Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19275

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19265 and AMB_RS19270 are separated by 200 nucleotidesAMB_RS19270 and AMB_RS19275 overlap by 23 nucleotidesAMB_RS19275 and AMB_RS19280 overlap by 1 nucleotides AMB_RS19265: AMB_RS19265 - RNA pseudouridine synthase, at 4,204,299 to 4,204,988 _RS19265 AMB_RS19270: AMB_RS19270 - spore coat polysaccharide biosynthesis protein F, at 4,205,189 to 4,205,920 _RS19270 AMB_RS19275: AMB_RS19275 - gfo/Idh/MocA family oxidoreductase, at 4,205,898 to 4,206,887 _RS19275 AMB_RS19280: AMB_RS19280 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 4,206,887 to 4,208,206 _RS19280 Position (kb) 4205 4206 4207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4204.954 kb on + strandat 4205.127 kb on - strandat 4205.127 kb on - strandat 4205.137 kb on + strandat 4205.555 kb on + strand, within AMB_RS19270at 4205.555 kb on + strand, within AMB_RS19270at 4205.555 kb on + strand, within AMB_RS19270at 4205.555 kb on + strand, within AMB_RS19270at 4205.556 kb on - strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.681 kb on + strand, within AMB_RS19270at 4205.682 kb on - strand, within AMB_RS19270at 4205.682 kb on - strand, within AMB_RS19270at 4205.682 kb on - strand, within AMB_RS19270at 4205.682 kb on - strand, within AMB_RS19270at 4205.683 kb on + strand, within AMB_RS19270at 4205.683 kb on + strand, within AMB_RS19270at 4205.683 kb on + strand, within AMB_RS19270at 4205.684 kb on - strand, within AMB_RS19270at 4205.684 kb on - strand, within AMB_RS19270at 4205.687 kb on + strand, within AMB_RS19270at 4205.687 kb on + strand, within AMB_RS19270at 4205.687 kb on + strand, within AMB_RS19270at 4205.687 kb on + strand, within AMB_RS19270at 4205.688 kb on - strand, within AMB_RS19270at 4205.688 kb on - strand, within AMB_RS19270at 4205.705 kb on + strand, within AMB_RS19270at 4205.706 kb on - strand, within AMB_RS19270at 4205.706 kb on - strand, within AMB_RS19270at 4205.783 kb on + strand, within AMB_RS19270at 4205.783 kb on + strand, within AMB_RS19270at 4205.783 kb on + strand, within AMB_RS19270at 4206.018 kb on + strand, within AMB_RS19275at 4206.019 kb on - strand, within AMB_RS19275at 4206.019 kb on - strand, within AMB_RS19275at 4206.145 kb on - strand, within AMB_RS19275at 4206.285 kb on + strand, within AMB_RS19275at 4206.285 kb on + strand, within AMB_RS19275at 4206.286 kb on - strand, within AMB_RS19275at 4206.286 kb on - strand, within AMB_RS19275at 4206.286 kb on - strand, within AMB_RS19275at 4206.318 kb on + strand, within AMB_RS19275at 4206.318 kb on + strand, within AMB_RS19275at 4206.319 kb on - strand, within AMB_RS19275at 4206.408 kb on + strand, within AMB_RS19275at 4206.408 kb on + strand, within AMB_RS19275at 4206.409 kb on - strand, within AMB_RS19275at 4206.409 kb on - strand, within AMB_RS19275at 4206.409 kb on - strand, within AMB_RS19275at 4206.754 kb on - strand, within AMB_RS19275at 4207.137 kb on - strand, within AMB_RS19280at 4207.193 kb on + strand, within AMB_RS19280at 4207.193 kb on + strand, within AMB_RS19280at 4207.194 kb on - strand, within AMB_RS19280at 4207.195 kb on + strand, within AMB_RS19280at 4207.195 kb on + strand, within AMB_RS19280at 4207.195 kb on + strand, within AMB_RS19280at 4207.195 kb on + strand, within AMB_RS19280at 4207.196 kb on - strand, within AMB_RS19280at 4207.196 kb on - strand, within AMB_RS19280at 4207.196 kb on - strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.439 kb on + strand, within AMB_RS19280at 4207.439 kb on + strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.471 kb on + strand, within AMB_RS19280at 4207.493 kb on + strand, within AMB_RS19280at 4207.494 kb on - strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.628 kb on - strand, within AMB_RS19280at 4207.805 kb on + strand, within AMB_RS19280at 4207.806 kb on - strand, within AMB_RS19280at 4207.806 kb on - strand, within AMB_RS19280at 4207.806 kb on - strand, within AMB_RS19280at 4207.806 kb on - strand, within AMB_RS19280at 4207.809 kb on - strand, within AMB_RS19280at 4207.809 kb on - strand, within AMB_RS19280at 4207.826 kb on + strand, within AMB_RS19280at 4207.827 kb on - strand, within AMB_RS19280

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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4,204,954 + -0.1
4,205,127 - -2.8
4,205,127 - -0.1
4,205,137 + -0.2
4,205,555 + AMB_RS19270 0.50 +0.4
4,205,555 + AMB_RS19270 0.50 -2.5
4,205,555 + AMB_RS19270 0.50 +0.1
4,205,555 + AMB_RS19270 0.50 +1.2
4,205,556 - AMB_RS19270 0.50 +0.2
4,205,681 + AMB_RS19270 0.67 +0.3
4,205,681 + AMB_RS19270 0.67 +1.2
4,205,681 + AMB_RS19270 0.67 -0.6
4,205,681 + AMB_RS19270 0.67 +0.5
4,205,681 + AMB_RS19270 0.67 +1.0
4,205,681 + AMB_RS19270 0.67 -1.1
4,205,681 + AMB_RS19270 0.67 +0.0
4,205,682 - AMB_RS19270 0.67 +0.6
4,205,682 - AMB_RS19270 0.67 +0.1
4,205,682 - AMB_RS19270 0.67 +0.5
4,205,682 - AMB_RS19270 0.67 -0.1
4,205,683 + AMB_RS19270 0.67 +0.1
4,205,683 + AMB_RS19270 0.67 -2.9
4,205,683 + AMB_RS19270 0.67 -1.0
4,205,684 - AMB_RS19270 0.68 +0.7
4,205,684 - AMB_RS19270 0.68 -1.1
4,205,687 + AMB_RS19270 0.68 -0.3
4,205,687 + AMB_RS19270 0.68 +1.1
4,205,687 + AMB_RS19270 0.68 -0.5
4,205,687 + AMB_RS19270 0.68 -0.3
4,205,688 - AMB_RS19270 0.68 +0.1
4,205,688 - AMB_RS19270 0.68 +0.6
4,205,705 + AMB_RS19270 0.70 -0.6
4,205,706 - AMB_RS19270 0.71 -3.2
4,205,706 - AMB_RS19270 0.71 -0.5
4,205,783 + AMB_RS19270 0.81 +1.7
4,205,783 + AMB_RS19270 0.81 +0.2
4,205,783 + AMB_RS19270 0.81 +0.9
4,206,018 + AMB_RS19275 0.12 -2.1
4,206,019 - AMB_RS19275 0.12 -0.3
4,206,019 - AMB_RS19275 0.12 -0.0
4,206,145 - AMB_RS19275 0.25 +0.5
4,206,285 + AMB_RS19275 0.39 +0.6
4,206,285 + AMB_RS19275 0.39 +0.2
4,206,286 - AMB_RS19275 0.39 +0.5
4,206,286 - AMB_RS19275 0.39 +0.5
4,206,286 - AMB_RS19275 0.39 +1.0
4,206,318 + AMB_RS19275 0.42 +0.8
4,206,318 + AMB_RS19275 0.42 -0.2
4,206,319 - AMB_RS19275 0.43 +0.3
4,206,408 + AMB_RS19275 0.52 -0.1
4,206,408 + AMB_RS19275 0.52 -0.3
4,206,409 - AMB_RS19275 0.52 -0.0
4,206,409 - AMB_RS19275 0.52 -0.3
4,206,409 - AMB_RS19275 0.52 +0.3
4,206,754 - AMB_RS19275 0.86 -0.6
4,207,137 - AMB_RS19280 0.19 -0.1
4,207,193 + AMB_RS19280 0.23 +0.1
4,207,193 + AMB_RS19280 0.23 -2.7
4,207,194 - AMB_RS19280 0.23 -2.7
4,207,195 + AMB_RS19280 0.23 +0.4
4,207,195 + AMB_RS19280 0.23 -0.0
4,207,195 + AMB_RS19280 0.23 -0.1
4,207,195 + AMB_RS19280 0.23 +1.3
4,207,196 - AMB_RS19280 0.23 -0.2
4,207,196 - AMB_RS19280 0.23 +0.1
4,207,196 - AMB_RS19280 0.23 -0.3
4,207,271 + AMB_RS19280 0.29 +0.8
4,207,271 + AMB_RS19280 0.29 +0.4
4,207,271 + AMB_RS19280 0.29 +3.4
4,207,271 + AMB_RS19280 0.29 -0.7
4,207,271 + AMB_RS19280 0.29 +1.0
4,207,271 + AMB_RS19280 0.29 -1.7
4,207,271 + AMB_RS19280 0.29 +0.5
4,207,271 + AMB_RS19280 0.29 +0.3
4,207,271 + AMB_RS19280 0.29 -0.4
4,207,271 + AMB_RS19280 0.29 -0.2
4,207,272 - AMB_RS19280 0.29 -0.3
4,207,272 - AMB_RS19280 0.29 +1.1
4,207,272 - AMB_RS19280 0.29 +0.3
4,207,272 - AMB_RS19280 0.29 +0.9
4,207,272 - AMB_RS19280 0.29 +0.3
4,207,272 - AMB_RS19280 0.29 -0.8
4,207,272 - AMB_RS19280 0.29 +0.6
4,207,272 - AMB_RS19280 0.29 +0.5
4,207,272 - AMB_RS19280 0.29 +0.4
4,207,272 - AMB_RS19280 0.29 +0.5
4,207,439 + AMB_RS19280 0.42 -0.6
4,207,439 + AMB_RS19280 0.42 +0.7
4,207,440 - AMB_RS19280 0.42 -0.2
4,207,440 - AMB_RS19280 0.42 +0.6
4,207,440 - AMB_RS19280 0.42 -0.7
4,207,440 - AMB_RS19280 0.42 +0.2
4,207,440 - AMB_RS19280 0.42 +0.6
4,207,471 + AMB_RS19280 0.44 -2.1
4,207,493 + AMB_RS19280 0.46 +0.1
4,207,494 - AMB_RS19280 0.46 +2.0
4,207,627 + AMB_RS19280 0.56 -1.0
4,207,627 + AMB_RS19280 0.56 +0.0
4,207,627 + AMB_RS19280 0.56 +1.7
4,207,627 + AMB_RS19280 0.56 +0.3
4,207,627 + AMB_RS19280 0.56 +0.2
4,207,627 + AMB_RS19280 0.56 +0.1
4,207,627 + AMB_RS19280 0.56 -0.7
4,207,628 - AMB_RS19280 0.56 -0.2
4,207,805 + AMB_RS19280 0.70 -0.2
4,207,806 - AMB_RS19280 0.70 +0.3
4,207,806 - AMB_RS19280 0.70 +1.1
4,207,806 - AMB_RS19280 0.70 +0.2
4,207,806 - AMB_RS19280 0.70 +0.1
4,207,809 - AMB_RS19280 0.70 +0.1
4,207,809 - AMB_RS19280 0.70 +1.1
4,207,826 + AMB_RS19280 0.71 +1.6
4,207,827 - AMB_RS19280 0.71 +0.2

Or see this region's nucleotide sequence