Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02210

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02205 and ABIE41_RS02210 are separated by 101 nucleotidesABIE41_RS02210 and ABIE41_RS02215 are separated by 39 nucleotidesABIE41_RS02215 and ABIE41_RS02220 are separated by 8 nucleotides ABIE41_RS02205: ABIE41_RS02205 - ABC transporter substrate-binding protein, at 440,159 to 441,706 _RS02205 ABIE41_RS02210: ABIE41_RS02210 - amidase, at 441,808 to 443,232 _RS02210 ABIE41_RS02215: ABIE41_RS02215 - hypothetical protein, at 443,272 to 443,463 _RS02215 ABIE41_RS02220: ABIE41_RS02220 - amidase, at 443,472 to 444,890 _RS02220 Position (kb) 441 442 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 440.963 kb on + strand, within ABIE41_RS02205at 440.963 kb on + strand, within ABIE41_RS02205at 440.964 kb on - strand, within ABIE41_RS02205at 440.964 kb on - strand, within ABIE41_RS02205at 440.981 kb on + strand, within ABIE41_RS02205at 440.981 kb on + strand, within ABIE41_RS02205at 440.981 kb on + strand, within ABIE41_RS02205at 440.982 kb on - strand, within ABIE41_RS02205at 441.117 kb on - strand, within ABIE41_RS02205at 441.128 kb on + strand, within ABIE41_RS02205at 441.128 kb on + strand, within ABIE41_RS02205at 441.128 kb on + strand, within ABIE41_RS02205at 441.128 kb on + strand, within ABIE41_RS02205at 441.128 kb on + strand, within ABIE41_RS02205at 441.128 kb on + strand, within ABIE41_RS02205at 441.129 kb on - strand, within ABIE41_RS02205at 441.146 kb on + strand, within ABIE41_RS02205at 441.152 kb on + strand, within ABIE41_RS02205at 441.152 kb on + strand, within ABIE41_RS02205at 441.152 kb on + strand, within ABIE41_RS02205at 441.153 kb on - strand, within ABIE41_RS02205at 441.197 kb on + strand, within ABIE41_RS02205at 441.198 kb on - strand, within ABIE41_RS02205at 441.378 kb on - strand, within ABIE41_RS02205at 441.950 kb on + strandat 441.950 kb on - strandat 441.951 kb on - strand, within ABIE41_RS02210at 442.325 kb on + strand, within ABIE41_RS02210at 442.326 kb on - strand, within ABIE41_RS02210at 442.326 kb on - strand, within ABIE41_RS02210at 442.396 kb on + strand, within ABIE41_RS02210at 442.397 kb on - strand, within ABIE41_RS02210at 442.397 kb on - strand, within ABIE41_RS02210at 442.502 kb on + strand, within ABIE41_RS02210at 442.503 kb on - strand, within ABIE41_RS02210at 442.693 kb on - strand, within ABIE41_RS02210at 442.810 kb on + strand, within ABIE41_RS02210at 442.811 kb on - strand, within ABIE41_RS02210at 442.867 kb on + strand, within ABIE41_RS02210at 442.867 kb on + strand, within ABIE41_RS02210at 442.868 kb on - strand, within ABIE41_RS02210at 442.868 kb on - strand, within ABIE41_RS02210at 442.868 kb on - strand, within ABIE41_RS02210at 442.868 kb on - strand, within ABIE41_RS02210at 443.137 kb on + strandat 443.138 kb on - strandat 443.155 kb on + strandat 443.155 kb on + strandat 443.156 kb on - strandat 443.156 kb on - strandat 443.156 kb on - strandat 443.156 kb on - strandat 443.156 kb on - strandat 443.156 kb on - strandat 443.231 kb on - strandat 443.324 kb on - strand, within ABIE41_RS02215at 443.419 kb on + strand, within ABIE41_RS02215at 443.419 kb on + strand, within ABIE41_RS02215at 443.419 kb on + strand, within ABIE41_RS02215at 443.419 kb on + strand, within ABIE41_RS02215at 443.419 kb on + strand, within ABIE41_RS02215at 443.420 kb on - strand, within ABIE41_RS02215at 443.420 kb on - strand, within ABIE41_RS02215at 443.420 kb on - strand, within ABIE41_RS02215at 443.420 kb on - strand, within ABIE41_RS02215at 443.559 kb on + strandat 443.559 kb on + strandat 443.559 kb on + strandat 443.559 kb on + strandat 443.559 kb on + strandat 443.559 kb on + strandat 443.559 kb on + strandat 443.560 kb on - strandat 443.560 kb on - strandat 443.560 kb on - strandat 443.560 kb on - strandat 443.560 kb on - strandat 443.673 kb on + strand, within ABIE41_RS02220at 443.674 kb on - strand, within ABIE41_RS02220at 443.674 kb on - strand, within ABIE41_RS02220at 443.674 kb on - strand, within ABIE41_RS02220at 443.718 kb on + strand, within ABIE41_RS02220at 443.718 kb on + strand, within ABIE41_RS02220at 443.718 kb on + strand, within ABIE41_RS02220at 443.718 kb on + strand, within ABIE41_RS02220at 443.718 kb on + strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.719 kb on - strand, within ABIE41_RS02220at 443.760 kb on + strand, within ABIE41_RS02220at 443.761 kb on - strand, within ABIE41_RS02220at 444.057 kb on + strand, within ABIE41_RS02220at 444.057 kb on + strand, within ABIE41_RS02220at 444.057 kb on + strand, within ABIE41_RS02220at 444.057 kb on + strand, within ABIE41_RS02220at 444.057 kb on + strand, within ABIE41_RS02220at 444.058 kb on - strand, within ABIE41_RS02220at 444.058 kb on - strand, within ABIE41_RS02220at 444.058 kb on - strand, within ABIE41_RS02220at 444.058 kb on - strand, within ABIE41_RS02220

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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440,963 + ABIE41_RS02205 0.52 -0.6
440,963 + ABIE41_RS02205 0.52 -0.1
440,964 - ABIE41_RS02205 0.52 +0.2
440,964 - ABIE41_RS02205 0.52 -0.2
440,981 + ABIE41_RS02205 0.53 -1.0
440,981 + ABIE41_RS02205 0.53 -1.3
440,981 + ABIE41_RS02205 0.53 +0.2
440,982 - ABIE41_RS02205 0.53 -0.8
441,117 - ABIE41_RS02205 0.62 +0.9
441,128 + ABIE41_RS02205 0.63 +0.2
441,128 + ABIE41_RS02205 0.63 +1.3
441,128 + ABIE41_RS02205 0.63 -0.1
441,128 + ABIE41_RS02205 0.63 -1.6
441,128 + ABIE41_RS02205 0.63 -0.8
441,128 + ABIE41_RS02205 0.63 -2.6
441,129 - ABIE41_RS02205 0.63 -0.2
441,146 + ABIE41_RS02205 0.64 -0.2
441,152 + ABIE41_RS02205 0.64 +0.5
441,152 + ABIE41_RS02205 0.64 -0.1
441,152 + ABIE41_RS02205 0.64 -1.5
441,153 - ABIE41_RS02205 0.64 +0.4
441,197 + ABIE41_RS02205 0.67 +0.9
441,198 - ABIE41_RS02205 0.67 -1.8
441,378 - ABIE41_RS02205 0.79 -0.7
441,950 + +0.1
441,950 - -0.2
441,951 - ABIE41_RS02210 0.10 -0.7
442,325 + ABIE41_RS02210 0.36 +0.3
442,326 - ABIE41_RS02210 0.36 +0.5
442,326 - ABIE41_RS02210 0.36 -0.8
442,396 + ABIE41_RS02210 0.41 -1.1
442,397 - ABIE41_RS02210 0.41 -1.1
442,397 - ABIE41_RS02210 0.41 -1.8
442,502 + ABIE41_RS02210 0.49 -0.3
442,503 - ABIE41_RS02210 0.49 +0.0
442,693 - ABIE41_RS02210 0.62 +0.4
442,810 + ABIE41_RS02210 0.70 -0.3
442,811 - ABIE41_RS02210 0.70 +0.1
442,867 + ABIE41_RS02210 0.74 +0.4
442,867 + ABIE41_RS02210 0.74 -0.6
442,868 - ABIE41_RS02210 0.74 -0.3
442,868 - ABIE41_RS02210 0.74 +0.4
442,868 - ABIE41_RS02210 0.74 +0.0
442,868 - ABIE41_RS02210 0.74 -2.3
443,137 + +0.5
443,138 - -1.5
443,155 + +0.5
443,155 + -2.1
443,156 - -1.6
443,156 - -0.6
443,156 - -1.5
443,156 - -0.5
443,156 - -2.2
443,156 - +0.3
443,231 - +1.5
443,324 - ABIE41_RS02215 0.27 -0.2
443,419 + ABIE41_RS02215 0.77 -0.2
443,419 + ABIE41_RS02215 0.77 -0.7
443,419 + ABIE41_RS02215 0.77 +0.9
443,419 + ABIE41_RS02215 0.77 +0.6
443,419 + ABIE41_RS02215 0.77 -2.1
443,420 - ABIE41_RS02215 0.77 -2.0
443,420 - ABIE41_RS02215 0.77 -0.0
443,420 - ABIE41_RS02215 0.77 -0.8
443,420 - ABIE41_RS02215 0.77 +1.2
443,559 + +0.7
443,559 + +0.0
443,559 + +0.1
443,559 + -0.8
443,559 + -0.1
443,559 + -0.4
443,559 + -0.3
443,560 - +0.2
443,560 - -0.2
443,560 - -1.4
443,560 - +0.8
443,560 - +0.1
443,673 + ABIE41_RS02220 0.14 -0.5
443,674 - ABIE41_RS02220 0.14 -0.7
443,674 - ABIE41_RS02220 0.14 -0.5
443,674 - ABIE41_RS02220 0.14 -1.5
443,718 + ABIE41_RS02220 0.17 -2.9
443,718 + ABIE41_RS02220 0.17 -0.9
443,718 + ABIE41_RS02220 0.17 -0.8
443,718 + ABIE41_RS02220 0.17 -1.0
443,718 + ABIE41_RS02220 0.17 -2.0
443,719 - ABIE41_RS02220 0.17 +1.1
443,719 - ABIE41_RS02220 0.17 -0.1
443,719 - ABIE41_RS02220 0.17 -0.3
443,719 - ABIE41_RS02220 0.17 -0.1
443,719 - ABIE41_RS02220 0.17 -0.2
443,719 - ABIE41_RS02220 0.17 +0.2
443,719 - ABIE41_RS02220 0.17 +0.0
443,719 - ABIE41_RS02220 0.17 -1.1
443,719 - ABIE41_RS02220 0.17 -0.5
443,719 - ABIE41_RS02220 0.17 -1.8
443,719 - ABIE41_RS02220 0.17 -0.5
443,719 - ABIE41_RS02220 0.17 +0.2
443,719 - ABIE41_RS02220 0.17 +2.3
443,760 + ABIE41_RS02220 0.20 +0.0
443,761 - ABIE41_RS02220 0.20 -0.1
444,057 + ABIE41_RS02220 0.41 -0.2
444,057 + ABIE41_RS02220 0.41 -0.5
444,057 + ABIE41_RS02220 0.41 -0.2
444,057 + ABIE41_RS02220 0.41 +1.3
444,057 + ABIE41_RS02220 0.41 +0.3
444,058 - ABIE41_RS02220 0.41 -3.7
444,058 - ABIE41_RS02220 0.41 -0.1
444,058 - ABIE41_RS02220 0.41 +0.6
444,058 - ABIE41_RS02220 0.41 -0.3

Or see this region's nucleotide sequence