Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22400

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22395 and AMB_RS22400 are separated by 252 nucleotidesAMB_RS22400 and AMB_RS22405 are separated by 8 nucleotidesAMB_RS22405 and AMB_RS22410 are separated by 61 nucleotides AMB_RS22395: AMB_RS22395 - cobaltochelatase subunit CobN, at 4,833,087 to 4,836,791 _RS22395 AMB_RS22400: AMB_RS22400 - transposase, at 4,837,044 to 4,837,337 _RS22400 AMB_RS22405: AMB_RS22405 - IS3 family transposase, at 4,837,346 to 4,838,191 _RS22405 AMB_RS22410: AMB_RS22410 - hypothetical protein, at 4,838,253 to 4,838,894 _RS22410 Position (kb) 4837 4838Strain fitness (log2 ratio) -1 0 1 2at 4836.907 kb on + strandat 4836.907 kb on + strandat 4836.907 kb on + strandat 4836.908 kb on - strandat 4836.939 kb on - strandat 4836.939 kb on - strandat 4836.970 kb on - strandat 4838.189 kb on + strandat 4838.224 kb on + strandat 4838.239 kb on + strandat 4838.267 kb on + strandat 4838.268 kb on - strandat 4838.268 kb on - strandat 4838.313 kb on + strandat 4838.314 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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4,836,907 + -0.1
4,836,907 + +2.2
4,836,907 + +0.5
4,836,908 - -1.7
4,836,939 - -1.5
4,836,939 - -0.6
4,836,970 - +0.3
4,838,189 + +0.7
4,838,224 + -0.3
4,838,239 + +1.7
4,838,267 + +1.4
4,838,268 - +0.5
4,838,268 - -1.1
4,838,313 + -0.6
4,838,314 - +0.9

Or see this region's nucleotide sequence