Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23245

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05650 and AMB_RS23245 overlap by 4 nucleotidesAMB_RS23245 and AMB_RS05660 are separated by 1 nucleotides AMB_RS05650: AMB_RS05650 - hybrid sensor histidine kinase/response regulator, at 1,185,372 to 1,187,435 _RS05650 AMB_RS23245: AMB_RS23245 - Ni,Fe-hydrogenase maturation factor, at 1,187,432 to 1,187,860 _RS23245 AMB_RS05660: AMB_RS05660 - Ni,Fe-hydrogenase I large subunit, at 1,187,862 to 1,189,400 _RS05660 Position (kb) 1187 1188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1186.808 kb on + strand, within AMB_RS05650at 1186.808 kb on + strand, within AMB_RS05650at 1186.808 kb on + strand, within AMB_RS05650at 1186.808 kb on + strand, within AMB_RS05650at 1186.809 kb on - strand, within AMB_RS05650at 1186.809 kb on - strand, within AMB_RS05650at 1187.002 kb on + strand, within AMB_RS05650at 1187.003 kb on - strand, within AMB_RS05650at 1187.041 kb on + strand, within AMB_RS05650at 1187.041 kb on + strand, within AMB_RS05650at 1187.041 kb on + strand, within AMB_RS05650at 1187.042 kb on - strand, within AMB_RS05650at 1187.042 kb on - strand, within AMB_RS05650at 1187.173 kb on + strand, within AMB_RS05650at 1187.173 kb on + strand, within AMB_RS05650at 1187.173 kb on + strand, within AMB_RS05650at 1187.568 kb on + strand, within AMB_RS23245at 1187.568 kb on + strand, within AMB_RS23245at 1187.904 kb on + strandat 1187.905 kb on - strandat 1188.079 kb on + strand, within AMB_RS05660at 1188.108 kb on + strand, within AMB_RS05660at 1188.187 kb on + strand, within AMB_RS05660at 1188.187 kb on + strand, within AMB_RS05660at 1188.187 kb on + strand, within AMB_RS05660at 1188.187 kb on + strand, within AMB_RS05660at 1188.187 kb on + strand, within AMB_RS05660at 1188.187 kb on + strand, within AMB_RS05660at 1188.187 kb on + strand, within AMB_RS05660at 1188.188 kb on - strand, within AMB_RS05660at 1188.188 kb on - strand, within AMB_RS05660at 1188.188 kb on - strand, within AMB_RS05660at 1188.188 kb on - strand, within AMB_RS05660at 1188.188 kb on - strand, within AMB_RS05660at 1188.188 kb on - strand, within AMB_RS05660at 1188.188 kb on - strand, within AMB_RS05660at 1188.188 kb on - strand, within AMB_RS05660at 1188.188 kb on - strand, within AMB_RS05660at 1188.385 kb on + strand, within AMB_RS05660at 1188.385 kb on + strand, within AMB_RS05660at 1188.410 kb on - strand, within AMB_RS05660at 1188.437 kb on - strand, within AMB_RS05660at 1188.479 kb on - strand, within AMB_RS05660at 1188.487 kb on + strand, within AMB_RS05660at 1188.808 kb on + strand, within AMB_RS05660at 1188.808 kb on + strand, within AMB_RS05660at 1188.808 kb on + strand, within AMB_RS05660at 1188.808 kb on + strand, within AMB_RS05660at 1188.808 kb on + strand, within AMB_RS05660

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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1,186,808 + AMB_RS05650 0.70 -1.2
1,186,808 + AMB_RS05650 0.70 -0.6
1,186,808 + AMB_RS05650 0.70 +0.7
1,186,808 + AMB_RS05650 0.70 +0.2
1,186,809 - AMB_RS05650 0.70 +0.0
1,186,809 - AMB_RS05650 0.70 -1.4
1,187,002 + AMB_RS05650 0.79 +0.6
1,187,003 - AMB_RS05650 0.79 -0.7
1,187,041 + AMB_RS05650 0.81 +0.4
1,187,041 + AMB_RS05650 0.81 -0.8
1,187,041 + AMB_RS05650 0.81 -1.1
1,187,042 - AMB_RS05650 0.81 +0.5
1,187,042 - AMB_RS05650 0.81 +1.8
1,187,173 + AMB_RS05650 0.87 -3.6
1,187,173 + AMB_RS05650 0.87 -0.3
1,187,173 + AMB_RS05650 0.87 +0.5
1,187,568 + AMB_RS23245 0.32 -0.2
1,187,568 + AMB_RS23245 0.32 -0.3
1,187,904 + -0.4
1,187,905 - +0.5
1,188,079 + AMB_RS05660 0.14 -1.9
1,188,108 + AMB_RS05660 0.16 -0.2
1,188,187 + AMB_RS05660 0.21 +0.7
1,188,187 + AMB_RS05660 0.21 -0.1
1,188,187 + AMB_RS05660 0.21 -0.2
1,188,187 + AMB_RS05660 0.21 -0.3
1,188,187 + AMB_RS05660 0.21 +0.9
1,188,187 + AMB_RS05660 0.21 -0.1
1,188,187 + AMB_RS05660 0.21 +0.1
1,188,188 - AMB_RS05660 0.21 +0.3
1,188,188 - AMB_RS05660 0.21 -0.7
1,188,188 - AMB_RS05660 0.21 -0.5
1,188,188 - AMB_RS05660 0.21 +1.2
1,188,188 - AMB_RS05660 0.21 +1.2
1,188,188 - AMB_RS05660 0.21 +0.6
1,188,188 - AMB_RS05660 0.21 -3.4
1,188,188 - AMB_RS05660 0.21 +0.4
1,188,188 - AMB_RS05660 0.21 +0.2
1,188,385 + AMB_RS05660 0.34 -0.5
1,188,385 + AMB_RS05660 0.34 +1.2
1,188,410 - AMB_RS05660 0.36 -0.2
1,188,437 - AMB_RS05660 0.37 -2.6
1,188,479 - AMB_RS05660 0.40 -0.7
1,188,487 + AMB_RS05660 0.41 -0.8
1,188,808 + AMB_RS05660 0.61 +0.6
1,188,808 + AMB_RS05660 0.61 +0.3
1,188,808 + AMB_RS05660 0.61 +0.0
1,188,808 + AMB_RS05660 0.61 -1.7
1,188,808 + AMB_RS05660 0.61 +0.6

Or see this region's nucleotide sequence