Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00810 and CA264_00815 are separated by 76 nucleotides CA264_00815 and CA264_00820 are separated by 129 nucleotides CA264_00820 and CA264_00825 are separated by 800 nucleotides
CA264_00810: CA264_00810 - phospholipase, at 173,154 to 173,813
_00810
CA264_00815: CA264_00815 - cytidine deaminase, at 173,890 to 174,372
_00815
CA264_00820: CA264_00820 - saccharopine dehydrogenase, at 174,502 to 175,851
_00820
CA264_00825: CA264_00825 - methyltransferase, at 176,652 to 177,368
_00825
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.523 kb on + strand, within CA264_00810 at 173.695 kb on + strand, within CA264_00810 at 173.770 kb on + strand at 173.773 kb on + strand at 173.783 kb on + strand at 173.830 kb on + strand at 173.881 kb on + strand at 173.881 kb on + strand at 173.891 kb on + strand at 173.940 kb on + strand, within CA264_00815 at 174.000 kb on + strand, within CA264_00815 at 174.009 kb on - strand, within CA264_00815 at 174.019 kb on + strand, within CA264_00815 at 174.020 kb on - strand, within CA264_00815 at 174.260 kb on + strand, within CA264_00815 at 174.346 kb on - strand at 174.446 kb on - strand at 174.478 kb on - strand at 174.501 kb on + strand at 174.557 kb on - strand at 174.557 kb on - strand at 174.590 kb on - strand at 174.805 kb on + strand, within CA264_00820 at 174.806 kb on - strand, within CA264_00820 at 174.806 kb on - strand, within CA264_00820 at 174.809 kb on + strand, within CA264_00820 at 174.927 kb on + strand, within CA264_00820 at 174.960 kb on + strand, within CA264_00820 at 175.015 kb on + strand, within CA264_00820 at 175.023 kb on + strand, within CA264_00820 at 175.023 kb on + strand, within CA264_00820 at 175.043 kb on + strand, within CA264_00820 at 175.072 kb on + strand, within CA264_00820 at 175.078 kb on - strand, within CA264_00820 at 175.078 kb on - strand, within CA264_00820 at 175.078 kb on - strand, within CA264_00820 at 175.090 kb on + strand, within CA264_00820 at 175.091 kb on - strand, within CA264_00820 at 175.091 kb on - strand, within CA264_00820 at 175.096 kb on + strand, within CA264_00820 at 175.096 kb on + strand, within CA264_00820 at 175.096 kb on + strand, within CA264_00820 at 175.096 kb on + strand, within CA264_00820 at 175.096 kb on + strand, within CA264_00820 at 175.097 kb on - strand, within CA264_00820 at 175.097 kb on - strand, within CA264_00820 at 175.097 kb on - strand, within CA264_00820 at 175.097 kb on - strand, within CA264_00820 at 175.097 kb on - strand, within CA264_00820 at 175.309 kb on + strand, within CA264_00820 at 175.309 kb on + strand, within CA264_00820 at 175.309 kb on + strand, within CA264_00820 at 175.310 kb on - strand, within CA264_00820 at 175.353 kb on - strand, within CA264_00820 at 175.407 kb on + strand, within CA264_00820 at 175.408 kb on - strand, within CA264_00820 at 175.415 kb on - strand, within CA264_00820 at 175.625 kb on + strand, within CA264_00820 at 175.626 kb on - strand, within CA264_00820 at 175.632 kb on + strand, within CA264_00820 at 175.632 kb on + strand, within CA264_00820 at 175.722 kb on - strand at 175.758 kb on + strand at 175.762 kb on + strand at 175.775 kb on - strand at 175.775 kb on - strand at 175.775 kb on - strand at 175.810 kb on - strand at 175.836 kb on - strand at 175.856 kb on - strand at 175.856 kb on - strand at 175.907 kb on - strand at 175.915 kb on + strand at 175.916 kb on - strand at 175.916 kb on - strand at 175.943 kb on + strand at 175.944 kb on - strand at 175.955 kb on + strand at 175.978 kb on + strand at 176.033 kb on + strand at 176.033 kb on + strand at 176.121 kb on + strand at 176.122 kb on - strand at 176.122 kb on - strand at 176.123 kb on + strand at 176.123 kb on + strand at 176.123 kb on + strand at 176.123 kb on + strand at 176.124 kb on - strand at 176.124 kb on - strand at 176.141 kb on + strand at 176.142 kb on - strand at 176.142 kb on - strand at 176.180 kb on + strand at 176.186 kb on + strand at 176.186 kb on + strand at 176.186 kb on + strand at 176.186 kb on + strand at 176.190 kb on + strand at 176.257 kb on - strand at 176.257 kb on - strand at 176.264 kb on + strand at 176.265 kb on - strand at 176.277 kb on + strand at 176.280 kb on + strand at 176.281 kb on - strand at 176.284 kb on + strand at 176.284 kb on + strand at 176.284 kb on + strand at 176.285 kb on - strand at 176.285 kb on - strand at 176.285 kb on - strand at 176.285 kb on - strand at 176.289 kb on + strand at 176.289 kb on + strand at 176.290 kb on - strand at 176.290 kb on - strand at 176.290 kb on - strand at 176.291 kb on + strand at 176.291 kb on + strand at 176.292 kb on - strand at 176.292 kb on - strand at 176.292 kb on - strand at 176.292 kb on - strand at 176.311 kb on + strand at 176.370 kb on + strand at 176.429 kb on - strand at 176.429 kb on - strand at 176.437 kb on - strand at 176.437 kb on - strand at 176.492 kb on + strand at 176.522 kb on + strand at 176.525 kb on + strand at 176.525 kb on + strand at 176.525 kb on + strand at 176.526 kb on - strand at 176.529 kb on + strand at 176.530 kb on - strand at 176.633 kb on + strand at 176.665 kb on + strand at 176.666 kb on - strand at 176.666 kb on - strand at 176.666 kb on - strand at 176.666 kb on - strand at 176.668 kb on + strand at 176.699 kb on + strand at 176.699 kb on + strand at 176.700 kb on - strand at 176.701 kb on + strand at 176.701 kb on + strand at 176.702 kb on - strand at 176.729 kb on - strand, within CA264_00825 at 176.729 kb on - strand, within CA264_00825 at 176.729 kb on - strand, within CA264_00825 at 176.838 kb on + strand, within CA264_00825
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 173,523 + CA264_00810 0.56 -1.1 173,695 + CA264_00810 0.82 -2.0 173,770 + -0.8 173,773 + +0.4 173,783 + -0.1 173,830 + -0.2 173,881 + +0.3 173,881 + -0.6 173,891 + -0.3 173,940 + CA264_00815 0.10 +0.5 174,000 + CA264_00815 0.23 +0.2 174,009 - CA264_00815 0.25 +0.7 174,019 + CA264_00815 0.27 -0.3 174,020 - CA264_00815 0.27 +0.2 174,260 + CA264_00815 0.77 +0.0 174,346 - -0.1 174,446 - +1.4 174,478 - -0.7 174,501 + -1.1 174,557 - -1.8 174,557 - -0.8 174,590 - -0.7 174,805 + CA264_00820 0.22 -0.4 174,806 - CA264_00820 0.23 +1.0 174,806 - CA264_00820 0.23 -0.8 174,809 + CA264_00820 0.23 +0.4 174,927 + CA264_00820 0.31 -0.4 174,960 + CA264_00820 0.34 -0.4 175,015 + CA264_00820 0.38 +0.0 175,023 + CA264_00820 0.39 -0.5 175,023 + CA264_00820 0.39 -0.2 175,043 + CA264_00820 0.40 -0.3 175,072 + CA264_00820 0.42 -1.0 175,078 - CA264_00820 0.43 -0.2 175,078 - CA264_00820 0.43 -0.1 175,078 - CA264_00820 0.43 -0.5 175,090 + CA264_00820 0.44 +0.5 175,091 - CA264_00820 0.44 -1.2 175,091 - CA264_00820 0.44 -2.0 175,096 + CA264_00820 0.44 -1.3 175,096 + CA264_00820 0.44 +0.2 175,096 + CA264_00820 0.44 -0.5 175,096 + CA264_00820 0.44 -0.0 175,096 + CA264_00820 0.44 +0.0 175,097 - CA264_00820 0.44 -0.3 175,097 - CA264_00820 0.44 -0.4 175,097 - CA264_00820 0.44 -0.7 175,097 - CA264_00820 0.44 -0.5 175,097 - CA264_00820 0.44 -0.2 175,309 + CA264_00820 0.60 -0.9 175,309 + CA264_00820 0.60 -2.3 175,309 + CA264_00820 0.60 +0.4 175,310 - CA264_00820 0.60 -1.2 175,353 - CA264_00820 0.63 +0.2 175,407 + CA264_00820 0.67 +0.3 175,408 - CA264_00820 0.67 -1.8 175,415 - CA264_00820 0.68 -0.6 175,625 + CA264_00820 0.83 +0.5 175,626 - CA264_00820 0.83 -0.3 175,632 + CA264_00820 0.84 -0.6 175,632 + CA264_00820 0.84 -0.5 175,722 - -0.5 175,758 + -0.1 175,762 + +0.5 175,775 - -0.3 175,775 - -0.0 175,775 - -0.0 175,810 - -1.7 175,836 - -1.7 175,856 - -0.7 175,856 - -0.1 175,907 - -2.4 175,915 + +1.0 175,916 - -0.3 175,916 - -0.8 175,943 + -0.7 175,944 - -0.8 175,955 + -0.4 175,978 + -0.5 176,033 + -0.2 176,033 + +1.2 176,121 + -0.2 176,122 - -0.7 176,122 - -1.6 176,123 + +0.9 176,123 + -0.8 176,123 + -0.4 176,123 + +0.4 176,124 - -0.9 176,124 - -0.4 176,141 + -1.3 176,142 - -0.7 176,142 - -0.6 176,180 + -0.4 176,186 + -0.2 176,186 + -0.5 176,186 + -0.4 176,186 + -0.2 176,190 + +0.2 176,257 - +0.0 176,257 - -0.2 176,264 + -0.1 176,265 - -0.4 176,277 + -1.7 176,280 + -0.1 176,281 - -0.0 176,284 + -0.1 176,284 + -0.1 176,284 + -0.3 176,285 - +0.2 176,285 - +0.1 176,285 - +0.2 176,285 - +0.4 176,289 + +1.4 176,289 + -1.3 176,290 - -2.5 176,290 - +0.4 176,290 - -1.7 176,291 + -0.0 176,291 + +1.2 176,292 - +0.1 176,292 - -0.2 176,292 - +0.4 176,292 - +0.0 176,311 + -0.1 176,370 + -0.4 176,429 - -0.4 176,429 - +0.5 176,437 - +0.6 176,437 - +0.4 176,492 + -0.6 176,522 + +0.3 176,525 + +0.5 176,525 + +0.4 176,525 + -1.1 176,526 - -0.4 176,529 + -0.6 176,530 - -0.3 176,633 + -0.3 176,665 + +0.2 176,666 - -0.6 176,666 - -0.7 176,666 - -0.1 176,666 - +0.4 176,668 + -0.5 176,699 + -1.0 176,699 + -0.4 176,700 - -0.5 176,701 + +0.5 176,701 + -3.1 176,702 - -0.1 176,729 - CA264_00825 0.11 +0.8 176,729 - CA264_00825 0.11 +1.6 176,729 - CA264_00825 0.11 +0.3 176,838 + CA264_00825 0.26 +2.7
Or see this region's nucleotide sequence