Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00550

Experiment: 150_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00545 and AMB_RS00550 are separated by 3 nucleotidesAMB_RS00550 and AMB_RS00555 overlap by 4 nucleotidesAMB_RS00555 and AMB_RS00560 are separated by 8 nucleotides AMB_RS00545: AMB_RS00545 - nucleoside-diphosphate sugar epimerase, at 124,302 to 125,303 _RS00545 AMB_RS00550: AMB_RS00550 - DUF751 domain-containing protein, at 125,307 to 127,205 _RS00550 AMB_RS00555: AMB_RS00555 - glycosyltransferase, at 127,202 to 128,143 _RS00555 AMB_RS00560: AMB_RS00560 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 128,152 to 129,339 _RS00560 Position (kb) 125 126 127 128Strain fitness (log2 ratio) -2 -1 0 1at 125.301 kb on + strandat 125.301 kb on + strandat 125.302 kb on - strandat 125.302 kb on - strandat 128.154 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_3
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125,301 + +1.2
125,301 + -1.8
125,302 - -0.9
125,302 - -0.4
128,154 - -1.0

Or see this region's nucleotide sequence