Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03985

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03975 and AMB_RS03980 are separated by 90 nucleotidesAMB_RS03980 and AMB_RS03985 are separated by 65 nucleotidesAMB_RS03985 and AMB_RS03990 are separated by 1 nucleotidesAMB_RS03990 and AMB_RS03995 overlap by 4 nucleotides AMB_RS03975: AMB_RS03975 - hypothetical protein, at 833,410 to 834,744 _RS03975 AMB_RS03980: AMB_RS03980 - serine/threonine protein phosphatase, at 834,835 to 835,623 _RS03980 AMB_RS03985: AMB_RS03985 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase, at 835,689 to 837,155 _RS03985 AMB_RS03990: AMB_RS03990 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 837,157 to 837,618 _RS03990 AMB_RS03995: AMB_RS03995 - tRNA epoxyqueuosine(34) reductase QueG, at 837,615 to 838,697 _RS03995 Position (kb) 835 836 837 838Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 834.813 kb on - strandat 834.813 kb on - strandat 834.813 kb on - strandat 834.813 kb on - strandat 834.813 kb on - strandat 834.813 kb on - strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.817 kb on - strandat 834.817 kb on - strandat 834.817 kb on - strandat 834.846 kb on + strandat 834.882 kb on - strandat 834.882 kb on - strandat 834.931 kb on + strand, within AMB_RS03980at 834.931 kb on + strand, within AMB_RS03980at 834.931 kb on + strand, within AMB_RS03980at 834.932 kb on - strand, within AMB_RS03980at 834.932 kb on - strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.276 kb on + strand, within AMB_RS03980at 835.276 kb on + strand, within AMB_RS03980at 835.369 kb on + strand, within AMB_RS03980at 835.369 kb on + strand, within AMB_RS03980at 835.370 kb on - strand, within AMB_RS03980at 835.370 kb on - strand, within AMB_RS03980at 835.370 kb on - strand, within AMB_RS03980at 835.617 kb on + strandat 837.268 kb on + strand, within AMB_RS03990at 837.268 kb on + strand, within AMB_RS03990at 837.269 kb on - strand, within AMB_RS03990at 837.269 kb on - strand, within AMB_RS03990at 837.269 kb on - strand, within AMB_RS03990at 837.352 kb on + strand, within AMB_RS03990at 837.760 kb on - strand, within AMB_RS03995at 837.876 kb on + strand, within AMB_RS03995at 837.876 kb on + strand, within AMB_RS03995at 837.876 kb on + strand, within AMB_RS03995at 837.877 kb on - strand, within AMB_RS03995at 837.877 kb on - strand, within AMB_RS03995at 837.877 kb on - strand, within AMB_RS03995at 837.877 kb on - strand, within AMB_RS03995at 837.929 kb on + strand, within AMB_RS03995at 837.939 kb on + strand, within AMB_RS03995at 837.940 kb on - strand, within AMB_RS03995at 837.940 kb on - strand, within AMB_RS03995at 837.940 kb on - strand, within AMB_RS03995at 837.957 kb on + strand, within AMB_RS03995at 838.112 kb on + strand, within AMB_RS03995

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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834,813 - -1.7
834,813 - +0.0
834,813 - +0.1
834,813 - -0.3
834,813 - -0.0
834,813 - +1.0
834,814 + -0.4
834,814 + -0.3
834,814 + -0.8
834,814 + -1.1
834,814 + -0.8
834,814 + +0.9
834,814 + +0.2
834,814 + +2.0
834,814 + -1.3
834,814 + -1.5
834,814 + -0.7
834,814 + -0.1
834,814 + -0.1
834,815 - -0.4
834,815 - -3.0
834,815 - -0.5
834,815 - -1.4
834,815 - -3.2
834,815 - -0.3
834,815 - +0.0
834,815 - -0.3
834,815 - +0.5
834,815 - +0.1
834,815 - -0.9
834,815 - +0.8
834,816 + +0.6
834,816 + +0.0
834,816 + +0.7
834,816 + +0.3
834,816 + -0.5
834,816 + +0.2
834,817 - -0.0
834,817 - -0.1
834,817 - +0.5
834,846 + +1.0
834,882 - -1.4
834,882 - -3.3
834,931 + AMB_RS03980 0.12 +1.1
834,931 + AMB_RS03980 0.12 +0.1
834,931 + AMB_RS03980 0.12 -0.3
834,932 - AMB_RS03980 0.12 +0.7
834,932 - AMB_RS03980 0.12 -0.4
835,240 + AMB_RS03980 0.51 +0.3
835,240 + AMB_RS03980 0.51 -1.6
835,240 + AMB_RS03980 0.51 +0.6
835,240 + AMB_RS03980 0.51 -0.5
835,240 + AMB_RS03980 0.51 -0.5
835,240 + AMB_RS03980 0.51 +1.4
835,240 + AMB_RS03980 0.51 +0.5
835,240 + AMB_RS03980 0.51 -0.1
835,241 - AMB_RS03980 0.51 +2.3
835,241 - AMB_RS03980 0.51 +3.2
835,241 - AMB_RS03980 0.51 -0.1
835,241 - AMB_RS03980 0.51 -0.9
835,241 - AMB_RS03980 0.51 +0.0
835,241 - AMB_RS03980 0.51 +0.0
835,241 - AMB_RS03980 0.51 +0.4
835,276 + AMB_RS03980 0.56 -0.9
835,276 + AMB_RS03980 0.56 +0.6
835,369 + AMB_RS03980 0.68 +0.8
835,369 + AMB_RS03980 0.68 +0.9
835,370 - AMB_RS03980 0.68 -0.9
835,370 - AMB_RS03980 0.68 -0.8
835,370 - AMB_RS03980 0.68 -0.5
835,617 + -0.5
837,268 + AMB_RS03990 0.24 -0.5
837,268 + AMB_RS03990 0.24 +3.5
837,269 - AMB_RS03990 0.24 -1.0
837,269 - AMB_RS03990 0.24 -0.6
837,269 - AMB_RS03990 0.24 +0.6
837,352 + AMB_RS03990 0.42 -2.5
837,760 - AMB_RS03995 0.13 -0.7
837,876 + AMB_RS03995 0.24 -0.8
837,876 + AMB_RS03995 0.24 -0.9
837,876 + AMB_RS03995 0.24 +0.1
837,877 - AMB_RS03995 0.24 +0.3
837,877 - AMB_RS03995 0.24 +0.5
837,877 - AMB_RS03995 0.24 -1.8
837,877 - AMB_RS03995 0.24 +0.2
837,929 + AMB_RS03995 0.29 -0.2
837,939 + AMB_RS03995 0.30 -0.2
837,940 - AMB_RS03995 0.30 -0.2
837,940 - AMB_RS03995 0.30 -0.1
837,940 - AMB_RS03995 0.30 -0.6
837,957 + AMB_RS03995 0.32 -0.5
838,112 + AMB_RS03995 0.46 +0.1

Or see this region's nucleotide sequence