Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06645

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06635 and AMB_RS06640 are separated by 4 nucleotidesAMB_RS06640 and AMB_RS06645 are separated by 20 nucleotidesAMB_RS06645 and AMB_RS06650 are separated by 4 nucleotidesAMB_RS06650 and AMB_RS06655 overlap by 4 nucleotides AMB_RS06635: AMB_RS06635 - ParA family protein, at 1,425,052 to 1,425,696 _RS06635 AMB_RS06640: AMB_RS06640 - integral membrane protein, at 1,425,701 to 1,426,186 _RS06640 AMB_RS06645: AMB_RS06645 - NUDIX domain-containing protein, at 1,426,207 to 1,426,815 _RS06645 AMB_RS06650: AMB_RS06650 - membrane protein, at 1,426,820 to 1,427,440 _RS06650 AMB_RS06655: AMB_RS06655 - spore maturation protein, at 1,427,437 to 1,428,672 _RS06655 Position (kb) 1426 1427Strain fitness (log2 ratio) -3 -2 -1 0 1at 1425.725 kb on + strandat 1425.726 kb on - strandat 1425.726 kb on - strandat 1425.858 kb on + strand, within AMB_RS06640at 1425.858 kb on + strand, within AMB_RS06640at 1425.859 kb on - strand, within AMB_RS06640at 1426.013 kb on + strand, within AMB_RS06640at 1426.014 kb on - strand, within AMB_RS06640at 1426.014 kb on - strand, within AMB_RS06640at 1426.014 kb on - strand, within AMB_RS06640at 1426.092 kb on - strand, within AMB_RS06640at 1426.261 kb on + strandat 1426.373 kb on - strand, within AMB_RS06645at 1426.373 kb on - strand, within AMB_RS06645at 1426.373 kb on - strand, within AMB_RS06645at 1426.427 kb on - strand, within AMB_RS06645at 1426.427 kb on - strand, within AMB_RS06645at 1426.567 kb on + strand, within AMB_RS06645at 1426.610 kb on - strand, within AMB_RS06645at 1426.610 kb on - strand, within AMB_RS06645at 1426.914 kb on + strand, within AMB_RS06650at 1427.558 kb on + strandat 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.573 kb on + strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.574 kb on - strand, within AMB_RS06655at 1427.597 kb on + strand, within AMB_RS06655at 1427.597 kb on + strand, within AMB_RS06655at 1427.598 kb on - strand, within AMB_RS06655at 1427.598 kb on - strand, within AMB_RS06655at 1427.624 kb on + strand, within AMB_RS06655at 1427.624 kb on + strand, within AMB_RS06655at 1427.625 kb on - strand, within AMB_RS06655at 1427.625 kb on - strand, within AMB_RS06655at 1427.625 kb on - strand, within AMB_RS06655at 1427.676 kb on - strand, within AMB_RS06655

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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1,425,725 + +0.9
1,425,726 - -0.2
1,425,726 - -0.3
1,425,858 + AMB_RS06640 0.32 +0.2
1,425,858 + AMB_RS06640 0.32 +0.3
1,425,859 - AMB_RS06640 0.33 -0.4
1,426,013 + AMB_RS06640 0.64 +0.4
1,426,014 - AMB_RS06640 0.64 -1.2
1,426,014 - AMB_RS06640 0.64 -0.3
1,426,014 - AMB_RS06640 0.64 +0.4
1,426,092 - AMB_RS06640 0.80 +0.4
1,426,261 + -3.3
1,426,373 - AMB_RS06645 0.27 -0.5
1,426,373 - AMB_RS06645 0.27 -2.8
1,426,373 - AMB_RS06645 0.27 -1.6
1,426,427 - AMB_RS06645 0.36 -0.3
1,426,427 - AMB_RS06645 0.36 -0.2
1,426,567 + AMB_RS06645 0.59 -0.7
1,426,610 - AMB_RS06645 0.66 +0.3
1,426,610 - AMB_RS06645 0.66 -0.7
1,426,914 + AMB_RS06650 0.15 -1.2
1,427,558 + +0.6
1,427,573 + AMB_RS06655 0.11 +0.2
1,427,573 + AMB_RS06655 0.11 -0.1
1,427,573 + AMB_RS06655 0.11 +0.7
1,427,573 + AMB_RS06655 0.11 +0.4
1,427,573 + AMB_RS06655 0.11 +0.4
1,427,573 + AMB_RS06655 0.11 +0.4
1,427,573 + AMB_RS06655 0.11 -0.5
1,427,574 - AMB_RS06655 0.11 -0.2
1,427,574 - AMB_RS06655 0.11 -0.0
1,427,574 - AMB_RS06655 0.11 -0.7
1,427,574 - AMB_RS06655 0.11 +1.0
1,427,574 - AMB_RS06655 0.11 -0.1
1,427,574 - AMB_RS06655 0.11 +0.4
1,427,574 - AMB_RS06655 0.11 -0.8
1,427,574 - AMB_RS06655 0.11 +1.6
1,427,597 + AMB_RS06655 0.13 -2.7
1,427,597 + AMB_RS06655 0.13 -0.5
1,427,598 - AMB_RS06655 0.13 -0.7
1,427,598 - AMB_RS06655 0.13 -0.7
1,427,624 + AMB_RS06655 0.15 +0.3
1,427,624 + AMB_RS06655 0.15 +1.0
1,427,625 - AMB_RS06655 0.15 -0.5
1,427,625 - AMB_RS06655 0.15 -0.5
1,427,625 - AMB_RS06655 0.15 -1.1
1,427,676 - AMB_RS06655 0.19 -0.3

Or see this region's nucleotide sequence