Experiment: 150_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01140 and AMB_RS01145 are separated by 110 nucleotides AMB_RS01145 and AMB_RS01150 are separated by 48 nucleotides AMB_RS01150 and AMB_RS01155 are separated by 13 nucleotides AMB_RS01155 and AMB_RS01160 overlap by 14 nucleotides
AMB_RS01140: AMB_RS01140 - LysR family transcriptional regulator, at 255,168 to 256,097
_RS01140
AMB_RS01145: AMB_RS01145 - dioxygenase, at 256,208 to 256,975
_RS01145
AMB_RS01150: AMB_RS01150 - hemerythrin, at 257,024 to 257,431
_RS01150
AMB_RS01155: AMB_RS01155 - hypothetical protein, at 257,445 to 257,831
_RS01155
AMB_RS01160: AMB_RS01160 - glycosyltransferase, at 257,818 to 258,912
_RS01160
Position (kb) 257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 256.124 kb on + strand at 256.403 kb on + strand, within AMB_RS01145 at 256.404 kb on - strand, within AMB_RS01145 at 256.404 kb on - strand, within AMB_RS01145 at 256.404 kb on - strand, within AMB_RS01145 at 256.404 kb on - strand, within AMB_RS01145 at 256.404 kb on - strand, within AMB_RS01145 at 256.424 kb on + strand, within AMB_RS01145 at 256.436 kb on + strand, within AMB_RS01145 at 256.622 kb on + strand, within AMB_RS01145 at 256.622 kb on + strand, within AMB_RS01145 at 256.622 kb on + strand, within AMB_RS01145 at 256.622 kb on + strand, within AMB_RS01145 at 256.622 kb on + strand, within AMB_RS01145 at 256.623 kb on - strand, within AMB_RS01145 at 256.623 kb on - strand, within AMB_RS01145 at 256.623 kb on - strand, within AMB_RS01145 at 256.697 kb on - strand, within AMB_RS01145 at 256.710 kb on - strand, within AMB_RS01145 at 256.710 kb on - strand, within AMB_RS01145 at 256.710 kb on - strand, within AMB_RS01145 at 256.710 kb on - strand, within AMB_RS01145 at 256.815 kb on - strand, within AMB_RS01145 at 256.961 kb on + strand at 256.962 kb on - strand at 256.991 kb on + strand at 256.991 kb on + strand at 256.991 kb on + strand at 256.991 kb on + strand at 256.992 kb on - strand at 256.992 kb on - strand at 256.992 kb on - strand at 256.992 kb on - strand at 256.992 kb on - strand at 257.007 kb on + strand at 257.007 kb on + strand at 257.008 kb on - strand at 257.030 kb on + strand at 257.030 kb on + strand at 257.031 kb on - strand at 257.031 kb on - strand at 257.180 kb on + strand, within AMB_RS01150 at 257.180 kb on + strand, within AMB_RS01150 at 257.573 kb on + strand, within AMB_RS01155 at 257.573 kb on + strand, within AMB_RS01155 at 257.574 kb on - strand, within AMB_RS01155 at 257.574 kb on - strand, within AMB_RS01155 at 257.669 kb on + strand, within AMB_RS01155 at 257.669 kb on + strand, within AMB_RS01155 at 257.670 kb on - strand, within AMB_RS01155 at 257.731 kb on - strand, within AMB_RS01155 at 257.756 kb on - strand, within AMB_RS01155 at 257.829 kb on + strand at 257.829 kb on + strand at 257.829 kb on + strand at 257.830 kb on - strand at 257.833 kb on - strand at 257.859 kb on - strand at 257.918 kb on + strand at 257.919 kb on - strand at 257.990 kb on + strand, within AMB_RS01160 at 258.044 kb on + strand, within AMB_RS01160 at 258.044 kb on + strand, within AMB_RS01160 at 258.044 kb on + strand, within AMB_RS01160 at 258.045 kb on - strand, within AMB_RS01160 at 258.194 kb on + strand, within AMB_RS01160 at 258.194 kb on + strand, within AMB_RS01160 at 258.195 kb on - strand, within AMB_RS01160 at 258.276 kb on + strand, within AMB_RS01160 at 258.359 kb on + strand, within AMB_RS01160 at 258.359 kb on + strand, within AMB_RS01160 at 258.359 kb on + strand, within AMB_RS01160 at 258.360 kb on - strand, within AMB_RS01160 at 258.360 kb on - strand, within AMB_RS01160
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_3 remove 256,124 + -1.7 256,403 + AMB_RS01145 0.25 +2.7 256,404 - AMB_RS01145 0.26 -0.2 256,404 - AMB_RS01145 0.26 -3.0 256,404 - AMB_RS01145 0.26 -0.3 256,404 - AMB_RS01145 0.26 -0.6 256,404 - AMB_RS01145 0.26 -1.0 256,424 + AMB_RS01145 0.28 -1.6 256,436 + AMB_RS01145 0.30 -0.1 256,622 + AMB_RS01145 0.54 -1.5 256,622 + AMB_RS01145 0.54 -0.1 256,622 + AMB_RS01145 0.54 -0.5 256,622 + AMB_RS01145 0.54 -0.3 256,622 + AMB_RS01145 0.54 +0.8 256,623 - AMB_RS01145 0.54 +0.0 256,623 - AMB_RS01145 0.54 -1.5 256,623 - AMB_RS01145 0.54 +0.5 256,697 - AMB_RS01145 0.64 -0.4 256,710 - AMB_RS01145 0.65 +0.6 256,710 - AMB_RS01145 0.65 -0.3 256,710 - AMB_RS01145 0.65 +1.1 256,710 - AMB_RS01145 0.65 +0.4 256,815 - AMB_RS01145 0.79 -0.9 256,961 + +0.1 256,962 - -0.2 256,991 + +1.5 256,991 + -0.4 256,991 + +1.7 256,991 + -1.1 256,992 - +0.4 256,992 - -1.2 256,992 - +1.2 256,992 - -0.3 256,992 - +0.2 257,007 + -0.2 257,007 + -0.6 257,008 - -0.4 257,030 + -3.2 257,030 + -2.7 257,031 - -0.8 257,031 - -0.0 257,180 + AMB_RS01150 0.38 -1.2 257,180 + AMB_RS01150 0.38 -1.1 257,573 + AMB_RS01155 0.33 +1.0 257,573 + AMB_RS01155 0.33 -0.8 257,574 - AMB_RS01155 0.33 +1.6 257,574 - AMB_RS01155 0.33 -0.2 257,669 + AMB_RS01155 0.58 +0.7 257,669 + AMB_RS01155 0.58 -0.5 257,670 - AMB_RS01155 0.58 +0.0 257,731 - AMB_RS01155 0.74 -1.0 257,756 - AMB_RS01155 0.80 -0.1 257,829 + -0.4 257,829 + +0.1 257,829 + -1.3 257,830 - -0.5 257,833 - -0.7 257,859 - +1.4 257,918 + -0.5 257,919 - -0.0 257,990 + AMB_RS01160 0.16 -0.8 258,044 + AMB_RS01160 0.21 -1.2 258,044 + AMB_RS01160 0.21 +0.1 258,044 + AMB_RS01160 0.21 +0.2 258,045 - AMB_RS01160 0.21 -1.1 258,194 + AMB_RS01160 0.34 -0.6 258,194 + AMB_RS01160 0.34 -0.8 258,195 - AMB_RS01160 0.34 -0.4 258,276 + AMB_RS01160 0.42 +0.9 258,359 + AMB_RS01160 0.49 -1.9 258,359 + AMB_RS01160 0.49 -1.1 258,359 + AMB_RS01160 0.49 +0.0 258,360 - AMB_RS01160 0.49 +0.8 258,360 - AMB_RS01160 0.49 +0.3
Or see this region's nucleotide sequence