Experiment: 150_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04425 and AMB_RS04430 are separated by 26 nucleotides AMB_RS04430 and AMB_RS04435 are separated by 234 nucleotides AMB_RS04435 and AMB_RS04440 are separated by 177 nucleotides AMB_RS04440 and AMB_RS04445 are separated by 24 nucleotides AMB_RS04445 and AMB_RS04450 are separated by 84 nucleotides
AMB_RS04425: AMB_RS04425 - low molecular weight phosphotyrosine protein phosphatase, at 929,059 to 929,532
_RS04425
AMB_RS04430: AMB_RS04430 - hypothetical protein, at 929,559 to 930,002
_RS04430
AMB_RS04435: AMB_RS04435 - hypothetical protein, at 930,237 to 931,745
_RS04435
AMB_RS04440: AMB_RS04440 - hypothetical protein, at 931,923 to 932,114
_RS04440
AMB_RS04445: AMB_RS04445 - CBS domain-containing protein, at 932,139 to 932,579
_RS04445
AMB_RS04450: AMB_RS04450 - ankyrin repeat domain-containing protein, at 932,664 to 933,629
_RS04450
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 929.249 kb on - strand, within AMB_RS04425 at 929.249 kb on - strand, within AMB_RS04425 at 929.438 kb on - strand, within AMB_RS04425 at 929.438 kb on - strand, within AMB_RS04425 at 929.531 kb on - strand at 929.538 kb on + strand at 929.538 kb on + strand at 929.548 kb on - strand at 929.584 kb on + strand at 929.584 kb on + strand at 929.584 kb on + strand at 929.585 kb on - strand at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.881 kb on + strand, within AMB_RS04430 at 929.881 kb on + strand, within AMB_RS04430 at 929.881 kb on + strand, within AMB_RS04430 at 929.882 kb on - strand, within AMB_RS04430 at 929.894 kb on - strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 930.006 kb on + strand at 930.007 kb on - strand at 930.007 kb on - strand at 930.117 kb on + strand at 930.137 kb on + strand at 930.138 kb on - strand at 930.138 kb on - strand at 930.320 kb on + strand at 930.321 kb on - strand at 930.507 kb on + strand, within AMB_RS04435 at 930.508 kb on - strand, within AMB_RS04435 at 930.508 kb on - strand, within AMB_RS04435 at 930.568 kb on - strand, within AMB_RS04435 at 930.643 kb on + strand, within AMB_RS04435 at 930.644 kb on - strand, within AMB_RS04435 at 930.644 kb on - strand, within AMB_RS04435 at 930.777 kb on + strand, within AMB_RS04435 at 930.778 kb on - strand, within AMB_RS04435 at 930.778 kb on - strand, within AMB_RS04435 at 930.822 kb on + strand, within AMB_RS04435 at 930.822 kb on + strand, within AMB_RS04435 at 930.822 kb on + strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.823 kb on - strand, within AMB_RS04435 at 930.824 kb on + strand, within AMB_RS04435 at 930.825 kb on - strand, within AMB_RS04435 at 930.825 kb on - strand, within AMB_RS04435 at 931.113 kb on + strand, within AMB_RS04435 at 931.113 kb on + strand, within AMB_RS04435 at 931.113 kb on + strand, within AMB_RS04435 at 931.121 kb on + strand, within AMB_RS04435 at 931.121 kb on + strand, within AMB_RS04435 at 931.278 kb on + strand, within AMB_RS04435 at 931.278 kb on + strand, within AMB_RS04435 at 931.278 kb on + strand, within AMB_RS04435 at 931.279 kb on - strand, within AMB_RS04435 at 931.279 kb on - strand, within AMB_RS04435 at 931.279 kb on - strand, within AMB_RS04435 at 931.303 kb on + strand, within AMB_RS04435 at 931.303 kb on + strand, within AMB_RS04435 at 931.303 kb on + strand, within AMB_RS04435 at 931.303 kb on + strand, within AMB_RS04435 at 931.304 kb on - strand, within AMB_RS04435 at 931.304 kb on - strand, within AMB_RS04435 at 931.392 kb on + strand, within AMB_RS04435 at 931.392 kb on + strand, within AMB_RS04435 at 931.392 kb on + strand, within AMB_RS04435 at 931.393 kb on - strand, within AMB_RS04435 at 931.393 kb on - strand, within AMB_RS04435 at 931.393 kb on - strand, within AMB_RS04435 at 931.393 kb on - strand, within AMB_RS04435 at 931.455 kb on + strand, within AMB_RS04435 at 931.455 kb on + strand, within AMB_RS04435 at 931.456 kb on - strand, within AMB_RS04435 at 931.456 kb on - strand, within AMB_RS04435 at 931.479 kb on + strand, within AMB_RS04435 at 931.479 kb on + strand, within AMB_RS04435 at 931.479 kb on + strand, within AMB_RS04435 at 931.480 kb on - strand, within AMB_RS04435 at 931.480 kb on - strand, within AMB_RS04435 at 931.480 kb on - strand, within AMB_RS04435 at 931.611 kb on + strand at 931.611 kb on + strand at 931.612 kb on - strand at 931.623 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.864 kb on + strand at 931.889 kb on + strand at 931.889 kb on + strand at 931.890 kb on - strand at 931.890 kb on - strand at 931.890 kb on - strand at 931.890 kb on - strand at 931.890 kb on - strand at 931.920 kb on + strand at 931.986 kb on + strand, within AMB_RS04440 at 932.112 kb on + strand at 932.158 kb on + strand at 932.159 kb on - strand at 932.668 kb on + strand at 932.668 kb on + strand at 932.669 kb on - strand at 932.669 kb on - strand at 932.670 kb on + strand at 932.670 kb on + strand at 932.670 kb on + strand at 932.670 kb on + strand at 932.670 kb on + strand at 932.671 kb on - strand at 932.671 kb on - strand at 932.671 kb on - strand at 932.671 kb on - strand at 932.728 kb on + strand at 932.729 kb on - strand at 932.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_3 remove 929,249 - AMB_RS04425 0.40 +0.4 929,249 - AMB_RS04425 0.40 -0.5 929,438 - AMB_RS04425 0.80 -0.0 929,438 - AMB_RS04425 0.80 +0.7 929,531 - -0.3 929,538 + -0.4 929,538 + +0.1 929,548 - -0.1 929,584 + -0.2 929,584 + -0.2 929,584 + -0.3 929,585 - +0.2 929,725 + AMB_RS04430 0.37 -0.4 929,725 + AMB_RS04430 0.37 -0.1 929,725 + AMB_RS04430 0.37 -0.3 929,725 + AMB_RS04430 0.37 +0.4 929,725 + AMB_RS04430 0.37 -1.6 929,725 + AMB_RS04430 0.37 -0.3 929,725 + AMB_RS04430 0.37 -0.3 929,725 + AMB_RS04430 0.37 +0.1 929,725 + AMB_RS04430 0.37 -1.1 929,725 + AMB_RS04430 0.37 +0.3 929,725 + AMB_RS04430 0.37 -0.4 929,726 - AMB_RS04430 0.38 -1.9 929,726 - AMB_RS04430 0.38 -0.0 929,726 - AMB_RS04430 0.38 -0.3 929,726 - AMB_RS04430 0.38 -0.2 929,726 - AMB_RS04430 0.38 -0.4 929,726 - AMB_RS04430 0.38 -0.9 929,726 - AMB_RS04430 0.38 -1.0 929,726 - AMB_RS04430 0.38 +0.1 929,726 - AMB_RS04430 0.38 -2.6 929,726 - AMB_RS04430 0.38 +0.4 929,726 - AMB_RS04430 0.38 +1.0 929,726 - AMB_RS04430 0.38 -0.8 929,881 + AMB_RS04430 0.73 -1.1 929,881 + AMB_RS04430 0.73 -1.0 929,881 + AMB_RS04430 0.73 +0.4 929,882 - AMB_RS04430 0.73 +0.4 929,894 - AMB_RS04430 0.75 -0.1 929,956 + AMB_RS04430 0.89 -0.8 929,956 + AMB_RS04430 0.89 -0.2 929,956 + AMB_RS04430 0.89 +0.4 929,956 + AMB_RS04430 0.89 +0.2 929,956 + AMB_RS04430 0.89 -0.4 929,956 + AMB_RS04430 0.89 -1.6 929,957 - AMB_RS04430 0.90 +0.4 929,957 - AMB_RS04430 0.90 -0.2 929,957 - AMB_RS04430 0.90 -0.6 929,957 - AMB_RS04430 0.90 -0.7 929,957 - AMB_RS04430 0.90 +0.1 929,957 - AMB_RS04430 0.90 -0.1 929,957 - AMB_RS04430 0.90 -0.3 929,957 - AMB_RS04430 0.90 -0.0 929,957 - AMB_RS04430 0.90 +0.8 929,957 - AMB_RS04430 0.90 -0.0 929,957 - AMB_RS04430 0.90 +0.3 929,957 - AMB_RS04430 0.90 -0.8 929,957 - AMB_RS04430 0.90 -0.3 930,006 + -2.5 930,007 - -0.3 930,007 - -0.2 930,117 + +1.8 930,137 + -0.3 930,138 - +1.9 930,138 - +3.4 930,320 + -0.1 930,321 - -0.4 930,507 + AMB_RS04435 0.18 -0.8 930,508 - AMB_RS04435 0.18 -1.7 930,508 - AMB_RS04435 0.18 -1.8 930,568 - AMB_RS04435 0.22 -0.1 930,643 + AMB_RS04435 0.27 -1.1 930,644 - AMB_RS04435 0.27 -1.3 930,644 - AMB_RS04435 0.27 +1.4 930,777 + AMB_RS04435 0.36 +0.4 930,778 - AMB_RS04435 0.36 -1.3 930,778 - AMB_RS04435 0.36 -0.6 930,822 + AMB_RS04435 0.39 +0.9 930,822 + AMB_RS04435 0.39 -3.1 930,822 + AMB_RS04435 0.39 +0.1 930,823 - AMB_RS04435 0.39 -0.6 930,823 - AMB_RS04435 0.39 +0.6 930,823 - AMB_RS04435 0.39 +0.6 930,823 - AMB_RS04435 0.39 -0.0 930,823 - AMB_RS04435 0.39 +0.4 930,823 - AMB_RS04435 0.39 -0.4 930,823 - AMB_RS04435 0.39 -1.6 930,823 - AMB_RS04435 0.39 -1.6 930,823 - AMB_RS04435 0.39 -0.4 930,823 - AMB_RS04435 0.39 -0.2 930,823 - AMB_RS04435 0.39 +0.1 930,824 + AMB_RS04435 0.39 -0.6 930,825 - AMB_RS04435 0.39 +0.0 930,825 - AMB_RS04435 0.39 +1.1 931,113 + AMB_RS04435 0.58 +0.9 931,113 + AMB_RS04435 0.58 -0.4 931,113 + AMB_RS04435 0.58 -0.3 931,121 + AMB_RS04435 0.59 -0.1 931,121 + AMB_RS04435 0.59 -0.6 931,278 + AMB_RS04435 0.69 -0.5 931,278 + AMB_RS04435 0.69 +0.4 931,278 + AMB_RS04435 0.69 +0.4 931,279 - AMB_RS04435 0.69 +2.7 931,279 - AMB_RS04435 0.69 -0.6 931,279 - AMB_RS04435 0.69 -0.6 931,303 + AMB_RS04435 0.71 -0.1 931,303 + AMB_RS04435 0.71 -0.3 931,303 + AMB_RS04435 0.71 +3.9 931,303 + AMB_RS04435 0.71 -2.4 931,304 - AMB_RS04435 0.71 -0.2 931,304 - AMB_RS04435 0.71 +0.4 931,392 + AMB_RS04435 0.77 +0.1 931,392 + AMB_RS04435 0.77 +0.4 931,392 + AMB_RS04435 0.77 -1.6 931,393 - AMB_RS04435 0.77 -0.1 931,393 - AMB_RS04435 0.77 +0.1 931,393 - AMB_RS04435 0.77 -3.3 931,393 - AMB_RS04435 0.77 -0.3 931,455 + AMB_RS04435 0.81 -1.3 931,455 + AMB_RS04435 0.81 -0.8 931,456 - AMB_RS04435 0.81 -0.5 931,456 - AMB_RS04435 0.81 -0.9 931,479 + AMB_RS04435 0.82 -2.1 931,479 + AMB_RS04435 0.82 -0.7 931,479 + AMB_RS04435 0.82 +1.8 931,480 - AMB_RS04435 0.82 -0.7 931,480 - AMB_RS04435 0.82 -0.0 931,480 - AMB_RS04435 0.82 +0.4 931,611 + -0.2 931,611 + +0.3 931,612 - -3.2 931,623 + -1.9 931,823 + -1.0 931,823 + -0.3 931,824 - -2.0 931,824 - +0.1 931,864 + -0.6 931,889 + -0.4 931,889 + -2.4 931,890 - +0.6 931,890 - -0.2 931,890 - +0.9 931,890 - -1.0 931,890 - -0.4 931,920 + -2.1 931,986 + AMB_RS04440 0.33 +1.9 932,112 + -1.1 932,158 + +1.9 932,159 - +0.4 932,668 + -0.6 932,668 + -0.3 932,669 - -0.1 932,669 - -0.2 932,670 + -0.5 932,670 + +0.4 932,670 + +0.1 932,670 + -1.2 932,670 + -1.1 932,671 - -1.7 932,671 - -0.6 932,671 - -0.1 932,671 - -2.0 932,728 + +0.3 932,729 - +0.9 932,729 - +1.6
Or see this region's nucleotide sequence