Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07710

Experiment: 150_nonmag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS07690 and AMB_RS07695 overlap by 4 nucleotidesAMB_RS07695 and AMB_RS07700 overlap by 56 nucleotidesAMB_RS07700 and AMB_RS07705 are separated by 148 nucleotidesAMB_RS07705 and AMB_RS07710 are separated by 123 nucleotidesAMB_RS07710 and AMB_RS07715 are separated by 15 nucleotidesAMB_RS07715 and AMB_RS07720 overlap by 23 nucleotides AMB_RS07690: AMB_RS07690 - lysozyme, at 1,656,473 to 1,656,961 _RS07690 AMB_RS07695: AMB_RS07695 - hypothetical protein, at 1,656,958 to 1,657,440 _RS07695 AMB_RS07700: AMB_RS07700 - hypothetical protein, at 1,657,385 to 1,657,570 _RS07700 AMB_RS07705: AMB_RS07705 - tRNA-Thr, at 1,657,719 to 1,657,794 _RS07705 AMB_RS07710: AMB_RS07710 - hypothetical protein, at 1,657,918 to 1,658,124 _RS07710 AMB_RS07715: AMB_RS07715 - deoxycytidine triphosphate deaminase, at 1,658,140 to 1,658,694 _RS07715 AMB_RS07720: AMB_RS07720 - hypothetical protein, at 1,658,672 to 1,660,207 _RS07720 Position (kb) 1657 1658 1659Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1656.957 kb on + strandat 1656.958 kb on - strandat 1657.063 kb on + strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.064 kb on - strand, within AMB_RS07695at 1657.098 kb on + strand, within AMB_RS07695at 1657.255 kb on - strand, within AMB_RS07695at 1657.493 kb on + strand, within AMB_RS07700at 1657.493 kb on + strand, within AMB_RS07700at 1657.493 kb on + strand, within AMB_RS07700at 1657.494 kb on - strand, within AMB_RS07700at 1657.494 kb on - strand, within AMB_RS07700at 1657.657 kb on + strandat 1657.658 kb on - strandat 1657.838 kb on - strandat 1658.105 kb on + strandat 1658.106 kb on - strandat 1658.239 kb on + strand, within AMB_RS07715at 1658.240 kb on - strand, within AMB_RS07715at 1658.254 kb on + strand, within AMB_RS07715at 1658.254 kb on + strand, within AMB_RS07715at 1658.255 kb on - strand, within AMB_RS07715at 1658.261 kb on - strand, within AMB_RS07715at 1658.261 kb on - strand, within AMB_RS07715at 1658.368 kb on - strand, within AMB_RS07715at 1658.368 kb on - strand, within AMB_RS07715at 1658.416 kb on + strand, within AMB_RS07715at 1658.467 kb on + strand, within AMB_RS07715at 1658.467 kb on + strand, within AMB_RS07715at 1658.467 kb on + strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.573 kb on - strand, within AMB_RS07715at 1658.573 kb on - strand, within AMB_RS07715at 1658.635 kb on + strand, within AMB_RS07715at 1658.635 kb on + strand, within AMB_RS07715at 1658.635 kb on + strand, within AMB_RS07715at 1658.636 kb on - strand, within AMB_RS07715at 1658.656 kb on + strandat 1658.656 kb on + strandat 1658.656 kb on + strandat 1658.657 kb on - strandat 1658.657 kb on - strandat 1658.657 kb on - strandat 1658.770 kb on + strandat 1658.770 kb on + strandat 1658.770 kb on + strandat 1658.771 kb on - strandat 1658.918 kb on + strand, within AMB_RS07720at 1658.918 kb on + strand, within AMB_RS07720at 1658.918 kb on + strand, within AMB_RS07720at 1658.919 kb on - strand, within AMB_RS07720at 1658.919 kb on - strand, within AMB_RS07720at 1658.919 kb on - strand, within AMB_RS07720

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
remove
1,656,957 + +0.2
1,656,958 - -0.4
1,657,063 + AMB_RS07695 0.22 +0.0
1,657,064 - AMB_RS07695 0.22 -2.9
1,657,064 - AMB_RS07695 0.22 +1.2
1,657,064 - AMB_RS07695 0.22 +0.1
1,657,064 - AMB_RS07695 0.22 -1.1
1,657,064 - AMB_RS07695 0.22 -1.4
1,657,064 - AMB_RS07695 0.22 -2.5
1,657,064 - AMB_RS07695 0.22 +1.4
1,657,098 + AMB_RS07695 0.29 +1.1
1,657,255 - AMB_RS07695 0.61 -0.5
1,657,493 + AMB_RS07700 0.58 -0.1
1,657,493 + AMB_RS07700 0.58 -0.8
1,657,493 + AMB_RS07700 0.58 -1.0
1,657,494 - AMB_RS07700 0.59 -0.1
1,657,494 - AMB_RS07700 0.59 -1.0
1,657,657 + -0.6
1,657,658 - -0.1
1,657,838 - -1.4
1,658,105 + -1.0
1,658,106 - -0.2
1,658,239 + AMB_RS07715 0.18 -0.8
1,658,240 - AMB_RS07715 0.18 -0.6
1,658,254 + AMB_RS07715 0.21 -2.4
1,658,254 + AMB_RS07715 0.21 -0.3
1,658,255 - AMB_RS07715 0.21 -0.1
1,658,261 - AMB_RS07715 0.22 -1.1
1,658,261 - AMB_RS07715 0.22 +0.3
1,658,368 - AMB_RS07715 0.41 -3.6
1,658,368 - AMB_RS07715 0.41 +1.5
1,658,416 + AMB_RS07715 0.50 -0.5
1,658,467 + AMB_RS07715 0.59 -0.4
1,658,467 + AMB_RS07715 0.59 -0.4
1,658,467 + AMB_RS07715 0.59 -2.1
1,658,468 - AMB_RS07715 0.59 +0.3
1,658,468 - AMB_RS07715 0.59 -0.1
1,658,468 - AMB_RS07715 0.59 +0.5
1,658,468 - AMB_RS07715 0.59 -0.2
1,658,468 - AMB_RS07715 0.59 +0.3
1,658,468 - AMB_RS07715 0.59 +0.1
1,658,468 - AMB_RS07715 0.59 +0.4
1,658,573 - AMB_RS07715 0.78 -1.4
1,658,573 - AMB_RS07715 0.78 +0.7
1,658,635 + AMB_RS07715 0.89 -1.6
1,658,635 + AMB_RS07715 0.89 -0.2
1,658,635 + AMB_RS07715 0.89 +0.5
1,658,636 - AMB_RS07715 0.89 +1.2
1,658,656 + +3.0
1,658,656 + -1.9
1,658,656 + +0.4
1,658,657 - +0.3
1,658,657 - -0.8
1,658,657 - -0.4
1,658,770 + -1.1
1,658,770 + +0.4
1,658,770 + +0.2
1,658,771 - +0.8
1,658,918 + AMB_RS07720 0.16 +2.8
1,658,918 + AMB_RS07720 0.16 -0.7
1,658,918 + AMB_RS07720 0.16 +2.9
1,658,919 - AMB_RS07720 0.16 +0.2
1,658,919 - AMB_RS07720 0.16 -0.8
1,658,919 - AMB_RS07720 0.16 +0.8

Or see this region's nucleotide sequence