Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18185 and ABIE41_RS18190 overlap by 44 nucleotides ABIE41_RS18190 and ABIE41_RS18195 are separated by 247 nucleotides ABIE41_RS18195 and ABIE41_RS18200 overlap by 1 nucleotides
ABIE41_RS18185: ABIE41_RS18185 - DNA polymerase IV, at 3,744,459 to 3,745,781
_RS18185
ABIE41_RS18190: ABIE41_RS18190 - cell envelope integrity EipB family protein, at 3,745,738 to 3,746,574
_RS18190
ABIE41_RS18195: ABIE41_RS18195 - RidA family protein, at 3,746,822 to 3,747,295
_RS18195
ABIE41_RS18200: ABIE41_RS18200 - glycerophosphodiester phosphodiesterase family protein, at 3,747,295 to 3,748,074
_RS18200
Position (kb)
3745
3746
3747 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3744.789 kb on + strand, within ABIE41_RS18185 at 3744.789 kb on + strand, within ABIE41_RS18185 at 3744.789 kb on + strand, within ABIE41_RS18185 at 3744.790 kb on - strand, within ABIE41_RS18185 at 3744.790 kb on - strand, within ABIE41_RS18185 at 3744.790 kb on - strand, within ABIE41_RS18185 at 3745.740 kb on - strand at 3745.740 kb on - strand at 3745.762 kb on + strand at 3745.844 kb on + strand, within ABIE41_RS18190 at 3745.845 kb on - strand, within ABIE41_RS18190 at 3745.866 kb on - strand, within ABIE41_RS18190 at 3745.866 kb on - strand, within ABIE41_RS18190 at 3745.901 kb on + strand, within ABIE41_RS18190 at 3746.039 kb on + strand, within ABIE41_RS18190 at 3746.039 kb on + strand, within ABIE41_RS18190 at 3746.040 kb on - strand, within ABIE41_RS18190 at 3746.040 kb on - strand, within ABIE41_RS18190 at 3746.357 kb on + strand, within ABIE41_RS18190 at 3746.357 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.454 kb on - strand, within ABIE41_RS18190 at 3746.611 kb on - strand at 3746.894 kb on + strand, within ABIE41_RS18195 at 3746.894 kb on + strand, within ABIE41_RS18195 at 3746.895 kb on - strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.904 kb on - strand, within ABIE41_RS18195
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 3,744,789 + ABIE41_RS18185 0.25 +1.8 3,744,789 + ABIE41_RS18185 0.25 -0.0 3,744,789 + ABIE41_RS18185 0.25 +0.6 3,744,790 - ABIE41_RS18185 0.25 -1.3 3,744,790 - ABIE41_RS18185 0.25 -1.8 3,744,790 - ABIE41_RS18185 0.25 -2.2 3,745,740 - +2.4 3,745,740 - +0.0 3,745,762 + -2.9 3,745,844 + ABIE41_RS18190 0.13 +0.4 3,745,845 - ABIE41_RS18190 0.13 +0.6 3,745,866 - ABIE41_RS18190 0.15 +0.4 3,745,866 - ABIE41_RS18190 0.15 +0.3 3,745,901 + ABIE41_RS18190 0.19 +0.9 3,746,039 + ABIE41_RS18190 0.36 +0.1 3,746,039 + ABIE41_RS18190 0.36 -3.0 3,746,040 - ABIE41_RS18190 0.36 -1.0 3,746,040 - ABIE41_RS18190 0.36 -2.1 3,746,357 + ABIE41_RS18190 0.74 +0.4 3,746,357 + ABIE41_RS18190 0.74 +0.3 3,746,453 + ABIE41_RS18190 0.85 +0.7 3,746,453 + ABIE41_RS18190 0.85 -0.2 3,746,453 + ABIE41_RS18190 0.85 +1.5 3,746,453 + ABIE41_RS18190 0.85 +0.9 3,746,453 + ABIE41_RS18190 0.85 -0.2 3,746,454 - ABIE41_RS18190 0.86 +0.3 3,746,611 - +0.5 3,746,894 + ABIE41_RS18195 0.15 -2.1 3,746,894 + ABIE41_RS18195 0.15 -1.1 3,746,895 - ABIE41_RS18195 0.15 -0.2 3,746,903 + ABIE41_RS18195 0.17 +1.5 3,746,903 + ABIE41_RS18195 0.17 -1.6 3,746,903 + ABIE41_RS18195 0.17 +0.2 3,746,903 + ABIE41_RS18195 0.17 -0.3 3,746,903 + ABIE41_RS18195 0.17 +0.9 3,746,903 + ABIE41_RS18195 0.17 -0.5 3,746,903 + ABIE41_RS18195 0.17 -0.2 3,746,903 + ABIE41_RS18195 0.17 -1.1 3,746,904 - ABIE41_RS18195 0.17 -0.6
Or see this region's nucleotide sequence