Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18190

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18185 and ABIE41_RS18190 overlap by 44 nucleotidesABIE41_RS18190 and ABIE41_RS18195 are separated by 247 nucleotidesABIE41_RS18195 and ABIE41_RS18200 overlap by 1 nucleotides ABIE41_RS18185: ABIE41_RS18185 - DNA polymerase IV, at 3,744,459 to 3,745,781 _RS18185 ABIE41_RS18190: ABIE41_RS18190 - cell envelope integrity EipB family protein, at 3,745,738 to 3,746,574 _RS18190 ABIE41_RS18195: ABIE41_RS18195 - RidA family protein, at 3,746,822 to 3,747,295 _RS18195 ABIE41_RS18200: ABIE41_RS18200 - glycerophosphodiester phosphodiesterase family protein, at 3,747,295 to 3,748,074 _RS18200 Position (kb) 3745 3746 3747Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3744.789 kb on + strand, within ABIE41_RS18185at 3744.789 kb on + strand, within ABIE41_RS18185at 3744.789 kb on + strand, within ABIE41_RS18185at 3744.790 kb on - strand, within ABIE41_RS18185at 3744.790 kb on - strand, within ABIE41_RS18185at 3744.790 kb on - strand, within ABIE41_RS18185at 3745.740 kb on - strandat 3745.740 kb on - strandat 3745.762 kb on + strandat 3745.844 kb on + strand, within ABIE41_RS18190at 3745.845 kb on - strand, within ABIE41_RS18190at 3745.866 kb on - strand, within ABIE41_RS18190at 3745.866 kb on - strand, within ABIE41_RS18190at 3745.901 kb on + strand, within ABIE41_RS18190at 3746.039 kb on + strand, within ABIE41_RS18190at 3746.039 kb on + strand, within ABIE41_RS18190at 3746.040 kb on - strand, within ABIE41_RS18190at 3746.040 kb on - strand, within ABIE41_RS18190at 3746.357 kb on + strand, within ABIE41_RS18190at 3746.357 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.454 kb on - strand, within ABIE41_RS18190at 3746.611 kb on - strandat 3746.894 kb on + strand, within ABIE41_RS18195at 3746.894 kb on + strand, within ABIE41_RS18195at 3746.895 kb on - strand, within ABIE41_RS18195at 3746.903 kb on + strand, within ABIE41_RS18195at 3746.903 kb on + strand, within ABIE41_RS18195at 3746.903 kb on + strand, within ABIE41_RS18195at 3746.903 kb on + strand, within ABIE41_RS18195at 3746.903 kb on + strand, within ABIE41_RS18195at 3746.903 kb on + strand, within ABIE41_RS18195at 3746.903 kb on + strand, within ABIE41_RS18195at 3746.903 kb on + strand, within ABIE41_RS18195at 3746.904 kb on - strand, within ABIE41_RS18195

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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3,744,789 + ABIE41_RS18185 0.25 +1.8
3,744,789 + ABIE41_RS18185 0.25 -0.0
3,744,789 + ABIE41_RS18185 0.25 +0.6
3,744,790 - ABIE41_RS18185 0.25 -1.3
3,744,790 - ABIE41_RS18185 0.25 -1.8
3,744,790 - ABIE41_RS18185 0.25 -2.2
3,745,740 - +2.4
3,745,740 - +0.0
3,745,762 + -2.9
3,745,844 + ABIE41_RS18190 0.13 +0.4
3,745,845 - ABIE41_RS18190 0.13 +0.6
3,745,866 - ABIE41_RS18190 0.15 +0.4
3,745,866 - ABIE41_RS18190 0.15 +0.3
3,745,901 + ABIE41_RS18190 0.19 +0.9
3,746,039 + ABIE41_RS18190 0.36 +0.1
3,746,039 + ABIE41_RS18190 0.36 -3.0
3,746,040 - ABIE41_RS18190 0.36 -1.0
3,746,040 - ABIE41_RS18190 0.36 -2.1
3,746,357 + ABIE41_RS18190 0.74 +0.4
3,746,357 + ABIE41_RS18190 0.74 +0.3
3,746,453 + ABIE41_RS18190 0.85 +0.7
3,746,453 + ABIE41_RS18190 0.85 -0.2
3,746,453 + ABIE41_RS18190 0.85 +1.5
3,746,453 + ABIE41_RS18190 0.85 +0.9
3,746,453 + ABIE41_RS18190 0.85 -0.2
3,746,454 - ABIE41_RS18190 0.86 +0.3
3,746,611 - +0.5
3,746,894 + ABIE41_RS18195 0.15 -2.1
3,746,894 + ABIE41_RS18195 0.15 -1.1
3,746,895 - ABIE41_RS18195 0.15 -0.2
3,746,903 + ABIE41_RS18195 0.17 +1.5
3,746,903 + ABIE41_RS18195 0.17 -1.6
3,746,903 + ABIE41_RS18195 0.17 +0.2
3,746,903 + ABIE41_RS18195 0.17 -0.3
3,746,903 + ABIE41_RS18195 0.17 +0.9
3,746,903 + ABIE41_RS18195 0.17 -0.5
3,746,903 + ABIE41_RS18195 0.17 -0.2
3,746,903 + ABIE41_RS18195 0.17 -1.1
3,746,904 - ABIE41_RS18195 0.17 -0.6

Or see this region's nucleotide sequence