Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00255

Experiment: m.b. nitrite 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00250 and CA264_00255 are separated by 342 nucleotidesCA264_00255 and CA264_00260 are separated by 29 nucleotides CA264_00250: CA264_00250 - hypothetical protein, at 59,711 to 62,431 _00250 CA264_00255: CA264_00255 - hypothetical protein, at 62,774 to 63,283 _00255 CA264_00260: CA264_00260 - magnesium and cobalt transport protein CorA, at 63,313 to 64,443 _00260 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2at 61.856 kb on + strand, within CA264_00250at 61.856 kb on + strand, within CA264_00250at 61.857 kb on - strand, within CA264_00250at 62.110 kb on + strand, within CA264_00250at 62.214 kb on - strandat 62.214 kb on - strandat 62.214 kb on - strandat 62.242 kb on - strandat 62.348 kb on + strandat 62.369 kb on + strandat 62.369 kb on + strandat 62.435 kb on - strandat 62.457 kb on + strandat 62.458 kb on - strandat 62.458 kb on - strandat 62.458 kb on - strandat 62.458 kb on - strandat 62.471 kb on + strandat 62.477 kb on - strandat 62.489 kb on - strandat 62.495 kb on - strandat 62.506 kb on + strandat 62.533 kb on + strandat 62.547 kb on + strandat 62.547 kb on + strandat 62.548 kb on - strandat 62.548 kb on - strandat 62.548 kb on - strandat 62.548 kb on - strandat 62.548 kb on - strandat 62.548 kb on - strandat 62.550 kb on + strandat 62.550 kb on + strandat 62.554 kb on + strandat 62.554 kb on + strandat 62.555 kb on - strandat 62.573 kb on - strandat 62.629 kb on - strandat 62.634 kb on + strandat 62.634 kb on + strandat 62.635 kb on - strandat 62.645 kb on - strandat 62.661 kb on + strandat 62.684 kb on + strandat 62.725 kb on - strandat 62.725 kb on - strandat 62.742 kb on + strandat 62.762 kb on + strandat 62.778 kb on - strandat 62.778 kb on - strandat 62.778 kb on - strandat 62.857 kb on + strand, within CA264_00255at 62.857 kb on + strand, within CA264_00255at 62.877 kb on + strand, within CA264_00255at 62.895 kb on - strand, within CA264_00255at 62.895 kb on - strand, within CA264_00255at 62.919 kb on - strand, within CA264_00255at 62.931 kb on + strand, within CA264_00255at 62.931 kb on + strand, within CA264_00255at 62.932 kb on - strand, within CA264_00255at 62.932 kb on - strand, within CA264_00255at 62.932 kb on - strand, within CA264_00255at 62.937 kb on - strand, within CA264_00255at 62.937 kb on - strand, within CA264_00255at 62.939 kb on + strand, within CA264_00255at 62.942 kb on + strand, within CA264_00255at 62.942 kb on + strand, within CA264_00255at 62.942 kb on + strand, within CA264_00255at 62.943 kb on - strand, within CA264_00255at 62.943 kb on - strand, within CA264_00255at 62.991 kb on - strand, within CA264_00255at 62.995 kb on + strand, within CA264_00255at 62.997 kb on + strand, within CA264_00255at 62.997 kb on + strand, within CA264_00255at 63.118 kb on + strand, within CA264_00255at 63.118 kb on + strand, within CA264_00255at 63.165 kb on - strand, within CA264_00255at 63.169 kb on + strand, within CA264_00255at 63.169 kb on + strand, within CA264_00255at 63.170 kb on - strand, within CA264_00255at 63.204 kb on - strand, within CA264_00255at 63.248 kb on + strandat 63.282 kb on - strandat 63.306 kb on - strandat 63.350 kb on + strandat 63.366 kb on + strandat 63.366 kb on + strandat 63.366 kb on + strandat 63.367 kb on - strandat 63.367 kb on - strandat 63.432 kb on - strand, within CA264_00260at 63.490 kb on + strand, within CA264_00260at 63.491 kb on - strand, within CA264_00260at 63.491 kb on - strand, within CA264_00260at 63.491 kb on - strand, within CA264_00260at 63.495 kb on + strand, within CA264_00260at 63.502 kb on + strand, within CA264_00260at 63.525 kb on + strand, within CA264_00260at 63.578 kb on + strand, within CA264_00260at 63.578 kb on + strand, within CA264_00260at 63.579 kb on - strand, within CA264_00260at 63.579 kb on - strand, within CA264_00260at 63.579 kb on - strand, within CA264_00260at 63.628 kb on + strand, within CA264_00260at 63.795 kb on + strand, within CA264_00260at 63.795 kb on + strand, within CA264_00260at 63.796 kb on - strand, within CA264_00260at 63.796 kb on - strand, within CA264_00260at 63.801 kb on + strand, within CA264_00260at 63.801 kb on + strand, within CA264_00260at 63.843 kb on - strand, within CA264_00260at 63.843 kb on - strand, within CA264_00260at 63.903 kb on - strand, within CA264_00260at 63.911 kb on + strand, within CA264_00260at 63.911 kb on + strand, within CA264_00260at 63.946 kb on + strand, within CA264_00260at 64.010 kb on + strand, within CA264_00260at 64.010 kb on + strand, within CA264_00260at 64.010 kb on + strand, within CA264_00260at 64.010 kb on + strand, within CA264_00260at 64.011 kb on - strand, within CA264_00260at 64.187 kb on - strand, within CA264_00260at 64.189 kb on + strand, within CA264_00260at 64.190 kb on - strand, within CA264_00260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
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61,856 + CA264_00250 0.79 -0.2
61,856 + CA264_00250 0.79 +1.6
61,857 - CA264_00250 0.79 +0.4
62,110 + CA264_00250 0.88 -0.1
62,214 - +0.6
62,214 - +0.2
62,214 - +0.7
62,242 - -0.3
62,348 + -0.2
62,369 + -1.8
62,369 + -1.2
62,435 - -0.2
62,457 + +0.5
62,458 - -0.1
62,458 - +1.2
62,458 - +1.0
62,458 - -0.8
62,471 + -0.9
62,477 - -0.5
62,489 - +0.1
62,495 - -0.4
62,506 + -0.6
62,533 + -0.3
62,547 + -0.7
62,547 + -0.0
62,548 - -0.9
62,548 - -0.4
62,548 - -0.5
62,548 - +0.0
62,548 - -0.8
62,548 - -0.5
62,550 + -0.0
62,550 + -0.0
62,554 + +0.4
62,554 + -0.6
62,555 - +1.7
62,573 - +0.8
62,629 - -0.4
62,634 + -0.8
62,634 + -0.6
62,635 - +0.1
62,645 - +1.4
62,661 + +0.7
62,684 + -0.2
62,725 - -2.0
62,725 - -1.4
62,742 + -1.3
62,762 + +0.4
62,778 - -0.7
62,778 - -0.0
62,778 - -0.7
62,857 + CA264_00255 0.16 -0.3
62,857 + CA264_00255 0.16 -1.4
62,877 + CA264_00255 0.20 +0.1
62,895 - CA264_00255 0.24 -0.3
62,895 - CA264_00255 0.24 -0.2
62,919 - CA264_00255 0.28 -0.2
62,931 + CA264_00255 0.31 +1.0
62,931 + CA264_00255 0.31 -0.7
62,932 - CA264_00255 0.31 -0.5
62,932 - CA264_00255 0.31 +0.9
62,932 - CA264_00255 0.31 -1.8
62,937 - CA264_00255 0.32 +0.4
62,937 - CA264_00255 0.32 -1.4
62,939 + CA264_00255 0.32 -0.1
62,942 + CA264_00255 0.33 -2.3
62,942 + CA264_00255 0.33 -0.2
62,942 + CA264_00255 0.33 +0.0
62,943 - CA264_00255 0.33 +0.3
62,943 - CA264_00255 0.33 -0.2
62,991 - CA264_00255 0.43 -1.2
62,995 + CA264_00255 0.43 -1.0
62,997 + CA264_00255 0.44 -0.4
62,997 + CA264_00255 0.44 -0.8
63,118 + CA264_00255 0.67 -0.2
63,118 + CA264_00255 0.67 +1.4
63,165 - CA264_00255 0.77 +0.5
63,169 + CA264_00255 0.77 -0.4
63,169 + CA264_00255 0.77 -0.1
63,170 - CA264_00255 0.78 -0.3
63,204 - CA264_00255 0.84 -0.5
63,248 + -0.3
63,282 - -0.6
63,306 - -0.1
63,350 + +0.1
63,366 + +0.2
63,366 + -0.1
63,366 + -1.8
63,367 - -1.2
63,367 - -0.8
63,432 - CA264_00260 0.11 +0.1
63,490 + CA264_00260 0.16 -0.2
63,491 - CA264_00260 0.16 -0.0
63,491 - CA264_00260 0.16 -0.2
63,491 - CA264_00260 0.16 +0.4
63,495 + CA264_00260 0.16 -2.0
63,502 + CA264_00260 0.17 -0.5
63,525 + CA264_00260 0.19 -0.2
63,578 + CA264_00260 0.23 -0.1
63,578 + CA264_00260 0.23 -0.1
63,579 - CA264_00260 0.24 +0.5
63,579 - CA264_00260 0.24 +0.8
63,579 - CA264_00260 0.24 +0.3
63,628 + CA264_00260 0.28 -0.4
63,795 + CA264_00260 0.43 +2.2
63,795 + CA264_00260 0.43 -0.3
63,796 - CA264_00260 0.43 +0.4
63,796 - CA264_00260 0.43 +0.3
63,801 + CA264_00260 0.43 +1.3
63,801 + CA264_00260 0.43 -0.1
63,843 - CA264_00260 0.47 -0.4
63,843 - CA264_00260 0.47 +1.0
63,903 - CA264_00260 0.52 -0.6
63,911 + CA264_00260 0.53 -0.2
63,911 + CA264_00260 0.53 +0.2
63,946 + CA264_00260 0.56 -0.5
64,010 + CA264_00260 0.62 -0.3
64,010 + CA264_00260 0.62 -0.5
64,010 + CA264_00260 0.62 +0.1
64,010 + CA264_00260 0.62 -0.4
64,011 - CA264_00260 0.62 -0.4
64,187 - CA264_00260 0.77 -1.1
64,189 + CA264_00260 0.77 +0.4
64,190 - CA264_00260 0.78 -0.5

Or see this region's nucleotide sequence