Experiment: 150_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04455 and AMB_RS04460 are separated by 76 nucleotides AMB_RS04460 and AMB_RS04465 are separated by 112 nucleotides AMB_RS04465 and AMB_RS04470 overlap by 4 nucleotides AMB_RS04470 and AMB_RS04475 are separated by 61 nucleotides
AMB_RS04455: AMB_RS04455 - energy-dependent translational throttle protein EttA, at 933,640 to 935,319
_RS04455
AMB_RS04460: AMB_RS04460 - hypothetical protein, at 935,396 to 935,791
_RS04460
AMB_RS04465: AMB_RS04465 - ribonuclease R, at 935,904 to 938,132
_RS04465
AMB_RS04470: AMB_RS04470 - antibiotic acetyltransferase, at 938,129 to 938,812
_RS04470
AMB_RS04475: AMB_RS04475 - S41 family peptidase, at 938,874 to 940,430
_RS04475
Position (kb) 935
936
937
938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 935.096 kb on + strand, within AMB_RS04455 at 935.096 kb on + strand, within AMB_RS04455 at 935.097 kb on - strand, within AMB_RS04455 at 935.097 kb on - strand, within AMB_RS04455 at 935.138 kb on + strand, within AMB_RS04455 at 935.139 kb on - strand, within AMB_RS04455 at 935.270 kb on + strand at 935.297 kb on + strand at 935.297 kb on + strand at 935.297 kb on + strand at 935.297 kb on + strand at 935.297 kb on + strand at 935.297 kb on + strand at 935.297 kb on + strand at 935.297 kb on + strand at 935.297 kb on + strand at 935.297 kb on + strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.298 kb on - strand at 935.303 kb on + strand at 935.303 kb on + strand at 935.303 kb on + strand at 935.303 kb on + strand at 935.303 kb on + strand at 935.303 kb on + strand at 935.303 kb on + strand at 935.303 kb on + strand at 935.304 kb on - strand at 935.304 kb on - strand at 935.304 kb on - strand at 935.304 kb on - strand at 935.304 kb on - strand at 935.309 kb on + strand at 935.309 kb on + strand at 935.309 kb on + strand at 935.310 kb on - strand at 935.310 kb on - strand at 935.310 kb on - strand at 935.310 kb on - strand at 935.361 kb on + strand at 935.582 kb on + strand, within AMB_RS04460 at 935.711 kb on + strand, within AMB_RS04460 at 935.774 kb on + strand at 935.774 kb on + strand at 935.775 kb on - strand at 935.775 kb on - strand at 935.890 kb on + strand at 935.891 kb on - strand at 935.891 kb on - strand at 935.892 kb on + strand at 935.893 kb on - strand at 936.190 kb on - strand, within AMB_RS04465 at 936.190 kb on - strand, within AMB_RS04465 at 936.190 kb on - strand, within AMB_RS04465 at 936.309 kb on + strand, within AMB_RS04465 at 936.309 kb on + strand, within AMB_RS04465 at 936.309 kb on + strand, within AMB_RS04465 at 936.309 kb on + strand, within AMB_RS04465 at 936.310 kb on - strand, within AMB_RS04465 at 936.310 kb on - strand, within AMB_RS04465 at 936.429 kb on + strand, within AMB_RS04465 at 936.429 kb on + strand, within AMB_RS04465 at 936.429 kb on + strand, within AMB_RS04465 at 936.429 kb on + strand, within AMB_RS04465 at 936.429 kb on + strand, within AMB_RS04465 at 936.430 kb on - strand, within AMB_RS04465 at 936.430 kb on - strand, within AMB_RS04465 at 936.430 kb on - strand, within AMB_RS04465 at 936.430 kb on - strand, within AMB_RS04465 at 936.430 kb on - strand, within AMB_RS04465 at 936.430 kb on - strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.431 kb on + strand, within AMB_RS04465 at 936.432 kb on - strand, within AMB_RS04465 at 936.432 kb on - strand, within AMB_RS04465 at 936.432 kb on - strand, within AMB_RS04465 at 936.432 kb on - strand, within AMB_RS04465 at 936.432 kb on - strand, within AMB_RS04465 at 936.432 kb on - strand, within AMB_RS04465 at 936.432 kb on - strand, within AMB_RS04465 at 936.432 kb on - strand, within AMB_RS04465 at 936.507 kb on + strand, within AMB_RS04465 at 936.508 kb on - strand, within AMB_RS04465 at 936.508 kb on - strand, within AMB_RS04465 at 936.583 kb on + strand, within AMB_RS04465 at 936.583 kb on + strand, within AMB_RS04465 at 936.583 kb on + strand, within AMB_RS04465 at 936.583 kb on + strand, within AMB_RS04465 at 936.583 kb on + strand, within AMB_RS04465 at 936.583 kb on + strand, within AMB_RS04465 at 936.584 kb on - strand, within AMB_RS04465 at 936.584 kb on - strand, within AMB_RS04465 at 936.584 kb on - strand, within AMB_RS04465 at 936.584 kb on - strand, within AMB_RS04465 at 936.584 kb on - strand, within AMB_RS04465 at 936.584 kb on - strand, within AMB_RS04465 at 936.813 kb on + strand, within AMB_RS04465 at 936.813 kb on + strand, within AMB_RS04465 at 936.814 kb on - strand, within AMB_RS04465 at 936.870 kb on + strand, within AMB_RS04465 at 936.871 kb on - strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.047 kb on + strand, within AMB_RS04465 at 937.048 kb on - strand, within AMB_RS04465 at 937.048 kb on - strand, within AMB_RS04465 at 937.128 kb on + strand, within AMB_RS04465 at 937.128 kb on + strand, within AMB_RS04465 at 937.344 kb on + strand, within AMB_RS04465 at 937.344 kb on + strand, within AMB_RS04465 at 937.345 kb on - strand, within AMB_RS04465 at 937.345 kb on - strand, within AMB_RS04465 at 937.345 kb on - strand, within AMB_RS04465 at 937.345 kb on - strand, within AMB_RS04465 at 937.539 kb on + strand, within AMB_RS04465 at 937.539 kb on + strand, within AMB_RS04465 at 937.539 kb on + strand, within AMB_RS04465 at 937.540 kb on - strand, within AMB_RS04465 at 937.540 kb on - strand, within AMB_RS04465 at 937.540 kb on - strand, within AMB_RS04465 at 937.553 kb on + strand, within AMB_RS04465 at 937.554 kb on - strand, within AMB_RS04465 at 937.584 kb on + strand, within AMB_RS04465 at 937.585 kb on - strand, within AMB_RS04465 at 937.585 kb on - strand, within AMB_RS04465 at 937.585 kb on - strand, within AMB_RS04465 at 937.585 kb on - strand, within AMB_RS04465 at 937.614 kb on + strand, within AMB_RS04465 at 937.614 kb on + strand, within AMB_RS04465 at 937.615 kb on - strand, within AMB_RS04465 at 937.615 kb on - strand, within AMB_RS04465 at 937.615 kb on - strand, within AMB_RS04465 at 937.773 kb on + strand, within AMB_RS04465 at 937.773 kb on + strand, within AMB_RS04465 at 937.773 kb on + strand, within AMB_RS04465 at 937.774 kb on - strand, within AMB_RS04465 at 937.917 kb on + strand at 937.917 kb on + strand at 937.918 kb on - strand at 938.015 kb on + strand at 938.016 kb on - strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.169 kb on - strand at 938.169 kb on - strand at 938.169 kb on - strand at 938.297 kb on + strand, within AMB_RS04470 at 938.298 kb on - strand, within AMB_RS04470 at 938.298 kb on - strand, within AMB_RS04470 at 938.298 kb on - strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.351 kb on + strand, within AMB_RS04470 at 938.622 kb on - strand, within AMB_RS04470 at 938.622 kb on - strand, within AMB_RS04470 at 938.821 kb on + strand at 938.822 kb on - strand at 938.845 kb on + strand at 938.845 kb on + strand at 938.845 kb on + strand at 938.845 kb on + strand at 938.845 kb on + strand at 938.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_3 remove 935,096 + AMB_RS04455 0.87 -0.8 935,096 + AMB_RS04455 0.87 -0.9 935,097 - AMB_RS04455 0.87 -1.1 935,097 - AMB_RS04455 0.87 +1.5 935,138 + AMB_RS04455 0.89 +0.5 935,139 - AMB_RS04455 0.89 +0.1 935,270 + -0.4 935,297 + +0.1 935,297 + +0.7 935,297 + -2.4 935,297 + -2.7 935,297 + +0.8 935,297 + -0.6 935,297 + +0.4 935,297 + -3.0 935,297 + +0.1 935,297 + +0.4 935,298 - -1.0 935,298 - -0.1 935,298 - -2.7 935,298 - -0.6 935,298 - -1.9 935,298 - -0.1 935,298 - +0.4 935,298 - +0.7 935,298 - +1.0 935,298 - -0.7 935,298 - -0.2 935,298 - +0.6 935,298 - -0.8 935,303 + +0.4 935,303 + +0.1 935,303 + -0.4 935,303 + -1.6 935,303 + +0.2 935,303 + -0.9 935,303 + +0.7 935,303 + -1.6 935,304 - +0.6 935,304 - +0.4 935,304 - +0.4 935,304 - +1.1 935,304 - -0.4 935,309 + -0.1 935,309 + +0.7 935,309 + -1.4 935,310 - +0.2 935,310 - +1.0 935,310 - +0.4 935,310 - +0.6 935,361 + +0.9 935,582 + AMB_RS04460 0.47 -1.7 935,711 + AMB_RS04460 0.80 -0.3 935,774 + +0.4 935,774 + -0.7 935,775 - -0.2 935,775 - -0.6 935,890 + -3.4 935,891 - -0.1 935,891 - -0.8 935,892 + -0.8 935,893 - -0.6 936,190 - AMB_RS04465 0.13 +1.0 936,190 - AMB_RS04465 0.13 -0.3 936,190 - AMB_RS04465 0.13 -1.9 936,309 + AMB_RS04465 0.18 -1.8 936,309 + AMB_RS04465 0.18 -0.6 936,309 + AMB_RS04465 0.18 -1.1 936,309 + AMB_RS04465 0.18 -0.5 936,310 - AMB_RS04465 0.18 -0.2 936,310 - AMB_RS04465 0.18 -0.3 936,429 + AMB_RS04465 0.24 -0.5 936,429 + AMB_RS04465 0.24 -0.0 936,429 + AMB_RS04465 0.24 +1.6 936,429 + AMB_RS04465 0.24 +0.7 936,429 + AMB_RS04465 0.24 -1.4 936,430 - AMB_RS04465 0.24 -0.6 936,430 - AMB_RS04465 0.24 +1.0 936,430 - AMB_RS04465 0.24 -0.9 936,430 - AMB_RS04465 0.24 +0.1 936,430 - AMB_RS04465 0.24 -1.2 936,430 - AMB_RS04465 0.24 -0.6 936,431 + AMB_RS04465 0.24 -2.7 936,431 + AMB_RS04465 0.24 +0.3 936,431 + AMB_RS04465 0.24 -0.1 936,431 + AMB_RS04465 0.24 +1.4 936,431 + AMB_RS04465 0.24 -1.4 936,431 + AMB_RS04465 0.24 -0.1 936,431 + AMB_RS04465 0.24 -0.5 936,431 + AMB_RS04465 0.24 -2.0 936,431 + AMB_RS04465 0.24 -2.6 936,431 + AMB_RS04465 0.24 -0.3 936,432 - AMB_RS04465 0.24 +1.0 936,432 - AMB_RS04465 0.24 +0.3 936,432 - AMB_RS04465 0.24 +0.6 936,432 - AMB_RS04465 0.24 -1.3 936,432 - AMB_RS04465 0.24 +0.7 936,432 - AMB_RS04465 0.24 -2.6 936,432 - AMB_RS04465 0.24 -0.2 936,432 - AMB_RS04465 0.24 -0.3 936,507 + AMB_RS04465 0.27 +0.0 936,508 - AMB_RS04465 0.27 -1.7 936,508 - AMB_RS04465 0.27 -1.0 936,583 + AMB_RS04465 0.30 -0.7 936,583 + AMB_RS04465 0.30 -3.0 936,583 + AMB_RS04465 0.30 -0.3 936,583 + AMB_RS04465 0.30 -0.9 936,583 + AMB_RS04465 0.30 +0.4 936,583 + AMB_RS04465 0.30 +0.8 936,584 - AMB_RS04465 0.31 -0.4 936,584 - AMB_RS04465 0.31 +0.8 936,584 - AMB_RS04465 0.31 -1.2 936,584 - AMB_RS04465 0.31 -0.3 936,584 - AMB_RS04465 0.31 +0.8 936,584 - AMB_RS04465 0.31 -0.2 936,813 + AMB_RS04465 0.41 -0.5 936,813 + AMB_RS04465 0.41 -2.7 936,814 - AMB_RS04465 0.41 -1.6 936,870 + AMB_RS04465 0.43 -1.1 936,871 - AMB_RS04465 0.43 -1.3 937,047 + AMB_RS04465 0.51 -1.1 937,047 + AMB_RS04465 0.51 -0.2 937,047 + AMB_RS04465 0.51 -2.4 937,047 + AMB_RS04465 0.51 +1.2 937,047 + AMB_RS04465 0.51 -1.3 937,047 + AMB_RS04465 0.51 -0.4 937,047 + AMB_RS04465 0.51 -0.4 937,047 + AMB_RS04465 0.51 -0.3 937,047 + AMB_RS04465 0.51 -1.6 937,047 + AMB_RS04465 0.51 -0.1 937,047 + AMB_RS04465 0.51 -2.1 937,048 - AMB_RS04465 0.51 -0.2 937,048 - AMB_RS04465 0.51 -0.1 937,128 + AMB_RS04465 0.55 -0.7 937,128 + AMB_RS04465 0.55 -0.9 937,344 + AMB_RS04465 0.65 -0.1 937,344 + AMB_RS04465 0.65 -1.9 937,345 - AMB_RS04465 0.65 -1.1 937,345 - AMB_RS04465 0.65 -1.9 937,345 - AMB_RS04465 0.65 -0.8 937,345 - AMB_RS04465 0.65 -0.5 937,539 + AMB_RS04465 0.73 -0.6 937,539 + AMB_RS04465 0.73 -3.1 937,539 + AMB_RS04465 0.73 -0.5 937,540 - AMB_RS04465 0.73 -0.5 937,540 - AMB_RS04465 0.73 -0.3 937,540 - AMB_RS04465 0.73 -1.4 937,553 + AMB_RS04465 0.74 +0.3 937,554 - AMB_RS04465 0.74 -2.6 937,584 + AMB_RS04465 0.75 -0.5 937,585 - AMB_RS04465 0.75 -0.5 937,585 - AMB_RS04465 0.75 -2.7 937,585 - AMB_RS04465 0.75 +0.3 937,585 - AMB_RS04465 0.75 -1.1 937,614 + AMB_RS04465 0.77 +0.2 937,614 + AMB_RS04465 0.77 -1.6 937,615 - AMB_RS04465 0.77 -0.2 937,615 - AMB_RS04465 0.77 -0.7 937,615 - AMB_RS04465 0.77 -1.9 937,773 + AMB_RS04465 0.84 -0.4 937,773 + AMB_RS04465 0.84 -3.1 937,773 + AMB_RS04465 0.84 -0.2 937,774 - AMB_RS04465 0.84 -1.1 937,917 + -0.3 937,917 + -0.0 937,918 - -0.9 938,015 + -2.1 938,016 - -0.1 938,168 + +0.1 938,168 + -0.2 938,168 + +0.4 938,168 + -0.3 938,168 + +0.0 938,168 + +0.0 938,169 - +0.3 938,169 - +0.7 938,169 - -0.2 938,297 + AMB_RS04470 0.25 -0.1 938,298 - AMB_RS04470 0.25 +0.4 938,298 - AMB_RS04470 0.25 -0.3 938,298 - AMB_RS04470 0.25 -0.4 938,303 + AMB_RS04470 0.25 -0.4 938,303 + AMB_RS04470 0.25 -0.0 938,303 + AMB_RS04470 0.25 +0.3 938,303 + AMB_RS04470 0.25 -0.2 938,303 + AMB_RS04470 0.25 -0.0 938,303 + AMB_RS04470 0.25 -0.1 938,303 + AMB_RS04470 0.25 +1.4 938,303 + AMB_RS04470 0.25 -0.4 938,303 + AMB_RS04470 0.25 -1.3 938,303 + AMB_RS04470 0.25 +0.1 938,303 + AMB_RS04470 0.25 -0.2 938,303 + AMB_RS04470 0.25 -2.4 938,304 - AMB_RS04470 0.26 +1.0 938,304 - AMB_RS04470 0.26 -0.1 938,304 - AMB_RS04470 0.26 -0.2 938,304 - AMB_RS04470 0.26 -0.1 938,304 - AMB_RS04470 0.26 -1.0 938,305 + AMB_RS04470 0.26 -0.4 938,305 + AMB_RS04470 0.26 +1.4 938,305 + AMB_RS04470 0.26 +0.3 938,305 + AMB_RS04470 0.26 +0.7 938,305 + AMB_RS04470 0.26 -0.2 938,306 - AMB_RS04470 0.26 +0.6 938,306 - AMB_RS04470 0.26 -0.3 938,306 - AMB_RS04470 0.26 +0.1 938,306 - AMB_RS04470 0.26 -0.7 938,306 - AMB_RS04470 0.26 +1.0 938,306 - AMB_RS04470 0.26 -1.7 938,306 - AMB_RS04470 0.26 -0.3 938,351 + AMB_RS04470 0.32 +0.2 938,622 - AMB_RS04470 0.72 +0.1 938,622 - AMB_RS04470 0.72 +0.3 938,821 + -0.1 938,822 - +0.1 938,845 + -0.4 938,845 + -1.6 938,845 + +0.1 938,845 + -1.3 938,845 + -1.7 938,846 - -1.1
Or see this region's nucleotide sequence