Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0598 and Atu0599 are separated by 124 nucleotides Atu0599 and Atu0600 are separated by 10 nucleotides Atu0600 and Atu0601 are separated by 136 nucleotides
Atu0598: Atu0598 - phosphogluconate dehydratase, at 583,195 to 585,015
Atu0598
Atu0599: Atu0599 - 6-phosphogluconolactonase, at 585,140 to 585,838
Atu0599
Atu0600: Atu0600 - glucose-6-phosphate 1-dehydrogenase, at 585,849 to 587,324
Atu0600
Atu0601: Atu0601 - oxidoreductase, at 587,461 to 588,747
Atu0601
Position (kb) 585
586
587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 584.887 kb on + strand at 584.895 kb on - strand at 584.957 kb on + strand at 584.992 kb on - strand at 585.123 kb on - strand at 587.483 kb on + strand at 587.491 kb on - strand at 587.506 kb on - strand at 587.548 kb on + strand at 587.608 kb on - strand, within Atu0601 at 587.608 kb on - strand, within Atu0601 at 587.608 kb on - strand, within Atu0601 at 587.696 kb on + strand, within Atu0601 at 587.706 kb on + strand, within Atu0601 at 587.714 kb on - strand, within Atu0601 at 587.819 kb on + strand, within Atu0601 at 587.853 kb on + strand, within Atu0601 at 587.914 kb on + strand, within Atu0601 at 587.943 kb on - strand, within Atu0601
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 584,887 + +0.0 584,895 - -1.1 584,957 + -0.1 584,992 - -1.0 585,123 - +0.4 587,483 + +0.0 587,491 - -2.0 587,506 - -2.5 587,548 + -1.9 587,608 - Atu0601 0.11 -1.6 587,608 - Atu0601 0.11 -3.1 587,608 - Atu0601 0.11 -2.2 587,696 + Atu0601 0.18 -1.5 587,706 + Atu0601 0.19 -1.9 587,714 - Atu0601 0.20 -1.9 587,819 + Atu0601 0.28 -2.5 587,853 + Atu0601 0.30 -2.2 587,914 + Atu0601 0.35 -3.1 587,943 - Atu0601 0.37 -2.5
Or see this region's nucleotide sequence