Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00790

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00785 and AMB_RS00790 are separated by 1 nucleotidesAMB_RS00790 and AMB_RS00795 overlap by 1 nucleotidesAMB_RS00795 and AMB_RS00800 overlap by 4 nucleotides AMB_RS00785: AMB_RS00785 - hypothetical protein, at 178,136 to 179,317 _RS00785 AMB_RS00790: AMB_RS00790 - MBOAT family protein, at 179,319 to 180,770 _RS00790 AMB_RS00795: AMB_RS00795 - LPS biosynthesis protein, at 180,770 to 181,519 _RS00795 AMB_RS00800: AMB_RS00800 - nucleoside-diphosphate-sugar pyrophosphorylase, at 181,516 to 182,259 _RS00800 Position (kb) 179 180 181Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 178.360 kb on - strand, within AMB_RS00785at 178.360 kb on - strand, within AMB_RS00785at 178.641 kb on + strand, within AMB_RS00785at 178.641 kb on + strand, within AMB_RS00785at 178.641 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.738 kb on - strand, within AMB_RS00785at 178.738 kb on - strand, within AMB_RS00785at 178.738 kb on - strand, within AMB_RS00785at 178.738 kb on - strand, within AMB_RS00785at 178.839 kb on + strand, within AMB_RS00785at 178.839 kb on + strand, within AMB_RS00785at 178.839 kb on + strand, within AMB_RS00785at 178.839 kb on + strand, within AMB_RS00785at 178.840 kb on - strand, within AMB_RS00785at 178.840 kb on - strand, within AMB_RS00785at 178.840 kb on - strand, within AMB_RS00785at 178.840 kb on - strand, within AMB_RS00785at 178.968 kb on + strand, within AMB_RS00785at 178.968 kb on + strand, within AMB_RS00785at 179.209 kb on - strandat 179.222 kb on - strandat 179.330 kb on - strandat 179.330 kb on - strandat 179.332 kb on + strandat 179.332 kb on + strandat 179.332 kb on + strandat 179.757 kb on + strand, within AMB_RS00790at 179.757 kb on + strand, within AMB_RS00790at 179.757 kb on + strand, within AMB_RS00790at 179.757 kb on + strand, within AMB_RS00790at 179.757 kb on + strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.878 kb on + strand, within AMB_RS00790at 179.879 kb on - strand, within AMB_RS00790at 179.879 kb on - strand, within AMB_RS00790at 179.884 kb on + strand, within AMB_RS00790at 179.884 kb on + strand, within AMB_RS00790at 179.885 kb on - strand, within AMB_RS00790at 179.885 kb on - strand, within AMB_RS00790at 179.885 kb on - strand, within AMB_RS00790at 179.912 kb on + strand, within AMB_RS00790at 179.912 kb on + strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.953 kb on + strand, within AMB_RS00790at 179.954 kb on - strand, within AMB_RS00790at 180.040 kb on + strand, within AMB_RS00790at 180.040 kb on + strand, within AMB_RS00790at 180.040 kb on + strand, within AMB_RS00790at 180.041 kb on - strand, within AMB_RS00790at 180.041 kb on - strand, within AMB_RS00790at 180.041 kb on - strand, within AMB_RS00790at 180.041 kb on - strand, within AMB_RS00790at 180.055 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.319 kb on + strand, within AMB_RS00790at 180.319 kb on + strand, within AMB_RS00790at 180.319 kb on + strand, within AMB_RS00790at 180.320 kb on - strand, within AMB_RS00790at 180.350 kb on + strand, within AMB_RS00790at 180.370 kb on + strand, within AMB_RS00790at 180.371 kb on - strand, within AMB_RS00790at 180.371 kb on - strand, within AMB_RS00790at 180.481 kb on + strand, within AMB_RS00790at 180.481 kb on + strand, within AMB_RS00790at 180.482 kb on - strand, within AMB_RS00790at 180.622 kb on + strand, within AMB_RS00790at 180.643 kb on + strandat 180.643 kb on + strandat 180.643 kb on + strandat 180.643 kb on + strandat 180.644 kb on - strandat 180.644 kb on - strandat 180.894 kb on + strand, within AMB_RS00795at 180.894 kb on + strand, within AMB_RS00795at 180.894 kb on + strand, within AMB_RS00795at 180.894 kb on + strand, within AMB_RS00795at 180.895 kb on - strand, within AMB_RS00795at 180.895 kb on - strand, within AMB_RS00795at 180.895 kb on - strand, within AMB_RS00795at 180.895 kb on - strand, within AMB_RS00795at 180.895 kb on - strand, within AMB_RS00795at 180.895 kb on - strand, within AMB_RS00795at 180.895 kb on - strand, within AMB_RS00795at 180.898 kb on + strand, within AMB_RS00795at 180.898 kb on + strand, within AMB_RS00795at 180.899 kb on - strand, within AMB_RS00795at 180.899 kb on - strand, within AMB_RS00795at 180.899 kb on - strand, within AMB_RS00795at 180.899 kb on - strand, within AMB_RS00795at 180.899 kb on - strand, within AMB_RS00795at 180.899 kb on - strand, within AMB_RS00795at 180.900 kb on + strand, within AMB_RS00795at 180.901 kb on - strand, within AMB_RS00795at 180.913 kb on + strand, within AMB_RS00795at 180.913 kb on + strand, within AMB_RS00795at 180.913 kb on + strand, within AMB_RS00795at 180.913 kb on + strand, within AMB_RS00795at 180.913 kb on + strand, within AMB_RS00795at 180.913 kb on + strand, within AMB_RS00795at 180.913 kb on + strand, within AMB_RS00795at 180.913 kb on + strand, within AMB_RS00795at 180.914 kb on - strand, within AMB_RS00795at 180.915 kb on + strand, within AMB_RS00795at 180.915 kb on + strand, within AMB_RS00795at 180.915 kb on + strand, within AMB_RS00795at 180.915 kb on + strand, within AMB_RS00795at 180.915 kb on + strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.916 kb on - strand, within AMB_RS00795at 180.993 kb on + strand, within AMB_RS00795at 180.993 kb on + strand, within AMB_RS00795at 180.993 kb on + strand, within AMB_RS00795at 180.993 kb on + strand, within AMB_RS00795at 180.994 kb on - strand, within AMB_RS00795at 180.994 kb on - strand, within AMB_RS00795at 180.994 kb on - strand, within AMB_RS00795at 180.994 kb on - strand, within AMB_RS00795at 180.994 kb on - strand, within AMB_RS00795at 180.996 kb on + strand, within AMB_RS00795at 180.996 kb on + strand, within AMB_RS00795at 180.996 kb on + strand, within AMB_RS00795at 180.996 kb on + strand, within AMB_RS00795at 180.996 kb on + strand, within AMB_RS00795at 180.996 kb on + strand, within AMB_RS00795at 180.996 kb on + strand, within AMB_RS00795at 180.997 kb on - strand, within AMB_RS00795at 180.997 kb on - strand, within AMB_RS00795at 180.997 kb on - strand, within AMB_RS00795at 180.997 kb on - strand, within AMB_RS00795at 180.997 kb on - strand, within AMB_RS00795at 180.997 kb on - strand, within AMB_RS00795at 180.997 kb on - strand, within AMB_RS00795at 181.077 kb on + strand, within AMB_RS00795at 181.077 kb on + strand, within AMB_RS00795at 181.077 kb on + strand, within AMB_RS00795at 181.077 kb on + strand, within AMB_RS00795at 181.078 kb on - strand, within AMB_RS00795at 181.078 kb on - strand, within AMB_RS00795at 181.078 kb on - strand, within AMB_RS00795at 181.078 kb on - strand, within AMB_RS00795at 181.230 kb on + strand, within AMB_RS00795at 181.230 kb on + strand, within AMB_RS00795at 181.231 kb on - strand, within AMB_RS00795at 181.231 kb on - strand, within AMB_RS00795at 181.381 kb on - strand, within AMB_RS00795at 181.452 kb on + strandat 181.452 kb on + strandat 181.452 kb on + strandat 181.453 kb on - strandat 181.453 kb on - strandat 181.453 kb on - strandat 181.453 kb on - strandat 181.739 kb on + strand, within AMB_RS00800at 181.739 kb on + strand, within AMB_RS00800at 181.742 kb on + strand, within AMB_RS00800at 181.742 kb on + strand, within AMB_RS00800at 181.742 kb on + strand, within AMB_RS00800at 181.742 kb on + strand, within AMB_RS00800at 181.742 kb on + strand, within AMB_RS00800at 181.742 kb on + strand, within AMB_RS00800at 181.742 kb on + strand, within AMB_RS00800at 181.742 kb on + strand, within AMB_RS00800at 181.746 kb on - strand, within AMB_RS00800at 181.746 kb on - strand, within AMB_RS00800at 181.746 kb on - strand, within AMB_RS00800at 181.746 kb on - strand, within AMB_RS00800at 181.746 kb on - strand, within AMB_RS00800at 181.746 kb on - strand, within AMB_RS00800

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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178,360 - AMB_RS00785 0.19 -1.7
178,360 - AMB_RS00785 0.19 +0.5
178,641 + AMB_RS00785 0.43 +1.5
178,641 + AMB_RS00785 0.43 +0.5
178,641 + AMB_RS00785 0.43 +0.1
178,737 + AMB_RS00785 0.51 -0.2
178,737 + AMB_RS00785 0.51 -0.3
178,737 + AMB_RS00785 0.51 -1.0
178,737 + AMB_RS00785 0.51 -0.6
178,737 + AMB_RS00785 0.51 +1.3
178,737 + AMB_RS00785 0.51 -1.2
178,737 + AMB_RS00785 0.51 -2.1
178,737 + AMB_RS00785 0.51 -2.2
178,738 - AMB_RS00785 0.51 -0.6
178,738 - AMB_RS00785 0.51 -0.7
178,738 - AMB_RS00785 0.51 -1.1
178,738 - AMB_RS00785 0.51 -0.4
178,839 + AMB_RS00785 0.59 +1.3
178,839 + AMB_RS00785 0.59 +0.2
178,839 + AMB_RS00785 0.59 -0.5
178,839 + AMB_RS00785 0.59 -1.4
178,840 - AMB_RS00785 0.60 +0.3
178,840 - AMB_RS00785 0.60 -1.5
178,840 - AMB_RS00785 0.60 -0.5
178,840 - AMB_RS00785 0.60 -0.1
178,968 + AMB_RS00785 0.70 -1.0
178,968 + AMB_RS00785 0.70 -1.4
179,209 - +0.8
179,222 - -0.7
179,330 - -3.2
179,330 - +0.8
179,332 + -0.5
179,332 + -0.9
179,332 + -1.5
179,757 + AMB_RS00790 0.30 -2.2
179,757 + AMB_RS00790 0.30 +0.4
179,757 + AMB_RS00790 0.30 +0.0
179,757 + AMB_RS00790 0.30 -0.5
179,757 + AMB_RS00790 0.30 -1.0
179,758 - AMB_RS00790 0.30 -2.0
179,758 - AMB_RS00790 0.30 +0.1
179,758 - AMB_RS00790 0.30 -1.9
179,758 - AMB_RS00790 0.30 -1.1
179,758 - AMB_RS00790 0.30 -1.7
179,758 - AMB_RS00790 0.30 -0.5
179,758 - AMB_RS00790 0.30 -0.2
179,758 - AMB_RS00790 0.30 -1.2
179,758 - AMB_RS00790 0.30 +1.5
179,758 - AMB_RS00790 0.30 -0.5
179,758 - AMB_RS00790 0.30 -0.8
179,878 + AMB_RS00790 0.38 +0.7
179,879 - AMB_RS00790 0.39 +0.5
179,879 - AMB_RS00790 0.39 -0.2
179,884 + AMB_RS00790 0.39 -0.3
179,884 + AMB_RS00790 0.39 -1.7
179,885 - AMB_RS00790 0.39 +0.3
179,885 - AMB_RS00790 0.39 -0.8
179,885 - AMB_RS00790 0.39 -0.9
179,912 + AMB_RS00790 0.41 -0.3
179,912 + AMB_RS00790 0.41 +0.5
179,913 - AMB_RS00790 0.41 -0.0
179,913 - AMB_RS00790 0.41 -0.4
179,913 - AMB_RS00790 0.41 -0.8
179,913 - AMB_RS00790 0.41 -0.0
179,913 - AMB_RS00790 0.41 -2.4
179,913 - AMB_RS00790 0.41 +0.9
179,913 - AMB_RS00790 0.41 +0.6
179,953 + AMB_RS00790 0.44 -1.4
179,954 - AMB_RS00790 0.44 -1.7
180,040 + AMB_RS00790 0.50 -1.2
180,040 + AMB_RS00790 0.50 -1.2
180,040 + AMB_RS00790 0.50 -0.5
180,041 - AMB_RS00790 0.50 +0.4
180,041 - AMB_RS00790 0.50 -0.3
180,041 - AMB_RS00790 0.50 -1.4
180,041 - AMB_RS00790 0.50 +0.3
180,055 + AMB_RS00790 0.51 -1.6
180,133 + AMB_RS00790 0.56 -1.8
180,133 + AMB_RS00790 0.56 -1.8
180,133 + AMB_RS00790 0.56 -0.7
180,133 + AMB_RS00790 0.56 -0.5
180,133 + AMB_RS00790 0.56 -0.7
180,133 + AMB_RS00790 0.56 -1.1
180,133 + AMB_RS00790 0.56 -0.0
180,134 - AMB_RS00790 0.56 +1.1
180,134 - AMB_RS00790 0.56 -0.9
180,134 - AMB_RS00790 0.56 -0.6
180,134 - AMB_RS00790 0.56 -0.2
180,134 - AMB_RS00790 0.56 -0.7
180,134 - AMB_RS00790 0.56 -0.3
180,134 - AMB_RS00790 0.56 -1.2
180,319 + AMB_RS00790 0.69 -1.4
180,319 + AMB_RS00790 0.69 -0.4
180,319 + AMB_RS00790 0.69 +0.4
180,320 - AMB_RS00790 0.69 +0.1
180,350 + AMB_RS00790 0.71 -0.1
180,370 + AMB_RS00790 0.72 -1.3
180,371 - AMB_RS00790 0.72 +1.7
180,371 - AMB_RS00790 0.72 -0.1
180,481 + AMB_RS00790 0.80 -0.3
180,481 + AMB_RS00790 0.80 -0.9
180,482 - AMB_RS00790 0.80 -3.2
180,622 + AMB_RS00790 0.90 -1.6
180,643 + -0.4
180,643 + -0.7
180,643 + -3.1
180,643 + -0.5
180,644 - +0.7
180,644 - -0.5
180,894 + AMB_RS00795 0.17 -0.5
180,894 + AMB_RS00795 0.17 -1.5
180,894 + AMB_RS00795 0.17 -2.9
180,894 + AMB_RS00795 0.17 -3.0
180,895 - AMB_RS00795 0.17 -0.8
180,895 - AMB_RS00795 0.17 +2.5
180,895 - AMB_RS00795 0.17 -0.2
180,895 - AMB_RS00795 0.17 -1.5
180,895 - AMB_RS00795 0.17 -0.9
180,895 - AMB_RS00795 0.17 -2.3
180,895 - AMB_RS00795 0.17 +0.5
180,898 + AMB_RS00795 0.17 -1.8
180,898 + AMB_RS00795 0.17 -1.1
180,899 - AMB_RS00795 0.17 +1.1
180,899 - AMB_RS00795 0.17 -1.5
180,899 - AMB_RS00795 0.17 -2.4
180,899 - AMB_RS00795 0.17 -2.9
180,899 - AMB_RS00795 0.17 -4.6
180,899 - AMB_RS00795 0.17 -1.1
180,900 + AMB_RS00795 0.17 +0.5
180,901 - AMB_RS00795 0.17 -1.1
180,913 + AMB_RS00795 0.19 -1.1
180,913 + AMB_RS00795 0.19 -3.0
180,913 + AMB_RS00795 0.19 -0.5
180,913 + AMB_RS00795 0.19 -1.5
180,913 + AMB_RS00795 0.19 -1.1
180,913 + AMB_RS00795 0.19 -1.1
180,913 + AMB_RS00795 0.19 -2.1
180,913 + AMB_RS00795 0.19 -1.5
180,914 - AMB_RS00795 0.19 -3.0
180,915 + AMB_RS00795 0.19 -2.7
180,915 + AMB_RS00795 0.19 -1.2
180,915 + AMB_RS00795 0.19 -1.1
180,915 + AMB_RS00795 0.19 -0.7
180,915 + AMB_RS00795 0.19 -0.6
180,916 - AMB_RS00795 0.19 -1.8
180,916 - AMB_RS00795 0.19 -1.7
180,916 - AMB_RS00795 0.19 -2.8
180,916 - AMB_RS00795 0.19 -1.8
180,916 - AMB_RS00795 0.19 -1.5
180,916 - AMB_RS00795 0.19 -3.8
180,916 - AMB_RS00795 0.19 +1.5
180,916 - AMB_RS00795 0.19 +0.5
180,916 - AMB_RS00795 0.19 -2.3
180,916 - AMB_RS00795 0.19 -3.0
180,916 - AMB_RS00795 0.19 -0.6
180,993 + AMB_RS00795 0.30 -3.1
180,993 + AMB_RS00795 0.30 -0.5
180,993 + AMB_RS00795 0.30 +1.1
180,993 + AMB_RS00795 0.30 -0.7
180,994 - AMB_RS00795 0.30 -1.1
180,994 - AMB_RS00795 0.30 -0.6
180,994 - AMB_RS00795 0.30 -1.9
180,994 - AMB_RS00795 0.30 -1.6
180,994 - AMB_RS00795 0.30 -1.5
180,996 + AMB_RS00795 0.30 -2.1
180,996 + AMB_RS00795 0.30 -0.5
180,996 + AMB_RS00795 0.30 -2.5
180,996 + AMB_RS00795 0.30 -2.7
180,996 + AMB_RS00795 0.30 -1.1
180,996 + AMB_RS00795 0.30 -1.8
180,996 + AMB_RS00795 0.30 -4.0
180,997 - AMB_RS00795 0.30 +0.5
180,997 - AMB_RS00795 0.30 -2.5
180,997 - AMB_RS00795 0.30 -2.3
180,997 - AMB_RS00795 0.30 -2.1
180,997 - AMB_RS00795 0.30 -0.9
180,997 - AMB_RS00795 0.30 -1.2
180,997 - AMB_RS00795 0.30 -1.2
181,077 + AMB_RS00795 0.41 +0.5
181,077 + AMB_RS00795 0.41 -1.1
181,077 + AMB_RS00795 0.41 -2.8
181,077 + AMB_RS00795 0.41 -2.3
181,078 - AMB_RS00795 0.41 -2.7
181,078 - AMB_RS00795 0.41 -0.6
181,078 - AMB_RS00795 0.41 -0.3
181,078 - AMB_RS00795 0.41 +0.2
181,230 + AMB_RS00795 0.61 +0.5
181,230 + AMB_RS00795 0.61 +1.5
181,231 - AMB_RS00795 0.61 +0.0
181,231 - AMB_RS00795 0.61 -0.5
181,381 - AMB_RS00795 0.81 -2.7
181,452 + +0.5
181,452 + -2.6
181,452 + -1.1
181,453 - -0.5
181,453 - +0.5
181,453 - -3.3
181,453 - +0.0
181,739 + AMB_RS00800 0.30 -2.7
181,739 + AMB_RS00800 0.30 -1.5
181,742 + AMB_RS00800 0.30 -0.4
181,742 + AMB_RS00800 0.30 -3.9
181,742 + AMB_RS00800 0.30 +0.9
181,742 + AMB_RS00800 0.30 -1.5
181,742 + AMB_RS00800 0.30 +0.5
181,742 + AMB_RS00800 0.30 -0.5
181,742 + AMB_RS00800 0.30 +2.1
181,742 + AMB_RS00800 0.30 -1.1
181,746 - AMB_RS00800 0.31 -0.5
181,746 - AMB_RS00800 0.31 -2.7
181,746 - AMB_RS00800 0.31 -2.0
181,746 - AMB_RS00800 0.31 +1.4
181,746 - AMB_RS00800 0.31 -0.4
181,746 - AMB_RS00800 0.31 -0.2

Or see this region's nucleotide sequence