Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28980 and ABIE40_RS28985 are separated by 138 nucleotides
ABIE40_RS28980: ABIE40_RS28980 - PHB depolymerase family esterase, at 492,982 to 494,070
_RS28980
ABIE40_RS28985: ABIE40_RS28985 - fatty acid desaturase, at 494,209 to 495,240
_RS28985
Position (kb) 494
495
496 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 493.292 kb on + strand, within ABIE40_RS28980 at 493.292 kb on + strand, within ABIE40_RS28980 at 493.292 kb on + strand, within ABIE40_RS28980 at 493.293 kb on - strand, within ABIE40_RS28980 at 493.293 kb on - strand, within ABIE40_RS28980 at 493.550 kb on + strand, within ABIE40_RS28980 at 493.551 kb on - strand, within ABIE40_RS28980 at 493.566 kb on + strand, within ABIE40_RS28980 at 493.656 kb on + strand, within ABIE40_RS28980 at 493.656 kb on + strand, within ABIE40_RS28980 at 493.657 kb on - strand, within ABIE40_RS28980 at 493.657 kb on - strand, within ABIE40_RS28980 at 493.668 kb on + strand, within ABIE40_RS28980 at 493.669 kb on - strand, within ABIE40_RS28980 at 493.689 kb on + strand, within ABIE40_RS28980 at 493.689 kb on + strand, within ABIE40_RS28980 at 493.689 kb on + strand, within ABIE40_RS28980 at 493.690 kb on - strand, within ABIE40_RS28980 at 493.937 kb on + strand, within ABIE40_RS28980 at 493.937 kb on + strand, within ABIE40_RS28980 at 493.937 kb on + strand, within ABIE40_RS28980 at 493.937 kb on + strand, within ABIE40_RS28980 at 493.937 kb on + strand, within ABIE40_RS28980 at 493.937 kb on + strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.938 kb on - strand, within ABIE40_RS28980 at 493.940 kb on + strand, within ABIE40_RS28980 at 493.941 kb on - strand, within ABIE40_RS28980 at 493.966 kb on - strand at 493.966 kb on - strand at 493.971 kb on + strand at 494.084 kb on + strand at 494.119 kb on + strand at 494.119 kb on + strand at 494.119 kb on + strand at 494.119 kb on + strand at 494.119 kb on + strand at 494.120 kb on - strand at 494.149 kb on - strand at 494.181 kb on + strand at 494.201 kb on + strand at 494.202 kb on - strand at 494.202 kb on - strand at 494.202 kb on - strand at 494.363 kb on + strand, within ABIE40_RS28985 at 494.418 kb on + strand, within ABIE40_RS28985 at 494.418 kb on + strand, within ABIE40_RS28985 at 494.447 kb on + strand, within ABIE40_RS28985 at 494.474 kb on + strand, within ABIE40_RS28985 at 494.474 kb on + strand, within ABIE40_RS28985 at 494.475 kb on - strand, within ABIE40_RS28985 at 494.534 kb on + strand, within ABIE40_RS28985 at 494.534 kb on + strand, within ABIE40_RS28985 at 494.534 kb on + strand, within ABIE40_RS28985 at 494.534 kb on + strand, within ABIE40_RS28985 at 494.534 kb on + strand, within ABIE40_RS28985 at 494.535 kb on - strand, within ABIE40_RS28985 at 494.535 kb on - strand, within ABIE40_RS28985 at 494.535 kb on - strand, within ABIE40_RS28985 at 494.535 kb on - strand, within ABIE40_RS28985 at 494.590 kb on + strand, within ABIE40_RS28985 at 494.591 kb on - strand, within ABIE40_RS28985 at 494.790 kb on + strand, within ABIE40_RS28985 at 494.814 kb on - strand, within ABIE40_RS28985 at 494.836 kb on + strand, within ABIE40_RS28985 at 494.836 kb on + strand, within ABIE40_RS28985 at 494.837 kb on - strand, within ABIE40_RS28985 at 494.837 kb on - strand, within ABIE40_RS28985 at 494.889 kb on + strand, within ABIE40_RS28985 at 494.890 kb on - strand, within ABIE40_RS28985 at 494.890 kb on - strand, within ABIE40_RS28985 at 494.912 kb on + strand, within ABIE40_RS28985 at 495.065 kb on + strand, within ABIE40_RS28985 at 495.100 kb on + strand, within ABIE40_RS28985 at 495.101 kb on - strand, within ABIE40_RS28985 at 495.101 kb on - strand, within ABIE40_RS28985 at 495.101 kb on - strand, within ABIE40_RS28985 at 495.101 kb on - strand, within ABIE40_RS28985 at 495.162 kb on + strand at 495.167 kb on + strand at 495.167 kb on + strand at 495.168 kb on - strand at 495.171 kb on + strand at 495.171 kb on + strand at 495.172 kb on - strand at 495.172 kb on - strand at 495.193 kb on + strand at 495.194 kb on - strand at 495.228 kb on + strand at 495.228 kb on + strand at 495.288 kb on + strand at 495.288 kb on + strand at 495.288 kb on + strand at 495.288 kb on + strand at 495.289 kb on - strand at 495.342 kb on + strand at 495.342 kb on + strand at 495.343 kb on - strand at 495.525 kb on + strand at 495.526 kb on - strand at 495.526 kb on - strand at 495.526 kb on - strand at 495.619 kb on - strand at 495.751 kb on + strand at 495.752 kb on - strand at 495.752 kb on - strand at 495.752 kb on - strand at 495.752 kb on - strand at 495.752 kb on - strand at 495.784 kb on + strand at 495.830 kb on + strand at 495.846 kb on - strand at 495.847 kb on + strand at 495.847 kb on + strand at 495.847 kb on + strand at 495.847 kb on + strand at 495.847 kb on + strand at 495.847 kb on + strand at 495.847 kb on + strand at 495.847 kb on + strand at 495.848 kb on - strand at 495.848 kb on - strand at 495.848 kb on - strand at 495.848 kb on - strand at 495.848 kb on - strand at 495.848 kb on - strand at 495.848 kb on - strand at 495.848 kb on - strand at 495.849 kb on + strand at 495.849 kb on + strand at 495.849 kb on + strand at 495.849 kb on + strand at 495.849 kb on + strand at 495.849 kb on + strand at 495.850 kb on - strand at 495.850 kb on - strand at 495.850 kb on - strand at 495.850 kb on - strand at 495.914 kb on + strand at 495.915 kb on - strand at 495.987 kb on + strand at 495.990 kb on + strand at 495.991 kb on - strand at 495.991 kb on - strand at 495.991 kb on - strand at 495.991 kb on - strand at 495.991 kb on - strand at 495.991 kb on - strand at 495.991 kb on - strand at 495.991 kb on - strand at 496.069 kb on + strand at 496.069 kb on + strand at 496.069 kb on + strand at 496.069 kb on + strand at 496.070 kb on - strand at 496.070 kb on - strand at 496.070 kb on - strand at 496.070 kb on - strand at 496.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 493,292 + ABIE40_RS28980 0.28 -2.3 493,292 + ABIE40_RS28980 0.28 -0.2 493,292 + ABIE40_RS28980 0.28 -2.3 493,293 - ABIE40_RS28980 0.29 +0.2 493,293 - ABIE40_RS28980 0.29 -0.3 493,550 + ABIE40_RS28980 0.52 -0.6 493,551 - ABIE40_RS28980 0.52 -3.7 493,566 + ABIE40_RS28980 0.54 -0.4 493,656 + ABIE40_RS28980 0.62 -2.1 493,656 + ABIE40_RS28980 0.62 +0.0 493,657 - ABIE40_RS28980 0.62 -0.1 493,657 - ABIE40_RS28980 0.62 +0.4 493,668 + ABIE40_RS28980 0.63 +0.9 493,669 - ABIE40_RS28980 0.63 +0.1 493,689 + ABIE40_RS28980 0.65 -2.4 493,689 + ABIE40_RS28980 0.65 -2.2 493,689 + ABIE40_RS28980 0.65 -1.5 493,690 - ABIE40_RS28980 0.65 -0.1 493,937 + ABIE40_RS28980 0.88 -1.8 493,937 + ABIE40_RS28980 0.88 -2.3 493,937 + ABIE40_RS28980 0.88 -1.5 493,937 + ABIE40_RS28980 0.88 +0.3 493,937 + ABIE40_RS28980 0.88 +1.1 493,937 + ABIE40_RS28980 0.88 -0.2 493,938 - ABIE40_RS28980 0.88 -1.8 493,938 - ABIE40_RS28980 0.88 -2.2 493,938 - ABIE40_RS28980 0.88 +0.7 493,938 - ABIE40_RS28980 0.88 +0.8 493,938 - ABIE40_RS28980 0.88 -2.9 493,938 - ABIE40_RS28980 0.88 -0.4 493,938 - ABIE40_RS28980 0.88 +1.1 493,938 - ABIE40_RS28980 0.88 +0.2 493,938 - ABIE40_RS28980 0.88 -1.8 493,938 - ABIE40_RS28980 0.88 -0.5 493,938 - ABIE40_RS28980 0.88 -0.2 493,938 - ABIE40_RS28980 0.88 -3.9 493,940 + ABIE40_RS28980 0.88 -1.9 493,941 - ABIE40_RS28980 0.88 -0.2 493,966 - +0.6 493,966 - -3.1 493,971 + -2.1 494,084 + +0.7 494,119 + +0.8 494,119 + +1.3 494,119 + +0.4 494,119 + +0.3 494,119 + +0.8 494,120 - -2.4 494,149 - -0.4 494,181 + -0.2 494,201 + -2.4 494,202 - +0.1 494,202 - -1.7 494,202 - -2.2 494,363 + ABIE40_RS28985 0.15 +0.0 494,418 + ABIE40_RS28985 0.20 +1.4 494,418 + ABIE40_RS28985 0.20 -2.1 494,447 + ABIE40_RS28985 0.23 -0.3 494,474 + ABIE40_RS28985 0.26 +0.7 494,474 + ABIE40_RS28985 0.26 +0.1 494,475 - ABIE40_RS28985 0.26 -0.3 494,534 + ABIE40_RS28985 0.31 -0.4 494,534 + ABIE40_RS28985 0.31 +1.7 494,534 + ABIE40_RS28985 0.31 +1.2 494,534 + ABIE40_RS28985 0.31 +0.1 494,534 + ABIE40_RS28985 0.31 +0.9 494,535 - ABIE40_RS28985 0.32 -1.5 494,535 - ABIE40_RS28985 0.32 +0.2 494,535 - ABIE40_RS28985 0.32 +0.4 494,535 - ABIE40_RS28985 0.32 -0.5 494,590 + ABIE40_RS28985 0.37 +0.9 494,591 - ABIE40_RS28985 0.37 -1.4 494,790 + ABIE40_RS28985 0.56 -0.9 494,814 - ABIE40_RS28985 0.59 +0.5 494,836 + ABIE40_RS28985 0.61 -0.3 494,836 + ABIE40_RS28985 0.61 -0.8 494,837 - ABIE40_RS28985 0.61 -0.6 494,837 - ABIE40_RS28985 0.61 +2.2 494,889 + ABIE40_RS28985 0.66 +1.7 494,890 - ABIE40_RS28985 0.66 -1.6 494,890 - ABIE40_RS28985 0.66 +0.5 494,912 + ABIE40_RS28985 0.68 -0.7 495,065 + ABIE40_RS28985 0.83 -0.2 495,100 + ABIE40_RS28985 0.86 +0.4 495,101 - ABIE40_RS28985 0.86 -0.5 495,101 - ABIE40_RS28985 0.86 +0.4 495,101 - ABIE40_RS28985 0.86 -0.9 495,101 - ABIE40_RS28985 0.86 +1.0 495,162 + -1.1 495,167 + -0.9 495,167 + -1.6 495,168 - +0.9 495,171 + -0.3 495,171 + +0.8 495,172 - +0.8 495,172 - +2.1 495,193 + +0.4 495,194 - -0.2 495,228 + +0.4 495,228 + +0.4 495,288 + -2.1 495,288 + -1.4 495,288 + +0.8 495,288 + +1.7 495,289 - -1.0 495,342 + +0.2 495,342 + -0.2 495,343 - +0.6 495,525 + -0.7 495,526 - -0.5 495,526 - -0.3 495,526 - -0.3 495,619 - +0.3 495,751 + +1.5 495,752 - +0.9 495,752 - +0.5 495,752 - -0.3 495,752 - -2.5 495,752 - -2.0 495,784 + -1.5 495,830 + +0.5 495,846 - -0.3 495,847 + -3.1 495,847 + +0.3 495,847 + +1.2 495,847 + -0.6 495,847 + +0.7 495,847 + +0.0 495,847 + -1.2 495,847 + -3.1 495,848 - +1.4 495,848 - +0.6 495,848 - -0.4 495,848 - +0.2 495,848 - +2.2 495,848 - -1.5 495,848 - -0.2 495,848 - +0.3 495,849 + -0.3 495,849 + -0.7 495,849 + -1.2 495,849 + -0.4 495,849 + +0.4 495,849 + +0.5 495,850 - +0.4 495,850 - -0.4 495,850 - -0.2 495,850 - -0.3 495,914 + +0.7 495,915 - -2.2 495,987 + -4.1 495,990 + -2.7 495,991 - -2.5 495,991 - -1.7 495,991 - +0.1 495,991 - -0.5 495,991 - +0.2 495,991 - +0.1 495,991 - -1.2 495,991 - -2.5 496,069 + +0.0 496,069 + +0.0 496,069 + +1.7 496,069 + -0.8 496,070 - -0.2 496,070 - -1.2 496,070 - +0.8 496,070 - +0.9 496,070 - -0.1
Or see this region's nucleotide sequence