Experiment: 150_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS16025 and AMB_RS16030 are separated by 218 nucleotides AMB_RS16030 and AMB_RS16035 overlap by 4 nucleotides AMB_RS16035 and AMB_RS16040 are separated by 44 nucleotides
AMB_RS16025: AMB_RS16025 - MFS transporter, at 3,439,261 to 3,440,574
_RS16025
AMB_RS16030: AMB_RS16030 - L(+)-tartrate dehydratase subunit beta, at 3,440,793 to 3,441,401
_RS16030
AMB_RS16035: AMB_RS16035 - L(+)-tartrate dehydratase subunit alpha, at 3,441,398 to 3,442,396
_RS16035
AMB_RS16040: AMB_RS16040 - LysR family transcriptional regulator, at 3,442,441 to 3,443,356
_RS16040
Position (kb)
3441
3442
3443 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3440.601 kb on - strand at 3440.603 kb on - strand at 3440.642 kb on - strand at 3440.664 kb on - strand at 3440.664 kb on - strand at 3440.673 kb on - strand at 3440.696 kb on - strand at 3440.742 kb on + strand at 3440.742 kb on + strand at 3440.743 kb on - strand at 3440.743 kb on - strand at 3440.743 kb on - strand at 3441.433 kb on - strand at 3441.861 kb on + strand, within AMB_RS16035 at 3441.862 kb on - strand, within AMB_RS16035
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_3 remove 3,440,601 - -1.9 3,440,603 - -0.3 3,440,642 - -1.0 3,440,664 - -1.4 3,440,664 - -3.3 3,440,673 - -2.3 3,440,696 - -1.1 3,440,742 + +0.2 3,440,742 + -2.4 3,440,743 - -1.0 3,440,743 - -1.6 3,440,743 - -1.1 3,441,433 - +0.0 3,441,861 + AMB_RS16035 0.46 -1.7 3,441,862 - AMB_RS16035 0.46 -0.7
Or see this region's nucleotide sequence