,291 + +1.2 176,292 - +0.1 176,292 - -0.2 176,292 - +0.4 176,292 - +0.0 176,311 + -0.1 176,370 + -0.4 176,429 - -0.4 176,429 - +0.5 176,437 - +0.6 176,437 - +0.4 176,492 + -0.6 176,522 + +0.3 176,525 + +0.5 176,525 + +0.4 176,525 + -1.1 176,526 - -0.4 176,529 + -0.6 176,530 - -0.3 176,633 + -0.3 176,665 + +0.2 176,666 - -0.6 176,666 - -0.7 176,666 - -0.1 176,666 - +0.4 176,668 + -0.5 176,699 + -1.0 176,699 + -0.4 176,700 - -0.5 176,701 + +0.5 176,701 + -3.1 176,702 - -0.1 176,729 - CA264_00825 0.11 +0.8 176,729 - CA264_00825 0.11 +1.6 176,729 - CA264_00825 0.11 +0.3 176,838 + CA264_00825 0.26 +2.7 176,899 + CA264_00825 0.34 +0.4 176,900 - CA264_00825 0.35 -0.2 176,901 + CA264_00825 0.35 -0.3 176,945 + CA264_00825 0.41 -0.4 176,946 - CA264_00825 0.41 -0.1 177,049 + CA264_00825 0.55 -0.4 177,180 + CA264_00825 0.74 +0.5 177,271 - CA264_00825 0.86 +0.2 177,274 + CA264_00825 0.87 -0.4 177,275 - CA264_00825 0.87 +0.6 177,320 + -0.2 177,320 + +0.6 177,356 - +0.0 177,491 + +0.1 177,491 + -0.6 177,537 + +0.1 177,538 - +0.6 177,538 - -0.1 177,559 + +0.1 177,593 + -0.6 177,594 - +1.4 177,622 + +1.2 177,641 - +1.1 178,081 - +0.4 178,081 - +2.1 178,123 + +0.5 178,161 + -0.5 178,162 - +1.1 178,170 + -0.9 178,170 + -0.1 178,170 + +0.6 178,170 + -0.2 178,171 - -0.3 178,177 - +0.1 178,198 + +0.4 178,199 - -0.4 178,215 + +0.1 178,259 - -0.0 178,291 + +0.2 178,301 - -0.1
Or see this region's nucleotide sequence