Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22660 and ABIE40_RS22665 are separated by 170 nucleotides ABIE40_RS22665 and ABIE40_RS22670 are separated by 6 nucleotides ABIE40_RS22670 and ABIE40_RS22675 overlap by 4 nucleotides
ABIE40_RS22660: ABIE40_RS22660 - class 1b ribonucleoside-diphosphate reductase subunit alpha, at 679,393 to 681,552
_RS22660
ABIE40_RS22665: ABIE40_RS22665 - class 1b ribonucleoside-diphosphate reductase subunit beta, at 681,723 to 682,697
_RS22665
ABIE40_RS22670: ABIE40_RS22670 - HlyD family secretion protein, at 682,704 to 683,591
_RS22670
ABIE40_RS22675: ABIE40_RS22675 - DUF1656 domain-containing protein, at 683,588 to 683,797
_RS22675
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 680.757 kb on + strand, within ABIE40_RS22660 at 680.758 kb on - strand, within ABIE40_RS22660 at 680.903 kb on - strand, within ABIE40_RS22660 at 680.914 kb on + strand, within ABIE40_RS22660 at 680.989 kb on + strand, within ABIE40_RS22660 at 680.990 kb on - strand, within ABIE40_RS22660 at 681.016 kb on + strand, within ABIE40_RS22660 at 681.144 kb on + strand, within ABIE40_RS22660 at 681.188 kb on - strand, within ABIE40_RS22660 at 681.481 kb on + strand at 681.481 kb on + strand at 681.481 kb on + strand at 681.564 kb on + strand at 681.564 kb on + strand at 681.564 kb on + strand at 681.564 kb on + strand at 681.565 kb on - strand at 681.723 kb on - strand at 682.102 kb on - strand, within ABIE40_RS22665 at 682.162 kb on - strand, within ABIE40_RS22665 at 682.162 kb on - strand, within ABIE40_RS22665 at 682.236 kb on + strand, within ABIE40_RS22665 at 682.249 kb on - strand, within ABIE40_RS22665 at 682.326 kb on + strand, within ABIE40_RS22665 at 682.327 kb on - strand, within ABIE40_RS22665 at 682.329 kb on + strand, within ABIE40_RS22665 at 682.330 kb on - strand, within ABIE40_RS22665 at 682.330 kb on - strand, within ABIE40_RS22665 at 682.504 kb on - strand, within ABIE40_RS22665 at 682.648 kb on - strand at 682.856 kb on + strand, within ABIE40_RS22670 at 682.856 kb on + strand, within ABIE40_RS22670 at 682.857 kb on - strand, within ABIE40_RS22670 at 683.011 kb on + strand, within ABIE40_RS22670 at 683.011 kb on + strand, within ABIE40_RS22670 at 683.011 kb on + strand, within ABIE40_RS22670 at 683.011 kb on + strand, within ABIE40_RS22670 at 683.012 kb on - strand, within ABIE40_RS22670 at 683.012 kb on - strand, within ABIE40_RS22670 at 683.012 kb on - strand, within ABIE40_RS22670 at 683.012 kb on - strand, within ABIE40_RS22670 at 683.074 kb on + strand, within ABIE40_RS22670 at 683.075 kb on - strand, within ABIE40_RS22670 at 683.075 kb on - strand, within ABIE40_RS22670 at 683.185 kb on + strand, within ABIE40_RS22670 at 683.185 kb on + strand, within ABIE40_RS22670 at 683.185 kb on + strand, within ABIE40_RS22670 at 683.186 kb on - strand, within ABIE40_RS22670 at 683.186 kb on - strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.500 kb on + strand, within ABIE40_RS22670 at 683.501 kb on - strand, within ABIE40_RS22670 at 683.501 kb on - strand, within ABIE40_RS22670 at 683.501 kb on - strand, within ABIE40_RS22670 at 683.501 kb on - strand, within ABIE40_RS22670 at 683.501 kb on - strand, within ABIE40_RS22670 at 683.501 kb on - strand, within ABIE40_RS22670 at 683.501 kb on - strand, within ABIE40_RS22670 at 683.501 kb on - strand, within ABIE40_RS22670 at 683.501 kb on - strand, within ABIE40_RS22670 at 683.527 kb on + strand at 683.581 kb on - strand at 683.581 kb on - strand at 683.598 kb on + strand at 683.598 kb on + strand at 683.599 kb on - strand at 683.640 kb on + strand, within ABIE40_RS22675 at 683.640 kb on + strand, within ABIE40_RS22675 at 683.640 kb on + strand, within ABIE40_RS22675 at 683.640 kb on + strand, within ABIE40_RS22675 at 683.641 kb on - strand, within ABIE40_RS22675 at 683.641 kb on - strand, within ABIE40_RS22675 at 683.641 kb on - strand, within ABIE40_RS22675 at 683.641 kb on - strand, within ABIE40_RS22675 at 683.641 kb on - strand, within ABIE40_RS22675
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 680,757 + ABIE40_RS22660 0.63 +1.0 680,758 - ABIE40_RS22660 0.63 -0.3 680,903 - ABIE40_RS22660 0.70 -1.0 680,914 + ABIE40_RS22660 0.70 +1.4 680,989 + ABIE40_RS22660 0.74 -1.6 680,990 - ABIE40_RS22660 0.74 -1.0 681,016 + ABIE40_RS22660 0.75 +2.0 681,144 + ABIE40_RS22660 0.81 -1.4 681,188 - ABIE40_RS22660 0.83 -1.7 681,481 + -0.6 681,481 + +0.6 681,481 + +2.5 681,564 + -0.3 681,564 + +1.0 681,564 + +0.5 681,564 + -0.1 681,565 - +0.2 681,723 - -0.3 682,102 - ABIE40_RS22665 0.39 +0.0 682,162 - ABIE40_RS22665 0.45 -0.6 682,162 - ABIE40_RS22665 0.45 -1.4 682,236 + ABIE40_RS22665 0.53 +0.0 682,249 - ABIE40_RS22665 0.54 -1.3 682,326 + ABIE40_RS22665 0.62 -1.0 682,327 - ABIE40_RS22665 0.62 +0.0 682,329 + ABIE40_RS22665 0.62 -0.3 682,330 - ABIE40_RS22665 0.62 -0.3 682,330 - ABIE40_RS22665 0.62 -0.3 682,504 - ABIE40_RS22665 0.80 -1.2 682,648 - +3.2 682,856 + ABIE40_RS22670 0.17 -1.2 682,856 + ABIE40_RS22670 0.17 -0.5 682,857 - ABIE40_RS22670 0.17 +0.0 683,011 + ABIE40_RS22670 0.35 -0.3 683,011 + ABIE40_RS22670 0.35 +1.9 683,011 + ABIE40_RS22670 0.35 -1.6 683,011 + ABIE40_RS22670 0.35 -1.1 683,012 - ABIE40_RS22670 0.35 +1.8 683,012 - ABIE40_RS22670 0.35 -0.4 683,012 - ABIE40_RS22670 0.35 +1.9 683,012 - ABIE40_RS22670 0.35 -3.5 683,074 + ABIE40_RS22670 0.42 +3.3 683,075 - ABIE40_RS22670 0.42 +0.3 683,075 - ABIE40_RS22670 0.42 -0.8 683,185 + ABIE40_RS22670 0.54 -2.9 683,185 + ABIE40_RS22670 0.54 +0.5 683,185 + ABIE40_RS22670 0.54 -2.8 683,186 - ABIE40_RS22670 0.54 -0.9 683,186 - ABIE40_RS22670 0.54 +0.8 683,500 + ABIE40_RS22670 0.90 +0.1 683,500 + ABIE40_RS22670 0.90 -0.2 683,500 + ABIE40_RS22670 0.90 -1.7 683,500 + ABIE40_RS22670 0.90 -0.2 683,500 + ABIE40_RS22670 0.90 +2.0 683,500 + ABIE40_RS22670 0.90 -1.6 683,500 + ABIE40_RS22670 0.90 -0.5 683,500 + ABIE40_RS22670 0.90 -1.0 683,500 + ABIE40_RS22670 0.90 -0.2 683,500 + ABIE40_RS22670 0.90 -0.6 683,500 + ABIE40_RS22670 0.90 -1.3 683,500 + ABIE40_RS22670 0.90 +0.9 683,500 + ABIE40_RS22670 0.90 +0.4 683,500 + ABIE40_RS22670 0.90 -0.3 683,500 + ABIE40_RS22670 0.90 +0.6 683,501 - ABIE40_RS22670 0.90 +0.3 683,501 - ABIE40_RS22670 0.90 -0.2 683,501 - ABIE40_RS22670 0.90 -0.4 683,501 - ABIE40_RS22670 0.90 -0.8 683,501 - ABIE40_RS22670 0.90 +2.0 683,501 - ABIE40_RS22670 0.90 +3.3 683,501 - ABIE40_RS22670 0.90 +2.2 683,501 - ABIE40_RS22670 0.90 +0.1 683,501 - ABIE40_RS22670 0.90 -1.0 683,527 + -1.4 683,581 - -0.6 683,581 - -1.9 683,598 + +1.6 683,598 + -0.2 683,599 - -0.3 683,640 + ABIE40_RS22675 0.25 +0.0 683,640 + ABIE40_RS22675 0.25 -0.2 683,640 + ABIE40_RS22675 0.25 -0.2 683,640 + ABIE40_RS22675 0.25 -1.7 683,641 - ABIE40_RS22675 0.25 -2.1 683,641 - ABIE40_RS22675 0.25 -0.7 683,641 - ABIE40_RS22675 0.25 +0.7 683,641 - ABIE40_RS22675 0.25 -2.1 683,641 - ABIE40_RS22675 0.25 +1.9
Or see this region's nucleotide sequence