Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02665

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02655 and AMB_RS02660 are separated by 16 nucleotidesAMB_RS02660 and AMB_RS02665 overlap by 8 nucleotidesAMB_RS02665 and AMB_RS02670 are separated by 142 nucleotides AMB_RS02655: AMB_RS02655 - sulfite exporter TauE/SafE family protein, at 552,867 to 553,625 _RS02655 AMB_RS02660: AMB_RS02660 - SCO family protein, at 553,642 to 554,244 _RS02660 AMB_RS02665: AMB_RS02665 - cobyrinate a,c-diamide synthase, at 554,237 to 555,607 _RS02665 AMB_RS02670: AMB_RS02670 - polyhydroxyalkanoate depolymerase, at 555,750 to 556,976 _RS02670 Position (kb) 554 555 556Strain fitness (log2 ratio) -3 -2 -1 0 1at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.567 kb on + strandat 553.567 kb on + strandat 553.568 kb on - strandat 553.834 kb on + strand, within AMB_RS02660at 553.834 kb on + strand, within AMB_RS02660at 553.834 kb on + strand, within AMB_RS02660at 553.834 kb on + strand, within AMB_RS02660at 553.884 kb on + strand, within AMB_RS02660at 554.002 kb on + strand, within AMB_RS02660at 554.002 kb on + strand, within AMB_RS02660at 554.002 kb on + strand, within AMB_RS02660at 554.002 kb on + strand, within AMB_RS02660at 554.122 kb on + strand, within AMB_RS02660at 554.149 kb on + strand, within AMB_RS02660at 554.149 kb on + strand, within AMB_RS02660at 554.149 kb on + strand, within AMB_RS02660at 555.749 kb on + strandat 555.750 kb on - strandat 555.750 kb on - strandat 555.756 kb on + strandat 555.756 kb on + strandat 555.828 kb on + strandat 555.829 kb on - strandat 555.829 kb on - strandat 555.855 kb on + strandat 555.855 kb on + strandat 555.855 kb on + strandat 555.855 kb on + strandat 555.856 kb on - strandat 555.856 kb on - strandat 555.856 kb on - strandat 555.857 kb on + strandat 555.947 kb on + strand, within AMB_RS02670at 555.947 kb on + strand, within AMB_RS02670at 555.948 kb on - strand, within AMB_RS02670at 555.948 kb on - strand, within AMB_RS02670at 556.143 kb on + strand, within AMB_RS02670at 556.143 kb on + strand, within AMB_RS02670at 556.143 kb on + strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.491 kb on + strand, within AMB_RS02670at 556.492 kb on - strand, within AMB_RS02670

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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553,401 + AMB_RS02655 0.70 +0.1
553,401 + AMB_RS02655 0.70 +0.6
553,401 + AMB_RS02655 0.70 -0.2
553,401 + AMB_RS02655 0.70 -0.2
553,401 + AMB_RS02655 0.70 -0.6
553,402 - AMB_RS02655 0.70 -1.5
553,402 - AMB_RS02655 0.70 -0.7
553,402 - AMB_RS02655 0.70 -1.9
553,402 - AMB_RS02655 0.70 -0.4
553,402 - AMB_RS02655 0.70 -2.2
553,402 - AMB_RS02655 0.70 -1.6
553,402 - AMB_RS02655 0.70 -0.4
553,567 + +0.4
553,567 + +0.1
553,568 - -0.8
553,834 + AMB_RS02660 0.32 -2.0
553,834 + AMB_RS02660 0.32 -2.3
553,834 + AMB_RS02660 0.32 -1.1
553,834 + AMB_RS02660 0.32 -2.8
553,884 + AMB_RS02660 0.40 -2.3
554,002 + AMB_RS02660 0.60 -2.1
554,002 + AMB_RS02660 0.60 -0.7
554,002 + AMB_RS02660 0.60 +1.4
554,002 + AMB_RS02660 0.60 -2.2
554,122 + AMB_RS02660 0.80 -2.1
554,149 + AMB_RS02660 0.84 -2.7
554,149 + AMB_RS02660 0.84 +0.5
554,149 + AMB_RS02660 0.84 -2.2
555,749 + +1.5
555,750 - +0.5
555,750 - -2.3
555,756 + -1.7
555,756 + -0.5
555,828 + -1.3
555,829 - +0.7
555,829 - -0.7
555,855 + +0.5
555,855 + +0.5
555,855 + -1.5
555,855 + -1.1
555,856 - +0.0
555,856 - +0.6
555,856 - -1.4
555,857 + +0.6
555,947 + AMB_RS02670 0.16 -0.8
555,947 + AMB_RS02670 0.16 -0.9
555,948 - AMB_RS02670 0.16 +0.8
555,948 - AMB_RS02670 0.16 -0.2
556,143 + AMB_RS02670 0.32 -1.9
556,143 + AMB_RS02670 0.32 +0.3
556,143 + AMB_RS02670 0.32 +0.2
556,144 - AMB_RS02670 0.32 -0.1
556,144 - AMB_RS02670 0.32 +0.6
556,144 - AMB_RS02670 0.32 +0.6
556,144 - AMB_RS02670 0.32 -1.5
556,144 - AMB_RS02670 0.32 +0.3
556,209 + AMB_RS02670 0.37 -0.7
556,209 + AMB_RS02670 0.37 +0.3
556,209 + AMB_RS02670 0.37 +0.7
556,209 + AMB_RS02670 0.37 +0.0
556,209 + AMB_RS02670 0.37 +0.2
556,209 + AMB_RS02670 0.37 +0.6
556,467 + AMB_RS02670 0.58 -1.3
556,467 + AMB_RS02670 0.58 -0.8
556,467 + AMB_RS02670 0.58 -0.3
556,467 + AMB_RS02670 0.58 +0.5
556,468 - AMB_RS02670 0.59 +0.5
556,468 - AMB_RS02670 0.59 -1.7
556,468 - AMB_RS02670 0.59 +0.1
556,468 - AMB_RS02670 0.59 -0.2
556,468 - AMB_RS02670 0.59 -2.7
556,491 + AMB_RS02670 0.60 -3.0
556,492 - AMB_RS02670 0.60 +1.5

Or see this region's nucleotide sequence