Experiment: 150_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03765 and AMB_RS03770 are separated by 137 nucleotides AMB_RS03770 and AMB_RS03775 are separated by 85 nucleotides AMB_RS03775 and AMB_RS03780 are separated by 42 nucleotides AMB_RS03780 and AMB_RS03785 are separated by 103 nucleotides AMB_RS03785 and AMB_RS03790 are separated by 0 nucleotides
AMB_RS03765: AMB_RS03765 - hypothetical protein, at 797,122 to 798,321
_RS03765
AMB_RS03770: AMB_RS03770 - hypothetical protein, at 798,459 to 798,695
_RS03770
AMB_RS03775: AMB_RS03775 - hypothetical protein, at 798,781 to 799,044
_RS03775
AMB_RS03780: AMB_RS03780 - hypothetical protein, at 799,087 to 799,332
_RS03780
AMB_RS03785: AMB_RS03785 - hemerythrin, at 799,436 to 799,840
_RS03785
AMB_RS03790: AMB_RS03790 - aminopeptidase P family protein, at 799,841 to 801,652
_RS03790
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 797.803 kb on + strand, within AMB_RS03765 at 797.804 kb on - strand, within AMB_RS03765 at 797.804 kb on - strand, within AMB_RS03765 at 797.876 kb on - strand, within AMB_RS03765 at 797.913 kb on + strand, within AMB_RS03765 at 797.913 kb on + strand, within AMB_RS03765 at 797.914 kb on - strand, within AMB_RS03765 at 797.935 kb on + strand, within AMB_RS03765 at 797.935 kb on + strand, within AMB_RS03765 at 797.936 kb on - strand, within AMB_RS03765 at 797.936 kb on - strand, within AMB_RS03765 at 797.997 kb on + strand, within AMB_RS03765 at 798.341 kb on + strand at 798.341 kb on + strand at 798.341 kb on + strand at 798.342 kb on - strand at 798.342 kb on - strand at 798.342 kb on - strand at 798.347 kb on - strand at 798.368 kb on + strand at 798.368 kb on + strand at 798.368 kb on + strand at 798.369 kb on - strand at 798.371 kb on + strand at 798.371 kb on + strand at 798.371 kb on + strand at 798.371 kb on + strand at 798.407 kb on + strand at 798.408 kb on - strand at 798.427 kb on + strand at 798.465 kb on + strand at 798.466 kb on - strand at 798.474 kb on - strand at 798.474 kb on - strand at 798.474 kb on - strand at 798.693 kb on + strand at 798.694 kb on - strand at 798.887 kb on + strand, within AMB_RS03775 at 798.887 kb on + strand, within AMB_RS03775 at 798.887 kb on + strand, within AMB_RS03775 at 798.887 kb on + strand, within AMB_RS03775 at 798.888 kb on - strand, within AMB_RS03775 at 799.053 kb on - strand at 799.063 kb on + strand at 799.063 kb on + strand at 799.063 kb on + strand at 799.064 kb on - strand at 799.064 kb on - strand at 799.069 kb on + strand at 799.070 kb on - strand at 799.070 kb on - strand at 799.113 kb on + strand, within AMB_RS03780 at 799.113 kb on + strand, within AMB_RS03780 at 799.114 kb on - strand, within AMB_RS03780 at 799.241 kb on + strand, within AMB_RS03780 at 799.354 kb on - strand at 799.396 kb on + strand at 799.742 kb on + strand, within AMB_RS03785 at 799.743 kb on - strand, within AMB_RS03785 at 799.743 kb on - strand, within AMB_RS03785 at 799.793 kb on + strand, within AMB_RS03785 at 799.796 kb on + strand, within AMB_RS03785 at 799.796 kb on + strand, within AMB_RS03785 at 799.796 kb on + strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.797 kb on - strand, within AMB_RS03785 at 799.839 kb on - strand at 799.839 kb on - strand at 799.842 kb on + strand at 799.843 kb on - strand at 799.843 kb on - strand at 799.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_3 remove 797,803 + AMB_RS03765 0.57 -1.9 797,804 - AMB_RS03765 0.57 +0.0 797,804 - AMB_RS03765 0.57 +0.2 797,876 - AMB_RS03765 0.63 -0.7 797,913 + AMB_RS03765 0.66 +0.9 797,913 + AMB_RS03765 0.66 -0.5 797,914 - AMB_RS03765 0.66 +1.0 797,935 + AMB_RS03765 0.68 -0.6 797,935 + AMB_RS03765 0.68 -0.5 797,936 - AMB_RS03765 0.68 +0.7 797,936 - AMB_RS03765 0.68 -0.4 797,997 + AMB_RS03765 0.73 -0.4 798,341 + +0.9 798,341 + -0.3 798,341 + +0.2 798,342 - -1.4 798,342 - +0.1 798,342 - -0.5 798,347 - -0.4 798,368 + +0.5 798,368 + +1.2 798,368 + +0.7 798,369 - -0.1 798,371 + -0.5 798,371 + +0.8 798,371 + +0.1 798,371 + +0.2 798,407 + -0.9 798,408 - -0.9 798,427 + -1.2 798,465 + -2.0 798,466 - -0.3 798,474 - -1.2 798,474 - -0.6 798,474 - -0.4 798,693 + -2.3 798,694 - +0.8 798,887 + AMB_RS03775 0.40 -2.1 798,887 + AMB_RS03775 0.40 +1.3 798,887 + AMB_RS03775 0.40 -1.0 798,887 + AMB_RS03775 0.40 -2.7 798,888 - AMB_RS03775 0.41 -0.3 799,053 - -0.2 799,063 + +0.3 799,063 + +1.6 799,063 + -0.9 799,064 - +0.6 799,064 - +0.0 799,069 + -0.5 799,070 - -2.9 799,070 - +0.2 799,113 + AMB_RS03780 0.11 -0.1 799,113 + AMB_RS03780 0.11 -1.0 799,114 - AMB_RS03780 0.11 +0.2 799,241 + AMB_RS03780 0.63 -0.4 799,354 - -2.0 799,396 + +0.1 799,742 + AMB_RS03785 0.76 -0.7 799,743 - AMB_RS03785 0.76 -0.3 799,743 - AMB_RS03785 0.76 -1.0 799,793 + AMB_RS03785 0.88 -1.7 799,796 + AMB_RS03785 0.89 +0.7 799,796 + AMB_RS03785 0.89 -2.5 799,796 + AMB_RS03785 0.89 -0.3 799,797 - AMB_RS03785 0.89 +0.4 799,797 - AMB_RS03785 0.89 +0.5 799,797 - AMB_RS03785 0.89 -0.5 799,797 - AMB_RS03785 0.89 -0.5 799,797 - AMB_RS03785 0.89 -0.9 799,839 - -0.7 799,839 - +0.5 799,842 + -0.2 799,843 - -0.5 799,843 - +1.7 799,930 - -0.6
Or see this region's nucleotide sequence