Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02610

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02605 and AMB_RS02610 are separated by 194 nucleotidesAMB_RS02610 and AMB_RS02615 are separated by 4 nucleotidesAMB_RS02615 and AMB_RS02620 are separated by 28 nucleotides AMB_RS02605: AMB_RS02605 - flagellar hook-length control protein FliK, at 542,448 to 544,211 _RS02605 AMB_RS02610: AMB_RS02610 - hypothetical protein, at 544,406 to 544,666 _RS02610 AMB_RS02615: AMB_RS02615 - competence/damage-inducible protein A, at 544,671 to 545,405 _RS02615 AMB_RS02620: AMB_RS02620 - GNAT family N-acetyltransferase, at 545,434 to 546,417 _RS02620 Position (kb) 544 545Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 544.410 kb on + strandat 544.410 kb on + strandat 544.410 kb on + strandat 544.410 kb on + strandat 544.410 kb on + strandat 544.410 kb on + strandat 544.410 kb on + strandat 544.411 kb on - strandat 544.411 kb on - strandat 544.411 kb on - strandat 544.411 kb on - strandat 544.411 kb on - strandat 544.614 kb on + strand, within AMB_RS02610at 544.614 kb on + strand, within AMB_RS02610at 544.614 kb on + strand, within AMB_RS02610at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.218 kb on + strand, within AMB_RS02615at 545.219 kb on - strand, within AMB_RS02615at 545.219 kb on - strand, within AMB_RS02615at 545.219 kb on - strand, within AMB_RS02615at 545.219 kb on - strand, within AMB_RS02615at 545.219 kb on - strand, within AMB_RS02615at 545.219 kb on - strand, within AMB_RS02615at 545.224 kb on + strand, within AMB_RS02615at 545.224 kb on + strand, within AMB_RS02615at 545.225 kb on - strand, within AMB_RS02615at 545.245 kb on - strand, within AMB_RS02615at 545.332 kb on + strandat 545.432 kb on + strandat 545.435 kb on + strandat 545.435 kb on + strandat 545.435 kb on + strandat 545.436 kb on - strandat 545.436 kb on - strandat 545.437 kb on + strandat 545.437 kb on + strandat 545.437 kb on + strandat 545.561 kb on - strand, within AMB_RS02620at 545.573 kb on + strand, within AMB_RS02620at 545.573 kb on + strand, within AMB_RS02620at 545.573 kb on + strand, within AMB_RS02620at 545.573 kb on + strand, within AMB_RS02620at 545.574 kb on - strand, within AMB_RS02620at 545.574 kb on - strand, within AMB_RS02620at 545.574 kb on - strand, within AMB_RS02620at 545.574 kb on - strand, within AMB_RS02620at 545.603 kb on + strand, within AMB_RS02620at 545.603 kb on + strand, within AMB_RS02620at 545.603 kb on + strand, within AMB_RS02620at 545.603 kb on + strand, within AMB_RS02620at 545.604 kb on - strand, within AMB_RS02620at 545.604 kb on - strand, within AMB_RS02620at 545.632 kb on + strand, within AMB_RS02620

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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544,410 + +1.3
544,410 + -0.2
544,410 + +0.7
544,410 + +1.4
544,410 + -2.1
544,410 + -1.3
544,410 + +0.5
544,411 - -0.5
544,411 - -0.4
544,411 - +1.3
544,411 - -0.4
544,411 - -2.7
544,614 + AMB_RS02610 0.80 -0.3
544,614 + AMB_RS02610 0.80 +0.2
544,614 + AMB_RS02610 0.80 -0.0
545,218 + AMB_RS02615 0.74 +2.2
545,218 + AMB_RS02615 0.74 +0.3
545,218 + AMB_RS02615 0.74 -3.4
545,218 + AMB_RS02615 0.74 -2.4
545,218 + AMB_RS02615 0.74 -0.0
545,218 + AMB_RS02615 0.74 -0.5
545,218 + AMB_RS02615 0.74 +0.1
545,218 + AMB_RS02615 0.74 +0.4
545,218 + AMB_RS02615 0.74 -0.5
545,218 + AMB_RS02615 0.74 -0.3
545,218 + AMB_RS02615 0.74 +2.1
545,219 - AMB_RS02615 0.75 +0.4
545,219 - AMB_RS02615 0.75 -2.0
545,219 - AMB_RS02615 0.75 -0.7
545,219 - AMB_RS02615 0.75 -0.1
545,219 - AMB_RS02615 0.75 +0.2
545,219 - AMB_RS02615 0.75 -0.5
545,224 + AMB_RS02615 0.75 -0.1
545,224 + AMB_RS02615 0.75 +1.5
545,225 - AMB_RS02615 0.75 +2.1
545,245 - AMB_RS02615 0.78 +0.3
545,332 + +0.2
545,432 + +1.6
545,435 + -1.1
545,435 + -1.7
545,435 + +0.5
545,436 - +0.8
545,436 - -0.4
545,437 + +0.1
545,437 + -2.0
545,437 + +0.0
545,561 - AMB_RS02620 0.13 +0.1
545,573 + AMB_RS02620 0.14 -0.1
545,573 + AMB_RS02620 0.14 +0.8
545,573 + AMB_RS02620 0.14 +0.0
545,573 + AMB_RS02620 0.14 -1.1
545,574 - AMB_RS02620 0.14 -0.5
545,574 - AMB_RS02620 0.14 -0.0
545,574 - AMB_RS02620 0.14 +1.3
545,574 - AMB_RS02620 0.14 -1.4
545,603 + AMB_RS02620 0.17 -1.7
545,603 + AMB_RS02620 0.17 +0.7
545,603 + AMB_RS02620 0.17 -0.8
545,603 + AMB_RS02620 0.17 +1.7
545,604 - AMB_RS02620 0.17 -0.4
545,604 - AMB_RS02620 0.17 +1.5
545,632 + AMB_RS02620 0.20 +0.7

Or see this region's nucleotide sequence