Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS26845 and ABIE40_RS26850 are separated by 52 nucleotides ABIE40_RS26850 and ABIE40_RS26855 are separated by 12 nucleotides ABIE40_RS26855 and ABIE40_RS26860 are separated by 242 nucleotides
ABIE40_RS26845: ABIE40_RS26845 - hypothetical protein, at 91,163 to 91,714
_RS26845
ABIE40_RS26850: ABIE40_RS26850 - hypothetical protein, at 91,767 to 92,108
_RS26850
ABIE40_RS26855: ABIE40_RS26855 - hypothetical protein, at 92,121 to 92,564
_RS26855
ABIE40_RS26860: ABIE40_RS26860 - response regulator, at 92,807 to 93,175
_RS26860
Position (kb) 91
92
93 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 90.899 kb on + strand at 90.900 kb on - strand at 90.928 kb on + strand at 90.929 kb on - strand at 90.934 kb on - strand at 91.037 kb on - strand at 91.054 kb on + strand at 91.054 kb on + strand at 91.054 kb on + strand at 91.054 kb on + strand at 91.054 kb on + strand at 91.055 kb on - strand at 91.055 kb on - strand at 91.161 kb on - strand at 91.161 kb on - strand at 91.235 kb on - strand, within ABIE40_RS26845 at 91.235 kb on - strand, within ABIE40_RS26845 at 91.405 kb on + strand, within ABIE40_RS26845 at 91.405 kb on + strand, within ABIE40_RS26845 at 91.406 kb on - strand, within ABIE40_RS26845 at 91.406 kb on - strand, within ABIE40_RS26845 at 91.501 kb on + strand, within ABIE40_RS26845 at 91.502 kb on - strand, within ABIE40_RS26845 at 91.502 kb on - strand, within ABIE40_RS26845 at 91.658 kb on - strand, within ABIE40_RS26845 at 91.712 kb on + strand at 91.775 kb on + strand at 91.775 kb on + strand at 91.775 kb on + strand at 91.776 kb on - strand at 91.776 kb on - strand at 91.857 kb on - strand, within ABIE40_RS26850 at 91.934 kb on - strand, within ABIE40_RS26850 at 92.078 kb on + strand at 92.079 kb on - strand at 92.092 kb on + strand at 92.093 kb on - strand at 92.093 kb on - strand at 92.093 kb on - strand at 92.106 kb on + strand at 92.106 kb on + strand at 92.106 kb on + strand at 92.106 kb on + strand at 92.107 kb on - strand at 92.107 kb on - strand at 92.107 kb on - strand at 92.138 kb on - strand at 92.433 kb on - strand, within ABIE40_RS26855 at 92.433 kb on - strand, within ABIE40_RS26855 at 92.562 kb on + strand at 92.563 kb on - strand at 92.563 kb on - strand at 92.563 kb on - strand at 92.563 kb on - strand at 92.563 kb on - strand at 92.563 kb on - strand at 92.569 kb on - strand at 92.634 kb on - strand at 92.656 kb on + strand at 92.687 kb on + strand at 92.687 kb on + strand at 92.764 kb on - strand at 92.781 kb on + strand at 92.781 kb on + strand at 92.781 kb on + strand at 92.782 kb on - strand at 92.782 kb on - strand at 92.782 kb on - strand at 92.782 kb on - strand at 92.956 kb on + strand, within ABIE40_RS26860 at 92.957 kb on - strand, within ABIE40_RS26860 at 92.967 kb on + strand, within ABIE40_RS26860 at 92.967 kb on + strand, within ABIE40_RS26860 at 93.012 kb on + strand, within ABIE40_RS26860 at 93.012 kb on + strand, within ABIE40_RS26860 at 93.012 kb on + strand, within ABIE40_RS26860 at 93.012 kb on + strand, within ABIE40_RS26860 at 93.013 kb on - strand, within ABIE40_RS26860 at 93.013 kb on - strand, within ABIE40_RS26860
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 90,899 + -1.7 90,900 - +0.4 90,928 + +0.2 90,929 - -1.8 90,934 - -0.2 91,037 - +2.4 91,054 + +0.9 91,054 + -2.0 91,054 + -1.3 91,054 + -0.6 91,054 + -0.2 91,055 - +1.9 91,055 - -3.0 91,161 - -0.6 91,161 - -0.0 91,235 - ABIE40_RS26845 0.13 +0.0 91,235 - ABIE40_RS26845 0.13 +2.4 91,405 + ABIE40_RS26845 0.44 -0.3 91,405 + ABIE40_RS26845 0.44 -0.7 91,406 - ABIE40_RS26845 0.44 +0.7 91,406 - ABIE40_RS26845 0.44 -0.8 91,501 + ABIE40_RS26845 0.61 +2.1 91,502 - ABIE40_RS26845 0.61 -1.8 91,502 - ABIE40_RS26845 0.61 +1.9 91,658 - ABIE40_RS26845 0.90 -2.0 91,712 + -1.0 91,775 + -2.0 91,775 + -0.8 91,775 + -0.6 91,776 - +0.1 91,776 - +1.3 91,857 - ABIE40_RS26850 0.26 -1.0 91,934 - ABIE40_RS26850 0.49 -2.5 92,078 + -0.5 92,079 - -0.6 92,092 + +1.7 92,093 - +2.1 92,093 - -3.4 92,093 - +0.3 92,106 + -1.8 92,106 + +1.2 92,106 + +1.4 92,106 + -1.0 92,107 - -0.2 92,107 - -0.3 92,107 - -0.4 92,138 - -3.0 92,433 - ABIE40_RS26855 0.70 +1.2 92,433 - ABIE40_RS26855 0.70 -3.7 92,562 + +0.6 92,563 - +0.3 92,563 - +0.4 92,563 - -0.2 92,563 - +1.7 92,563 - -0.4 92,563 - -3.8 92,569 - -1.5 92,634 - +0.3 92,656 + +0.2 92,687 + -4.2 92,687 + +1.7 92,764 - -0.9 92,781 + +1.1 92,781 + +0.7 92,781 + +0.5 92,782 - -0.1 92,782 - +3.1 92,782 - -0.9 92,782 - -2.0 92,956 + ABIE40_RS26860 0.40 -0.9 92,957 - ABIE40_RS26860 0.41 -1.2 92,967 + ABIE40_RS26860 0.43 +1.4 92,967 + ABIE40_RS26860 0.43 -0.3 93,012 + ABIE40_RS26860 0.56 -1.4 93,012 + ABIE40_RS26860 0.56 -1.1 93,012 + ABIE40_RS26860 0.56 +2.9 93,012 + ABIE40_RS26860 0.56 -1.7 93,013 - ABIE40_RS26860 0.56 +0.5 93,013 - ABIE40_RS26860 0.56 +2.0
Or see this region's nucleotide sequence