Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08465

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08455 and AMB_RS08460 are separated by 4 nucleotidesAMB_RS08460 and AMB_RS08465 overlap by 4 nucleotidesAMB_RS08465 and AMB_RS08470 are separated by 11 nucleotides AMB_RS08455: AMB_RS08455 - branched-chain amino acid ABC transporter permease, at 1,810,416 to 1,811,291 _RS08455 AMB_RS08460: AMB_RS08460 - branched-chain amino acid ABC transporter permease, at 1,811,296 to 1,812,243 _RS08460 AMB_RS08465: AMB_RS08465 - ABC transporter ATP-binding protein, at 1,812,240 to 1,813,001 _RS08465 AMB_RS08470: AMB_RS08470 - ABC transporter ATP-binding protein, at 1,813,013 to 1,813,717 _RS08470 Position (kb) 1812 1813 1814Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1811.380 kb on + strandat 1811.380 kb on + strandat 1811.380 kb on + strandat 1811.380 kb on + strandat 1811.380 kb on + strandat 1811.380 kb on + strandat 1811.380 kb on + strandat 1811.380 kb on + strandat 1811.381 kb on - strandat 1811.381 kb on - strandat 1811.381 kb on - strandat 1811.381 kb on - strandat 1811.381 kb on - strandat 1811.381 kb on - strandat 1811.386 kb on + strandat 1811.386 kb on + strandat 1811.387 kb on - strandat 1811.387 kb on - strandat 1811.387 kb on - strandat 1811.503 kb on + strand, within AMB_RS08460at 1811.629 kb on + strand, within AMB_RS08460at 1811.629 kb on + strand, within AMB_RS08460at 1811.629 kb on + strand, within AMB_RS08460at 1811.629 kb on + strand, within AMB_RS08460at 1811.629 kb on + strand, within AMB_RS08460at 1811.629 kb on + strand, within AMB_RS08460at 1811.630 kb on - strand, within AMB_RS08460at 1811.630 kb on - strand, within AMB_RS08460at 1811.630 kb on - strand, within AMB_RS08460at 1811.630 kb on - strand, within AMB_RS08460at 1811.630 kb on - strand, within AMB_RS08460at 1811.773 kb on + strand, within AMB_RS08460at 1811.774 kb on - strand, within AMB_RS08460at 1811.774 kb on - strand, within AMB_RS08460at 1811.911 kb on + strand, within AMB_RS08460at 1811.911 kb on + strand, within AMB_RS08460at 1811.911 kb on + strand, within AMB_RS08460at 1811.911 kb on + strand, within AMB_RS08460at 1811.911 kb on + strand, within AMB_RS08460at 1811.911 kb on + strand, within AMB_RS08460at 1811.911 kb on + strand, within AMB_RS08460at 1811.912 kb on - strand, within AMB_RS08460at 1811.912 kb on - strand, within AMB_RS08460at 1811.912 kb on - strand, within AMB_RS08460at 1811.912 kb on - strand, within AMB_RS08460at 1811.912 kb on - strand, within AMB_RS08460at 1811.976 kb on + strand, within AMB_RS08460at 1811.976 kb on + strand, within AMB_RS08460at 1811.977 kb on - strand, within AMB_RS08460at 1812.041 kb on + strand, within AMB_RS08460at 1812.041 kb on + strand, within AMB_RS08460at 1812.042 kb on - strand, within AMB_RS08460at 1812.067 kb on + strand, within AMB_RS08460at 1812.067 kb on + strand, within AMB_RS08460at 1812.067 kb on + strand, within AMB_RS08460at 1812.067 kb on + strand, within AMB_RS08460at 1812.067 kb on + strand, within AMB_RS08460at 1812.068 kb on - strand, within AMB_RS08460at 1812.068 kb on - strand, within AMB_RS08460at 1812.068 kb on - strand, within AMB_RS08460at 1812.133 kb on + strand, within AMB_RS08460at 1812.133 kb on + strand, within AMB_RS08460at 1812.133 kb on + strand, within AMB_RS08460at 1812.134 kb on - strand, within AMB_RS08460at 1812.134 kb on - strand, within AMB_RS08460at 1812.134 kb on - strand, within AMB_RS08460at 1812.396 kb on + strand, within AMB_RS08465at 1812.396 kb on + strand, within AMB_RS08465at 1812.396 kb on + strand, within AMB_RS08465at 1812.396 kb on + strand, within AMB_RS08465at 1812.396 kb on + strand, within AMB_RS08465at 1812.396 kb on + strand, within AMB_RS08465at 1812.396 kb on + strand, within AMB_RS08465at 1812.396 kb on + strand, within AMB_RS08465at 1812.397 kb on - strand, within AMB_RS08465at 1812.397 kb on - strand, within AMB_RS08465at 1812.397 kb on - strand, within AMB_RS08465at 1812.456 kb on + strand, within AMB_RS08465at 1812.457 kb on - strand, within AMB_RS08465at 1812.457 kb on - strand, within AMB_RS08465at 1812.630 kb on + strand, within AMB_RS08465at 1812.630 kb on + strand, within AMB_RS08465at 1812.631 kb on - strand, within AMB_RS08465at 1812.631 kb on - strand, within AMB_RS08465at 1812.631 kb on - strand, within AMB_RS08465at 1812.669 kb on + strand, within AMB_RS08465at 1812.669 kb on + strand, within AMB_RS08465at 1812.670 kb on - strand, within AMB_RS08465at 1812.670 kb on - strand, within AMB_RS08465at 1812.700 kb on - strand, within AMB_RS08465at 1812.887 kb on + strand, within AMB_RS08465at 1812.888 kb on - strand, within AMB_RS08465at 1812.981 kb on + strandat 1812.982 kb on - strandat 1813.046 kb on + strandat 1813.046 kb on + strandat 1813.047 kb on - strandat 1813.047 kb on - strandat 1813.047 kb on - strandat 1813.047 kb on - strandat 1813.319 kb on + strand, within AMB_RS08470at 1813.339 kb on + strand, within AMB_RS08470at 1813.364 kb on + strand, within AMB_RS08470at 1813.365 kb on - strand, within AMB_RS08470at 1813.365 kb on - strand, within AMB_RS08470at 1813.365 kb on - strand, within AMB_RS08470at 1813.365 kb on - strand, within AMB_RS08470at 1813.625 kb on + strand, within AMB_RS08470at 1813.626 kb on - strand, within AMB_RS08470at 1813.626 kb on - strand, within AMB_RS08470at 1813.626 kb on - strand, within AMB_RS08470at 1813.626 kb on - strand, within AMB_RS08470at 1813.703 kb on + strandat 1813.703 kb on + strandat 1813.704 kb on - strandat 1813.704 kb on - strandat 1813.704 kb on - strandat 1813.855 kb on - strandat 1813.920 kb on - strandat 1813.920 kb on - strandat 1813.944 kb on - strandat 1813.968 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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1,811,380 + +0.4
1,811,380 + +0.4
1,811,380 + +0.0
1,811,380 + +0.1
1,811,380 + +2.1
1,811,380 + -1.6
1,811,380 + +0.3
1,811,380 + +0.6
1,811,381 - +0.6
1,811,381 - -2.3
1,811,381 - -0.5
1,811,381 - -1.6
1,811,381 - +0.6
1,811,381 - +0.3
1,811,386 + -1.2
1,811,386 + -0.5
1,811,387 - -1.9
1,811,387 - +0.1
1,811,387 - -2.1
1,811,503 + AMB_RS08460 0.22 -0.0
1,811,629 + AMB_RS08460 0.35 +2.1
1,811,629 + AMB_RS08460 0.35 +0.4
1,811,629 + AMB_RS08460 0.35 +0.7
1,811,629 + AMB_RS08460 0.35 -0.5
1,811,629 + AMB_RS08460 0.35 -0.1
1,811,629 + AMB_RS08460 0.35 -1.1
1,811,630 - AMB_RS08460 0.35 -1.6
1,811,630 - AMB_RS08460 0.35 -0.4
1,811,630 - AMB_RS08460 0.35 +1.2
1,811,630 - AMB_RS08460 0.35 +1.9
1,811,630 - AMB_RS08460 0.35 +0.1
1,811,773 + AMB_RS08460 0.50 +0.5
1,811,774 - AMB_RS08460 0.50 -2.0
1,811,774 - AMB_RS08460 0.50 -0.4
1,811,911 + AMB_RS08460 0.65 -0.6
1,811,911 + AMB_RS08460 0.65 +0.6
1,811,911 + AMB_RS08460 0.65 +0.4
1,811,911 + AMB_RS08460 0.65 -1.6
1,811,911 + AMB_RS08460 0.65 +0.5
1,811,911 + AMB_RS08460 0.65 -0.9
1,811,911 + AMB_RS08460 0.65 -0.3
1,811,912 - AMB_RS08460 0.65 +0.4
1,811,912 - AMB_RS08460 0.65 +1.3
1,811,912 - AMB_RS08460 0.65 +2.0
1,811,912 - AMB_RS08460 0.65 -0.5
1,811,912 - AMB_RS08460 0.65 +1.3
1,811,976 + AMB_RS08460 0.72 +0.4
1,811,976 + AMB_RS08460 0.72 +2.8
1,811,977 - AMB_RS08460 0.72 -1.1
1,812,041 + AMB_RS08460 0.79 +0.9
1,812,041 + AMB_RS08460 0.79 +0.9
1,812,042 - AMB_RS08460 0.79 -0.6
1,812,067 + AMB_RS08460 0.81 +0.7
1,812,067 + AMB_RS08460 0.81 +1.3
1,812,067 + AMB_RS08460 0.81 +0.4
1,812,067 + AMB_RS08460 0.81 -2.5
1,812,067 + AMB_RS08460 0.81 +2.4
1,812,068 - AMB_RS08460 0.81 -1.7
1,812,068 - AMB_RS08460 0.81 +0.8
1,812,068 - AMB_RS08460 0.81 -0.4
1,812,133 + AMB_RS08460 0.88 -0.6
1,812,133 + AMB_RS08460 0.88 +0.8
1,812,133 + AMB_RS08460 0.88 +0.6
1,812,134 - AMB_RS08460 0.88 +0.2
1,812,134 - AMB_RS08460 0.88 +1.8
1,812,134 - AMB_RS08460 0.88 -0.8
1,812,396 + AMB_RS08465 0.20 +0.9
1,812,396 + AMB_RS08465 0.20 +0.9
1,812,396 + AMB_RS08465 0.20 +0.7
1,812,396 + AMB_RS08465 0.20 +0.4
1,812,396 + AMB_RS08465 0.20 +1.3
1,812,396 + AMB_RS08465 0.20 +0.5
1,812,396 + AMB_RS08465 0.20 +0.2
1,812,396 + AMB_RS08465 0.20 +0.1
1,812,397 - AMB_RS08465 0.21 +0.5
1,812,397 - AMB_RS08465 0.21 +1.1
1,812,397 - AMB_RS08465 0.21 -0.0
1,812,456 + AMB_RS08465 0.28 +1.3
1,812,457 - AMB_RS08465 0.28 -0.4
1,812,457 - AMB_RS08465 0.28 +0.3
1,812,630 + AMB_RS08465 0.51 +0.2
1,812,630 + AMB_RS08465 0.51 +0.5
1,812,631 - AMB_RS08465 0.51 -0.1
1,812,631 - AMB_RS08465 0.51 +0.9
1,812,631 - AMB_RS08465 0.51 -0.0
1,812,669 + AMB_RS08465 0.56 -0.9
1,812,669 + AMB_RS08465 0.56 -1.3
1,812,670 - AMB_RS08465 0.56 +1.2
1,812,670 - AMB_RS08465 0.56 +1.4
1,812,700 - AMB_RS08465 0.60 -0.7
1,812,887 + AMB_RS08465 0.85 -0.1
1,812,888 - AMB_RS08465 0.85 -0.1
1,812,981 + -0.1
1,812,982 - +0.8
1,813,046 + -0.8
1,813,046 + +0.7
1,813,047 - -2.6
1,813,047 - +0.2
1,813,047 - +0.1
1,813,047 - -0.4
1,813,319 + AMB_RS08470 0.43 +0.4
1,813,339 + AMB_RS08470 0.46 +1.4
1,813,364 + AMB_RS08470 0.50 -0.6
1,813,365 - AMB_RS08470 0.50 -1.1
1,813,365 - AMB_RS08470 0.50 +0.8
1,813,365 - AMB_RS08470 0.50 +0.4
1,813,365 - AMB_RS08470 0.50 -0.7
1,813,625 + AMB_RS08470 0.87 +0.3
1,813,626 - AMB_RS08470 0.87 +1.7
1,813,626 - AMB_RS08470 0.87 +0.7
1,813,626 - AMB_RS08470 0.87 -1.4
1,813,626 - AMB_RS08470 0.87 +2.1
1,813,703 + -2.4
1,813,703 + +1.6
1,813,704 - -1.4
1,813,704 - +0.0
1,813,704 - -0.7
1,813,855 - +0.5
1,813,920 - -0.0
1,813,920 - +0.3
1,813,944 - -0.3
1,813,968 + +0.4

Or see this region's nucleotide sequence