Experiment: 150_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04710 and AMB_RS23915 overlap by 4 nucleotides AMB_RS23915 and AMB_RS23920 are separated by 150 nucleotides AMB_RS23920 and AMB_RS04720 are separated by 305 nucleotides AMB_RS04720 and AMB_RS04725 are separated by 85 nucleotides
AMB_RS04710: AMB_RS04710 - type II toxin-antitoxin system RelE/ParE family toxin, at 985,389 to 985,715
_RS04710
AMB_RS23915: AMB_RS23915 - XRE family transcriptional regulator, at 985,712 to 985,993
_RS23915
AMB_RS23920: AMB_RS23920 - transcriptional repressor, at 986,144 to 986,539
_RS23920
AMB_RS04720: AMB_RS04720 - response regulator, at 986,845 to 987,225
_RS04720
AMB_RS04725: AMB_RS04725 - transcriptional regulator NrdR, at 987,311 to 987,772
_RS04725
Position (kb) 986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 985.168 kb on + strand at 985.169 kb on - strand at 985.169 kb on - strand at 985.173 kb on + strand at 985.346 kb on + strand at 985.346 kb on + strand at 985.346 kb on + strand at 985.347 kb on - strand at 985.350 kb on + strand at 985.350 kb on + strand at 985.350 kb on + strand at 985.382 kb on + strand at 985.382 kb on + strand at 985.383 kb on - strand at 985.455 kb on - strand, within AMB_RS04710 at 985.511 kb on + strand, within AMB_RS04710 at 985.511 kb on + strand, within AMB_RS04710 at 985.512 kb on - strand, within AMB_RS04710 at 985.512 kb on - strand, within AMB_RS04710 at 985.512 kb on - strand, within AMB_RS04710 at 985.550 kb on - strand, within AMB_RS04710 at 985.596 kb on + strand, within AMB_RS04710 at 985.596 kb on + strand, within AMB_RS04710 at 985.596 kb on + strand, within AMB_RS04710 at 985.596 kb on + strand, within AMB_RS04710 at 985.738 kb on + strand at 985.773 kb on - strand, within AMB_RS23915 at 985.839 kb on + strand, within AMB_RS23915 at 985.840 kb on - strand, within AMB_RS23915 at 986.053 kb on + strand at 986.054 kb on - strand at 986.054 kb on - strand at 986.061 kb on + strand at 986.146 kb on - strand at 986.146 kb on - strand at 986.217 kb on + strand, within AMB_RS23920 at 986.218 kb on - strand, within AMB_RS23920 at 986.223 kb on + strand, within AMB_RS23920 at 986.224 kb on - strand, within AMB_RS23920 at 986.224 kb on - strand, within AMB_RS23920 at 986.224 kb on - strand, within AMB_RS23920 at 986.224 kb on - strand, within AMB_RS23920 at 986.431 kb on + strand, within AMB_RS23920 at 986.432 kb on - strand, within AMB_RS23920 at 986.432 kb on - strand, within AMB_RS23920 at 986.432 kb on - strand, within AMB_RS23920 at 986.659 kb on + strand at 986.713 kb on + strand at 986.714 kb on - strand at 986.803 kb on + strand at 986.808 kb on - strand at 986.939 kb on - strand, within AMB_RS04720 at 987.044 kb on + strand, within AMB_RS04720 at 987.060 kb on - strand, within AMB_RS04720 at 987.060 kb on - strand, within AMB_RS04720 at 987.060 kb on - strand, within AMB_RS04720 at 987.094 kb on - strand, within AMB_RS04720 at 987.164 kb on - strand, within AMB_RS04720 at 987.223 kb on + strand at 987.227 kb on + strand at 987.227 kb on + strand at 987.228 kb on - strand at 987.228 kb on - strand at 987.264 kb on + strand at 987.283 kb on + strand at 987.283 kb on + strand at 987.283 kb on + strand at 987.290 kb on + strand at 987.290 kb on + strand at 987.291 kb on - strand at 987.291 kb on - strand at 987.312 kb on + strand at 987.312 kb on + strand at 987.423 kb on - strand, within AMB_RS04725 at 987.423 kb on - strand, within AMB_RS04725
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_3 remove 985,168 + -0.6 985,169 - -2.1 985,169 - -2.1 985,173 + -0.1 985,346 + -0.4 985,346 + +0.4 985,346 + -1.9 985,347 - -0.8 985,350 + -1.4 985,350 + -1.0 985,350 + -0.3 985,382 + -0.1 985,382 + -0.9 985,383 - +1.1 985,455 - AMB_RS04710 0.20 +1.4 985,511 + AMB_RS04710 0.37 -0.3 985,511 + AMB_RS04710 0.37 -1.7 985,512 - AMB_RS04710 0.38 -1.0 985,512 - AMB_RS04710 0.38 -0.2 985,512 - AMB_RS04710 0.38 +0.8 985,550 - AMB_RS04710 0.49 -0.2 985,596 + AMB_RS04710 0.63 -0.6 985,596 + AMB_RS04710 0.63 +0.3 985,596 + AMB_RS04710 0.63 -0.2 985,596 + AMB_RS04710 0.63 -0.2 985,738 + -0.6 985,773 - AMB_RS23915 0.22 -1.0 985,839 + AMB_RS23915 0.45 -0.8 985,840 - AMB_RS23915 0.45 -1.6 986,053 + -3.6 986,054 - -0.9 986,054 - +0.2 986,061 + +1.6 986,146 - -0.2 986,146 - -0.3 986,217 + AMB_RS23920 0.18 -0.6 986,218 - AMB_RS23920 0.19 -1.3 986,223 + AMB_RS23920 0.20 -1.0 986,224 - AMB_RS23920 0.20 +0.2 986,224 - AMB_RS23920 0.20 -0.4 986,224 - AMB_RS23920 0.20 -1.2 986,224 - AMB_RS23920 0.20 -3.6 986,431 + AMB_RS23920 0.72 -0.7 986,432 - AMB_RS23920 0.73 +0.4 986,432 - AMB_RS23920 0.73 -0.5 986,432 - AMB_RS23920 0.73 -0.1 986,659 + -0.7 986,713 + -0.1 986,714 - -0.6 986,803 + -0.6 986,808 - +0.2 986,939 - AMB_RS04720 0.25 -0.2 987,044 + AMB_RS04720 0.52 -0.4 987,060 - AMB_RS04720 0.56 +1.1 987,060 - AMB_RS04720 0.56 -1.3 987,060 - AMB_RS04720 0.56 +0.2 987,094 - AMB_RS04720 0.65 +1.3 987,164 - AMB_RS04720 0.84 -0.6 987,223 + -3.1 987,227 + -1.9 987,227 + -2.1 987,228 - +0.4 987,228 - -0.1 987,264 + +0.7 987,283 + -0.4 987,283 + +0.4 987,283 + +0.0 987,290 + -0.0 987,290 + -0.7 987,291 - +0.8 987,291 - -0.5 987,312 + -1.0 987,312 + +0.1 987,423 - AMB_RS04725 0.24 -0.5 987,423 - AMB_RS04725 0.24 +0.4
Or see this region's nucleotide sequence