Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21185

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21180 and ABIE40_RS21185 are separated by 66 nucleotidesABIE40_RS21185 and ABIE40_RS21190 are separated by 27 nucleotidesABIE40_RS21190 and ABIE40_RS21195 overlap by 4 nucleotides ABIE40_RS21180: ABIE40_RS21180 - PAS domain-containing protein, at 351,471 to 352,133 _RS21180 ABIE40_RS21185: ABIE40_RS21185 - lysine/arginine/ornithine ABC transporter substrate-binding protein, at 352,200 to 352,973 _RS21185 ABIE40_RS21190: ABIE40_RS21190 - ABC transporter permease subunit, at 353,001 to 353,705 _RS21190 ABIE40_RS21195: ABIE40_RS21195 - ABC transporter permease subunit, at 353,702 to 354,388 _RS21195 Position (kb) 352 353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 351.248 kb on + strandat 351.345 kb on + strandat 351.345 kb on + strandat 351.345 kb on + strandat 351.345 kb on + strandat 351.345 kb on + strandat 351.345 kb on + strandat 351.345 kb on + strandat 351.346 kb on - strandat 351.346 kb on - strandat 351.346 kb on - strandat 351.346 kb on - strandat 351.346 kb on - strandat 351.401 kb on + strandat 351.401 kb on + strandat 351.402 kb on - strandat 351.492 kb on + strandat 351.492 kb on + strandat 351.492 kb on + strandat 351.492 kb on + strandat 351.492 kb on + strandat 351.493 kb on + strandat 351.493 kb on - strandat 351.493 kb on - strandat 351.493 kb on - strandat 351.493 kb on - strandat 351.493 kb on - strandat 351.493 kb on - strandat 351.493 kb on - strandat 351.903 kb on + strand, within ABIE40_RS21180at 351.903 kb on + strand, within ABIE40_RS21180at 351.904 kb on - strand, within ABIE40_RS21180at 352.014 kb on + strand, within ABIE40_RS21180at 352.015 kb on - strand, within ABIE40_RS21180at 352.053 kb on + strand, within ABIE40_RS21180at 352.054 kb on - strand, within ABIE40_RS21180at 352.054 kb on - strand, within ABIE40_RS21180at 352.184 kb on + strandat 352.184 kb on + strandat 352.184 kb on + strandat 352.185 kb on - strandat 352.185 kb on - strandat 352.205 kb on + strandat 352.205 kb on + strandat 352.205 kb on + strandat 352.205 kb on + strandat 352.205 kb on + strandat 352.205 kb on + strandat 352.205 kb on + strandat 352.205 kb on + strandat 352.206 kb on - strandat 352.206 kb on - strandat 352.206 kb on - strandat 352.206 kb on - strandat 352.206 kb on - strandat 352.206 kb on - strandat 352.212 kb on - strandat 352.212 kb on - strandat 352.212 kb on - strandat 352.212 kb on - strandat 352.364 kb on + strand, within ABIE40_RS21185at 352.458 kb on + strand, within ABIE40_RS21185at 352.458 kb on + strand, within ABIE40_RS21185at 352.458 kb on + strand, within ABIE40_RS21185at 352.459 kb on - strand, within ABIE40_RS21185at 352.459 kb on - strand, within ABIE40_RS21185at 352.527 kb on + strand, within ABIE40_RS21185at 352.527 kb on + strand, within ABIE40_RS21185at 352.527 kb on + strand, within ABIE40_RS21185at 352.528 kb on - strand, within ABIE40_RS21185at 352.528 kb on - strand, within ABIE40_RS21185at 352.530 kb on + strand, within ABIE40_RS21185at 352.531 kb on - strand, within ABIE40_RS21185at 352.531 kb on - strand, within ABIE40_RS21185at 352.659 kb on + strand, within ABIE40_RS21185at 352.659 kb on + strand, within ABIE40_RS21185at 352.659 kb on + strand, within ABIE40_RS21185at 352.659 kb on + strand, within ABIE40_RS21185at 352.659 kb on + strand, within ABIE40_RS21185at 352.659 kb on + strand, within ABIE40_RS21185at 352.659 kb on + strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.660 kb on - strand, within ABIE40_RS21185at 352.684 kb on - strand, within ABIE40_RS21185at 352.830 kb on + strand, within ABIE40_RS21185at 352.831 kb on - strand, within ABIE40_RS21185at 352.910 kb on + strandat 352.929 kb on + strandat 352.929 kb on + strandat 352.929 kb on + strandat 352.930 kb on - strandat 352.930 kb on - strandat 352.930 kb on - strandat 352.930 kb on - strandat 352.930 kb on - strandat 352.930 kb on - strandat 352.950 kb on + strandat 352.951 kb on - strandat 352.951 kb on - strandat 352.968 kb on + strandat 352.971 kb on + strandat 352.971 kb on + strandat 352.972 kb on - strandat 353.223 kb on + strand, within ABIE40_RS21190at 353.223 kb on + strand, within ABIE40_RS21190at 353.223 kb on + strand, within ABIE40_RS21190at 353.223 kb on + strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.224 kb on - strand, within ABIE40_RS21190at 353.226 kb on + strand, within ABIE40_RS21190at 353.226 kb on + strand, within ABIE40_RS21190at 353.271 kb on + strand, within ABIE40_RS21190at 353.271 kb on + strand, within ABIE40_RS21190at 353.272 kb on - strand, within ABIE40_RS21190at 353.562 kb on + strand, within ABIE40_RS21190at 353.562 kb on + strand, within ABIE40_RS21190at 353.562 kb on + strand, within ABIE40_RS21190at 353.563 kb on - strand, within ABIE40_RS21190at 353.601 kb on + strand, within ABIE40_RS21190at 353.601 kb on + strand, within ABIE40_RS21190at 353.602 kb on - strand, within ABIE40_RS21190at 353.622 kb on + strand, within ABIE40_RS21190at 353.622 kb on + strand, within ABIE40_RS21190at 353.623 kb on - strand, within ABIE40_RS21190at 353.674 kb on - strandat 353.674 kb on - strandat 353.730 kb on - strandat 353.870 kb on + strand, within ABIE40_RS21195at 353.870 kb on + strand, within ABIE40_RS21195at 353.876 kb on + strand, within ABIE40_RS21195at 353.876 kb on + strand, within ABIE40_RS21195at 353.921 kb on + strand, within ABIE40_RS21195at 353.922 kb on - strand, within ABIE40_RS21195at 353.925 kb on - strand, within ABIE40_RS21195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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351,248 + -0.3
351,345 + +0.1
351,345 + +0.9
351,345 + -3.2
351,345 + -0.2
351,345 + -0.8
351,345 + +0.6
351,345 + +1.7
351,346 - +1.7
351,346 - +1.4
351,346 - +1.5
351,346 - -0.2
351,346 - +2.1
351,401 + -1.8
351,401 + +0.7
351,402 - +0.3
351,492 + +0.0
351,492 + +0.0
351,492 + -0.0
351,492 + -0.5
351,492 + +0.1
351,493 + +0.2
351,493 - -0.3
351,493 - -2.9
351,493 - -0.4
351,493 - -0.8
351,493 - -0.2
351,493 - +0.7
351,493 - +1.1
351,903 + ABIE40_RS21180 0.65 +1.5
351,903 + ABIE40_RS21180 0.65 +0.2
351,904 - ABIE40_RS21180 0.65 -2.2
352,014 + ABIE40_RS21180 0.82 +0.4
352,015 - ABIE40_RS21180 0.82 -0.5
352,053 + ABIE40_RS21180 0.88 +2.6
352,054 - ABIE40_RS21180 0.88 -1.1
352,054 - ABIE40_RS21180 0.88 +0.8
352,184 + +1.2
352,184 + +1.5
352,184 + +0.7
352,185 - -2.1
352,185 - -0.9
352,205 + +0.4
352,205 + -1.0
352,205 + +0.4
352,205 + -1.9
352,205 + +0.7
352,205 + -0.5
352,205 + -3.0
352,205 + -1.4
352,206 - +1.0
352,206 - -0.6
352,206 - -0.9
352,206 - +2.0
352,206 - +0.5
352,206 - +0.5
352,212 - +1.1
352,212 - +0.8
352,212 - -1.9
352,212 - +2.0
352,364 + ABIE40_RS21185 0.21 -0.9
352,458 + ABIE40_RS21185 0.33 +0.5
352,458 + ABIE40_RS21185 0.33 +0.4
352,458 + ABIE40_RS21185 0.33 -1.1
352,459 - ABIE40_RS21185 0.33 -0.6
352,459 - ABIE40_RS21185 0.33 -1.8
352,527 + ABIE40_RS21185 0.42 +0.1
352,527 + ABIE40_RS21185 0.42 -0.9
352,527 + ABIE40_RS21185 0.42 +0.3
352,528 - ABIE40_RS21185 0.42 +1.0
352,528 - ABIE40_RS21185 0.42 -1.6
352,530 + ABIE40_RS21185 0.43 -1.8
352,531 - ABIE40_RS21185 0.43 -2.8
352,531 - ABIE40_RS21185 0.43 +0.0
352,659 + ABIE40_RS21185 0.59 -2.9
352,659 + ABIE40_RS21185 0.59 -0.0
352,659 + ABIE40_RS21185 0.59 -0.8
352,659 + ABIE40_RS21185 0.59 -1.8
352,659 + ABIE40_RS21185 0.59 -0.2
352,659 + ABIE40_RS21185 0.59 -0.4
352,659 + ABIE40_RS21185 0.59 -2.2
352,660 - ABIE40_RS21185 0.59 -3.7
352,660 - ABIE40_RS21185 0.59 -1.0
352,660 - ABIE40_RS21185 0.59 +1.9
352,660 - ABIE40_RS21185 0.59 +0.2
352,660 - ABIE40_RS21185 0.59 -0.4
352,660 - ABIE40_RS21185 0.59 +0.3
352,660 - ABIE40_RS21185 0.59 +1.8
352,660 - ABIE40_RS21185 0.59 +0.0
352,660 - ABIE40_RS21185 0.59 +0.6
352,660 - ABIE40_RS21185 0.59 +1.5
352,684 - ABIE40_RS21185 0.63 -1.3
352,830 + ABIE40_RS21185 0.81 +1.3
352,831 - ABIE40_RS21185 0.82 +2.6
352,910 + +0.5
352,929 + -0.3
352,929 + +0.0
352,929 + -2.4
352,930 - -0.1
352,930 - +0.9
352,930 - -0.2
352,930 - -0.6
352,930 - -0.3
352,930 - -0.3
352,950 + -0.6
352,951 - -0.3
352,951 - -0.0
352,968 + -1.9
352,971 + -0.5
352,971 + +0.3
352,972 - +0.7
353,223 + ABIE40_RS21190 0.31 -0.5
353,223 + ABIE40_RS21190 0.31 +0.3
353,223 + ABIE40_RS21190 0.31 +0.4
353,223 + ABIE40_RS21190 0.31 -0.2
353,224 - ABIE40_RS21190 0.32 -0.9
353,224 - ABIE40_RS21190 0.32 +0.4
353,224 - ABIE40_RS21190 0.32 +0.5
353,224 - ABIE40_RS21190 0.32 -0.3
353,224 - ABIE40_RS21190 0.32 -0.1
353,224 - ABIE40_RS21190 0.32 +1.1
353,224 - ABIE40_RS21190 0.32 +3.1
353,224 - ABIE40_RS21190 0.32 -0.1
353,224 - ABIE40_RS21190 0.32 +0.4
353,224 - ABIE40_RS21190 0.32 -0.3
353,224 - ABIE40_RS21190 0.32 -0.7
353,226 + ABIE40_RS21190 0.32 -0.6
353,226 + ABIE40_RS21190 0.32 -0.2
353,271 + ABIE40_RS21190 0.38 -0.0
353,271 + ABIE40_RS21190 0.38 -0.7
353,272 - ABIE40_RS21190 0.38 +0.9
353,562 + ABIE40_RS21190 0.80 -0.6
353,562 + ABIE40_RS21190 0.80 +1.0
353,562 + ABIE40_RS21190 0.80 -0.0
353,563 - ABIE40_RS21190 0.80 +0.4
353,601 + ABIE40_RS21190 0.85 +0.2
353,601 + ABIE40_RS21190 0.85 -1.8
353,602 - ABIE40_RS21190 0.85 -3.6
353,622 + ABIE40_RS21190 0.88 -1.0
353,622 + ABIE40_RS21190 0.88 +1.1
353,623 - ABIE40_RS21190 0.88 -0.4
353,674 - +0.3
353,674 - -0.4
353,730 - -0.5
353,870 + ABIE40_RS21195 0.24 +0.6
353,870 + ABIE40_RS21195 0.24 +0.7
353,876 + ABIE40_RS21195 0.25 -2.5
353,876 + ABIE40_RS21195 0.25 +0.2
353,921 + ABIE40_RS21195 0.32 -0.1
353,922 - ABIE40_RS21195 0.32 -0.3
353,925 - ABIE40_RS21195 0.32 -2.6

Or see this region's nucleotide sequence