Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02515

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02510 and AMB_RS02515 are separated by 222 nucleotidesAMB_RS02515 and AMB_RS02520 are separated by 48 nucleotides AMB_RS02510: AMB_RS02510 - DUF4102 domain-containing protein, at 519,546 to 520,784 _RS02510 AMB_RS02515: AMB_RS02515 - tRNA-Ala, at 521,007 to 521,082 _RS02515 AMB_RS02520: AMB_RS02520 - hypothetical protein, at 521,131 to 522,141 _RS02520 Position (kb) 521 522Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 520.046 kb on + strand, within AMB_RS02510at 520.046 kb on + strand, within AMB_RS02510at 520.046 kb on + strand, within AMB_RS02510at 520.047 kb on - strand, within AMB_RS02510at 520.047 kb on - strand, within AMB_RS02510at 520.047 kb on - strand, within AMB_RS02510at 520.047 kb on - strand, within AMB_RS02510at 520.087 kb on - strand, within AMB_RS02510at 520.087 kb on - strand, within AMB_RS02510at 520.087 kb on - strand, within AMB_RS02510at 520.087 kb on - strand, within AMB_RS02510at 520.255 kb on + strand, within AMB_RS02510at 520.262 kb on + strand, within AMB_RS02510at 520.263 kb on - strand, within AMB_RS02510at 520.263 kb on - strand, within AMB_RS02510at 520.263 kb on - strand, within AMB_RS02510at 520.263 kb on - strand, within AMB_RS02510at 520.289 kb on + strand, within AMB_RS02510at 520.355 kb on + strand, within AMB_RS02510at 520.356 kb on - strand, within AMB_RS02510at 520.356 kb on - strand, within AMB_RS02510at 520.457 kb on + strand, within AMB_RS02510at 520.458 kb on - strand, within AMB_RS02510at 520.458 kb on - strand, within AMB_RS02510at 520.560 kb on + strand, within AMB_RS02510at 520.561 kb on - strand, within AMB_RS02510at 520.661 kb on - strandat 520.675 kb on + strandat 520.676 kb on - strandat 520.732 kb on - strandat 520.732 kb on - strandat 520.732 kb on - strandat 520.760 kb on + strandat 520.793 kb on - strandat 520.814 kb on - strandat 520.814 kb on - strandat 520.827 kb on + strandat 520.827 kb on + strandat 520.827 kb on + strandat 520.827 kb on + strandat 520.828 kb on - strandat 520.828 kb on - strandat 520.828 kb on - strandat 520.899 kb on + strandat 520.900 kb on - strandat 520.900 kb on - strandat 520.949 kb on - strandat 521.214 kb on - strandat 521.282 kb on - strand, within AMB_RS02520at 521.357 kb on + strand, within AMB_RS02520at 521.357 kb on + strand, within AMB_RS02520at 521.358 kb on - strand, within AMB_RS02520at 521.358 kb on - strand, within AMB_RS02520at 521.429 kb on + strand, within AMB_RS02520at 521.429 kb on + strand, within AMB_RS02520at 521.429 kb on + strand, within AMB_RS02520at 521.430 kb on - strand, within AMB_RS02520at 521.510 kb on + strand, within AMB_RS02520at 521.510 kb on + strand, within AMB_RS02520at 521.510 kb on + strand, within AMB_RS02520at 521.511 kb on - strand, within AMB_RS02520at 521.511 kb on - strand, within AMB_RS02520at 521.511 kb on - strand, within AMB_RS02520at 521.583 kb on + strand, within AMB_RS02520at 521.585 kb on + strand, within AMB_RS02520at 521.586 kb on - strand, within AMB_RS02520at 521.615 kb on + strand, within AMB_RS02520at 521.615 kb on + strand, within AMB_RS02520at 521.798 kb on + strand, within AMB_RS02520at 521.798 kb on + strand, within AMB_RS02520at 521.799 kb on - strand, within AMB_RS02520at 521.799 kb on - strand, within AMB_RS02520at 522.050 kb on + strandat 522.050 kb on + strandat 522.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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520,046 + AMB_RS02510 0.40 -0.3
520,046 + AMB_RS02510 0.40 -0.2
520,046 + AMB_RS02510 0.40 -0.2
520,047 - AMB_RS02510 0.40 -0.3
520,047 - AMB_RS02510 0.40 -0.4
520,047 - AMB_RS02510 0.40 +2.1
520,047 - AMB_RS02510 0.40 -0.1
520,087 - AMB_RS02510 0.44 -0.3
520,087 - AMB_RS02510 0.44 -1.7
520,087 - AMB_RS02510 0.44 -0.3
520,087 - AMB_RS02510 0.44 -2.7
520,255 + AMB_RS02510 0.57 -0.4
520,262 + AMB_RS02510 0.58 +0.4
520,263 - AMB_RS02510 0.58 -0.3
520,263 - AMB_RS02510 0.58 -1.1
520,263 - AMB_RS02510 0.58 -1.4
520,263 - AMB_RS02510 0.58 -3.3
520,289 + AMB_RS02510 0.60 -0.3
520,355 + AMB_RS02510 0.65 +0.3
520,356 - AMB_RS02510 0.65 +0.5
520,356 - AMB_RS02510 0.65 -3.7
520,457 + AMB_RS02510 0.74 +0.6
520,458 - AMB_RS02510 0.74 -0.3
520,458 - AMB_RS02510 0.74 +1.4
520,560 + AMB_RS02510 0.82 -0.5
520,561 - AMB_RS02510 0.82 -2.3
520,661 - +0.7
520,675 + -0.5
520,676 - +1.5
520,732 - +0.1
520,732 - +0.2
520,732 - +0.2
520,760 + -0.1
520,793 - -0.0
520,814 - -0.3
520,814 - -1.6
520,827 + +0.1
520,827 + -0.3
520,827 + -0.4
520,827 + +1.0
520,828 - -0.7
520,828 - -0.1
520,828 - -0.0
520,899 + +0.0
520,900 - -1.9
520,900 - +2.9
520,949 - +0.8
521,214 - -3.1
521,282 - AMB_RS02520 0.15 -2.1
521,357 + AMB_RS02520 0.22 +0.1
521,357 + AMB_RS02520 0.22 +0.0
521,358 - AMB_RS02520 0.22 -1.7
521,358 - AMB_RS02520 0.22 -0.7
521,429 + AMB_RS02520 0.29 -0.6
521,429 + AMB_RS02520 0.29 -0.5
521,429 + AMB_RS02520 0.29 +0.0
521,430 - AMB_RS02520 0.30 +0.1
521,510 + AMB_RS02520 0.37 -0.8
521,510 + AMB_RS02520 0.37 -0.3
521,510 + AMB_RS02520 0.37 +0.4
521,511 - AMB_RS02520 0.38 +0.1
521,511 - AMB_RS02520 0.38 -1.1
521,511 - AMB_RS02520 0.38 -0.6
521,583 + AMB_RS02520 0.45 -0.2
521,585 + AMB_RS02520 0.45 -1.8
521,586 - AMB_RS02520 0.45 -1.6
521,615 + AMB_RS02520 0.48 +0.3
521,615 + AMB_RS02520 0.48 +0.1
521,798 + AMB_RS02520 0.66 -0.3
521,798 + AMB_RS02520 0.66 +0.5
521,799 - AMB_RS02520 0.66 -1.2
521,799 - AMB_RS02520 0.66 -1.1
522,050 + +0.0
522,050 + -1.3
522,051 - -2.1

Or see this region's nucleotide sequence