Experiment: 150_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS17170 and AMB_RS17175 overlap by 1 nucleotides AMB_RS17175 and AMB_RS17180 are separated by 13 nucleotides AMB_RS17180 and AMB_RS17185 are separated by 134 nucleotides AMB_RS17185 and AMB_RS17190 are separated by 108 nucleotides
AMB_RS17170: AMB_RS17170 - NADP oxidoreductase, at 3,689,495 to 3,690,265
_RS17170
AMB_RS17175: AMB_RS17175 - NADP oxidoreductase, at 3,690,265 to 3,690,816
_RS17175
AMB_RS17180: AMB_RS17180 - Ni/Fe hydrogenase subunit alpha, at 3,690,830 to 3,692,320
_RS17180
AMB_RS17185: AMB_RS17185 - HybD peptidase, at 3,692,455 to 3,692,922
_RS17185
AMB_RS17190: AMB_RS17190 - hypothetical protein, at 3,693,031 to 3,693,552
_RS17190
Position (kb) 3690
3691
3692
3693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3689.831 kb on + strand, within AMB_RS17170 at 3689.832 kb on - strand, within AMB_RS17170 at 3689.882 kb on + strand, within AMB_RS17170 at 3689.883 kb on - strand, within AMB_RS17170 at 3689.918 kb on + strand, within AMB_RS17170 at 3690.240 kb on - strand at 3690.240 kb on - strand at 3690.607 kb on + strand, within AMB_RS17175 at 3690.706 kb on + strand, within AMB_RS17175 at 3690.706 kb on + strand, within AMB_RS17175 at 3690.706 kb on + strand, within AMB_RS17175 at 3690.707 kb on - strand, within AMB_RS17175 at 3690.707 kb on - strand, within AMB_RS17175 at 3690.808 kb on + strand at 3690.809 kb on - strand at 3691.054 kb on - strand, within AMB_RS17180 at 3691.424 kb on + strand, within AMB_RS17180 at 3691.514 kb on + strand, within AMB_RS17180 at 3691.514 kb on + strand, within AMB_RS17180 at 3691.514 kb on + strand, within AMB_RS17180 at 3691.515 kb on - strand, within AMB_RS17180 at 3691.515 kb on - strand, within AMB_RS17180 at 3691.583 kb on + strand, within AMB_RS17180 at 3691.583 kb on + strand, within AMB_RS17180 at 3691.584 kb on - strand, within AMB_RS17180 at 3691.584 kb on - strand, within AMB_RS17180 at 3691.643 kb on + strand, within AMB_RS17180 at 3691.643 kb on + strand, within AMB_RS17180 at 3691.643 kb on + strand, within AMB_RS17180 at 3691.644 kb on - strand, within AMB_RS17180 at 3691.644 kb on - strand, within AMB_RS17180 at 3691.644 kb on - strand, within AMB_RS17180 at 3691.644 kb on - strand, within AMB_RS17180 at 3691.644 kb on - strand, within AMB_RS17180 at 3691.644 kb on - strand, within AMB_RS17180 at 3691.644 kb on - strand, within AMB_RS17180 at 3691.652 kb on + strand, within AMB_RS17180 at 3691.652 kb on + strand, within AMB_RS17180 at 3691.652 kb on + strand, within AMB_RS17180 at 3691.652 kb on + strand, within AMB_RS17180 at 3691.652 kb on + strand, within AMB_RS17180 at 3691.653 kb on - strand, within AMB_RS17180 at 3691.653 kb on - strand, within AMB_RS17180 at 3691.653 kb on - strand, within AMB_RS17180 at 3691.653 kb on - strand, within AMB_RS17180 at 3691.653 kb on - strand, within AMB_RS17180 at 3691.691 kb on + strand, within AMB_RS17180 at 3691.691 kb on + strand, within AMB_RS17180 at 3691.691 kb on + strand, within AMB_RS17180 at 3691.691 kb on + strand, within AMB_RS17180 at 3691.692 kb on - strand, within AMB_RS17180 at 3691.706 kb on + strand, within AMB_RS17180 at 3691.706 kb on + strand, within AMB_RS17180 at 3691.706 kb on + strand, within AMB_RS17180 at 3691.706 kb on + strand, within AMB_RS17180 at 3691.707 kb on - strand, within AMB_RS17180 at 3691.739 kb on + strand, within AMB_RS17180 at 3691.739 kb on + strand, within AMB_RS17180 at 3691.740 kb on - strand, within AMB_RS17180 at 3691.740 kb on - strand, within AMB_RS17180 at 3692.024 kb on + strand, within AMB_RS17180 at 3692.054 kb on + strand, within AMB_RS17180 at 3692.054 kb on + strand, within AMB_RS17180 at 3692.054 kb on + strand, within AMB_RS17180 at 3692.054 kb on + strand, within AMB_RS17180 at 3692.054 kb on + strand, within AMB_RS17180 at 3692.055 kb on - strand, within AMB_RS17180 at 3692.055 kb on - strand, within AMB_RS17180 at 3692.055 kb on - strand, within AMB_RS17180 at 3692.090 kb on - strand, within AMB_RS17180 at 3692.129 kb on + strand, within AMB_RS17180 at 3692.129 kb on + strand, within AMB_RS17180 at 3692.129 kb on + strand, within AMB_RS17180 at 3692.130 kb on - strand, within AMB_RS17180 at 3692.130 kb on - strand, within AMB_RS17180 at 3692.764 kb on + strand, within AMB_RS17185 at 3692.764 kb on + strand, within AMB_RS17185 at 3692.764 kb on + strand, within AMB_RS17185 at 3692.764 kb on + strand, within AMB_RS17185 at 3692.764 kb on + strand, within AMB_RS17185 at 3692.764 kb on + strand, within AMB_RS17185 at 3692.764 kb on + strand, within AMB_RS17185 at 3692.765 kb on - strand, within AMB_RS17185 at 3692.765 kb on - strand, within AMB_RS17185 at 3692.765 kb on - strand, within AMB_RS17185 at 3692.765 kb on - strand, within AMB_RS17185 at 3692.766 kb on + strand, within AMB_RS17185 at 3692.766 kb on + strand, within AMB_RS17185 at 3692.987 kb on + strand at 3692.987 kb on + strand at 3692.988 kb on - strand at 3692.988 kb on - strand at 3692.995 kb on + strand at 3692.995 kb on + strand at 3692.995 kb on + strand at 3692.996 kb on - strand at 3692.996 kb on - strand at 3692.996 kb on - strand at 3693.022 kb on + strand at 3693.265 kb on + strand, within AMB_RS17190 at 3693.265 kb on + strand, within AMB_RS17190 at 3693.265 kb on + strand, within AMB_RS17190 at 3693.265 kb on + strand, within AMB_RS17190 at 3693.265 kb on + strand, within AMB_RS17190 at 3693.265 kb on + strand, within AMB_RS17190 at 3693.265 kb on + strand, within AMB_RS17190 at 3693.265 kb on + strand, within AMB_RS17190 at 3693.266 kb on - strand, within AMB_RS17190 at 3693.266 kb on - strand, within AMB_RS17190 at 3693.266 kb on - strand, within AMB_RS17190 at 3693.266 kb on - strand, within AMB_RS17190 at 3693.268 kb on + strand, within AMB_RS17190
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_3 remove 3,689,831 + AMB_RS17170 0.44 -0.8 3,689,832 - AMB_RS17170 0.44 -1.2 3,689,882 + AMB_RS17170 0.50 -0.6 3,689,883 - AMB_RS17170 0.50 +0.2 3,689,918 + AMB_RS17170 0.55 +0.0 3,690,240 - -1.6 3,690,240 - +1.0 3,690,607 + AMB_RS17175 0.62 -0.6 3,690,706 + AMB_RS17175 0.80 +1.0 3,690,706 + AMB_RS17175 0.80 -0.1 3,690,706 + AMB_RS17175 0.80 -0.6 3,690,707 - AMB_RS17175 0.80 -0.8 3,690,707 - AMB_RS17175 0.80 -0.1 3,690,808 + -0.5 3,690,809 - -0.2 3,691,054 - AMB_RS17180 0.15 +1.2 3,691,424 + AMB_RS17180 0.40 -1.2 3,691,514 + AMB_RS17180 0.46 +0.8 3,691,514 + AMB_RS17180 0.46 +0.0 3,691,514 + AMB_RS17180 0.46 +0.1 3,691,515 - AMB_RS17180 0.46 +0.2 3,691,515 - AMB_RS17180 0.46 +0.2 3,691,583 + AMB_RS17180 0.51 +0.0 3,691,583 + AMB_RS17180 0.51 -0.2 3,691,584 - AMB_RS17180 0.51 +0.2 3,691,584 - AMB_RS17180 0.51 -0.8 3,691,643 + AMB_RS17180 0.55 +0.9 3,691,643 + AMB_RS17180 0.55 +1.2 3,691,643 + AMB_RS17180 0.55 -1.4 3,691,644 - AMB_RS17180 0.55 +0.2 3,691,644 - AMB_RS17180 0.55 -1.8 3,691,644 - AMB_RS17180 0.55 +0.5 3,691,644 - AMB_RS17180 0.55 -0.6 3,691,644 - AMB_RS17180 0.55 +1.5 3,691,644 - AMB_RS17180 0.55 -1.6 3,691,644 - AMB_RS17180 0.55 -1.2 3,691,652 + AMB_RS17180 0.55 +0.2 3,691,652 + AMB_RS17180 0.55 -1.0 3,691,652 + AMB_RS17180 0.55 +0.0 3,691,652 + AMB_RS17180 0.55 -0.0 3,691,652 + AMB_RS17180 0.55 -1.7 3,691,653 - AMB_RS17180 0.55 +1.3 3,691,653 - AMB_RS17180 0.55 -1.9 3,691,653 - AMB_RS17180 0.55 +0.7 3,691,653 - AMB_RS17180 0.55 -0.7 3,691,653 - AMB_RS17180 0.55 +0.2 3,691,691 + AMB_RS17180 0.58 +0.1 3,691,691 + AMB_RS17180 0.58 -0.1 3,691,691 + AMB_RS17180 0.58 -0.5 3,691,691 + AMB_RS17180 0.58 -0.3 3,691,692 - AMB_RS17180 0.58 +0.4 3,691,706 + AMB_RS17180 0.59 +0.4 3,691,706 + AMB_RS17180 0.59 -0.3 3,691,706 + AMB_RS17180 0.59 +0.8 3,691,706 + AMB_RS17180 0.59 +0.4 3,691,707 - AMB_RS17180 0.59 -0.4 3,691,739 + AMB_RS17180 0.61 +1.5 3,691,739 + AMB_RS17180 0.61 +0.4 3,691,740 - AMB_RS17180 0.61 -0.0 3,691,740 - AMB_RS17180 0.61 -0.0 3,692,024 + AMB_RS17180 0.80 -1.0 3,692,054 + AMB_RS17180 0.82 -2.2 3,692,054 + AMB_RS17180 0.82 +0.0 3,692,054 + AMB_RS17180 0.82 +0.2 3,692,054 + AMB_RS17180 0.82 +0.1 3,692,054 + AMB_RS17180 0.82 -0.9 3,692,055 - AMB_RS17180 0.82 -0.3 3,692,055 - AMB_RS17180 0.82 +0.2 3,692,055 - AMB_RS17180 0.82 +0.7 3,692,090 - AMB_RS17180 0.85 -0.7 3,692,129 + AMB_RS17180 0.87 -0.6 3,692,129 + AMB_RS17180 0.87 +0.4 3,692,129 + AMB_RS17180 0.87 -0.6 3,692,130 - AMB_RS17180 0.87 -1.2 3,692,130 - AMB_RS17180 0.87 +0.2 3,692,764 + AMB_RS17185 0.66 -0.6 3,692,764 + AMB_RS17185 0.66 +0.0 3,692,764 + AMB_RS17185 0.66 -0.6 3,692,764 + AMB_RS17185 0.66 +0.6 3,692,764 + AMB_RS17185 0.66 +1.0 3,692,764 + AMB_RS17185 0.66 +0.6 3,692,764 + AMB_RS17185 0.66 -1.6 3,692,765 - AMB_RS17185 0.66 -0.5 3,692,765 - AMB_RS17185 0.66 -0.0 3,692,765 - AMB_RS17185 0.66 -3.2 3,692,765 - AMB_RS17185 0.66 +0.6 3,692,766 + AMB_RS17185 0.66 +1.2 3,692,766 + AMB_RS17185 0.66 +0.8 3,692,987 + +2.0 3,692,987 + -1.0 3,692,988 - -1.9 3,692,988 - +0.4 3,692,995 + +0.7 3,692,995 + -1.5 3,692,995 + -0.4 3,692,996 - -0.4 3,692,996 - -0.1 3,692,996 - -0.7 3,693,022 + +0.7 3,693,265 + AMB_RS17190 0.45 -0.3 3,693,265 + AMB_RS17190 0.45 -0.4 3,693,265 + AMB_RS17190 0.45 -0.3 3,693,265 + AMB_RS17190 0.45 -0.5 3,693,265 + AMB_RS17190 0.45 +1.3 3,693,265 + AMB_RS17190 0.45 -0.1 3,693,265 + AMB_RS17190 0.45 -0.6 3,693,265 + AMB_RS17190 0.45 -1.2 3,693,266 - AMB_RS17190 0.45 +0.7 3,693,266 - AMB_RS17190 0.45 +0.3 3,693,266 - AMB_RS17190 0.45 -0.5 3,693,266 - AMB_RS17190 0.45 -0.6 3,693,268 + AMB_RS17190 0.45 +0.9
Or see this region's nucleotide sequence